[{"type":"bedgraph","name":"Gene_129FPKM_mm9.txt","url":"http://epigenomegateway.wustl.edu/browser/t/1834848589.txt.gz","mode":1,"qtc":{"anglescale":1,"pr":230,"pg":131,"pb":2,"nr":255,"ng":0,"nb":0,"pth":"#000099","nth":"#800000","thtype":1,"thmin":0,"thmax":25,"thpercentile":90,"height":20,"summeth":1,"barplotbg":null},"metadata":{}},{"type":"bedgraph","name":"Gene_CASTFPKM_mm9.txt","url":"http://epigenomegateway.wustl.edu/browser/t/1304857415.txt.gz","mode":1,"qtc":{"anglescale":1,"pr":230,"pg":131,"pb":2,"nr":255,"ng":0,"nb":0,"pth":"#000099","nth":"#800000","thtype":1,"thmin":0,"thmax":25,"thpercentile":90,"height":20,"summeth":1,"barplotbg":null},"metadata":{}},{"type":"bedgraph","name":"Gene_ratio_mm9.txt","url":"http://epigenomegateway.wustl.edu/browser/t/475234601.txt.gz","mode":1,"qtc":{"anglescale":1,"pr":0,"pg":0,"pb":230,"nr":255,"ng":0,"nb":0,"pth":"#000099","nth":"#800000","thtype":1,"thmin":-0.5,"thmax":0.5,"thpercentile":90,"height":35,"summeth":1},"metadata":{}},{"type":"bigwig","name":"ATAC 129","url":"ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1828nnn/GSM1828645/suppl/GSM1828645%5FESC%5F129%5Fmerge%2Esort%2Ebam%2Enorm%2Ebw","mode":1,"qtc":{"anglescale":1,"pr":0,"pg":0,"pb":230,"nr":255,"ng":0,"nb":0,"pth":"#000099","nth":"#800000","thtype":1,"thmin":0,"thmax":10,"thpercentile":90,"height":40,"summeth":1,"smooth":5},"metadata":{}},{"type":"bigwig","name":"ATAC CAST","url":"ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1828nnn/GSM1828645/suppl/GSM1828645%5FESC%5FCast%5Fmerge%2Esort%2Ebam%2Enorm%2Ebw","mode":1,"qtc":{"anglescale":1,"pr":0,"pg":0,"pb":230,"nr":255,"ng":0,"nb":0,"pth":"#000099","nth":"#800000","thtype":1,"thmin":0,"thmax":10,"thpercentile":90,"height":40,"summeth":1,"smooth":5},"metadata":{}},{"type":"bed","name":"TE_near_mm9.bed","url":"http://epigenomegateway.wustl.edu/browser/t/1618203837.txt.gz","mode":3,"qtc":{"anglescale":1,"pr":255,"pg":0,"pb":0,"nr":0,"ng":0,"nb":230,"pth":"#800000","nth":"#000099","thtype":0,"thmin":0,"thmax":10,"thpercentile":95,"height":50,"summeth":1,"textcolor":"#000000","fontsize":"8pt","fontfamily":"sans-serif","fontbold":false,"bedcolor":"#336666"},"metadata":{}},{"type":"bed","name":"near_and_hic_129_TEs_mm9.bed","url":"http://epigenomegateway.wustl.edu/browser/t/2001043760.txt.gz","mode":3,"qtc":{"anglescale":1,"pr":255,"pg":0,"pb":0,"nr":0,"ng":0,"nb":230,"pth":"#800000","nth":"#000099","thtype":0,"thmin":0,"thmax":10,"thpercentile":95,"height":50,"summeth":1,"textcolor":"#000000","fontsize":"8pt","fontfamily":"sans-serif","fontbold":false,"bedcolor":"#336666"},"metadata":{}},{"type":"bed","name":"near_and_hic_CAST_TEs_mm9.bed","url":"http://epigenomegateway.wustl.edu/browser/t/1072402700.txt.gz","mode":3,"qtc":{"anglescale":1,"pr":255,"pg":0,"pb":0,"nr":0,"ng":0,"nb":230,"pth":"#800000","nth":"#000099","thtype":0,"thmin":0,"thmax":10,"thpercentile":95,"height":50,"summeth":1,"textcolor":"#000000","fontsize":"8pt","fontfamily":"sans-serif","fontbold":false,"bedcolor":"#336666"},"metadata":{}},{"type":"native_track","list":[{"name":"rmsk_all","mode":7,"qtc":{"anglescale":1,"pr":255,"pg":0,"pb":0,"nr":0,"ng":0,"nb":230,"pth":"#800000","nth":"#000099","thtype":0,"thmin":0,"thmax":10,"thpercentile":95,"height":35,"summeth":1,"textcolor":"#000000","fontsize":"8pt","fontfamily":"sans-serif","fontbold":false,"bedcolor":"#336666"},"showscoreidx":2,"scorenamelst":["Smith-Waterman score","SW score normalized by length","1-divergence%"],"scorescalelst":[{"type":0},{"type":0},{"type":0}],"metadata":{},"categories":{"1":["SINE - short interspersed nuclear elements","#cc0000"],"2":["LINE - long interspersed nuclear element","#FF6600"],"3":["LTR - long terminal repeat element","#006600"],"4":["DNA transposon","#4A72E8"],"5":["Simple repeat, micro-satellite","#AB833B"],"6":["Satellite repeat","#660000"],"7":["Low complexity repeat","#663333"],"8":["RNA repeat","#cc33ff"],"9":["Other repeats","#488E8E"],"10":["Unknown","#5C5C5C"],"-1":["no information","transparent"]}},{"name":"refGene","mode":3,"qtc":{"anglescale":1,"pr":255,"pg":0,"pb":0,"nr":0,"ng":0,"nb":230,"pth":"#800000","nth":"#000099","thtype":0,"thmin":0,"thmax":10,"thpercentile":95,"height":50,"summeth":1,"textcolor":"#000000","fontsize":"8pt","fontfamily":"sans-serif","fontbold":false,"bedcolor":"#002EB8"},"metadata":{},"details":{"source":"UCSC Genome Browser","download date":"Nov. 28, 2013"}}]},{"type":"metadata","vocabulary_set":{}},{"type":"coordinate_override","coord":"chr9,75220603,chr9,75264837"},{"type":"geneset_ripe","list":[{"name":"tempROI_mm9.bed","lst":[{"c":"chr3","a":75360774,"b":75459810,"isgene":false,"name":"Pdcd10","strand":"-","a1":75360774,"b1":75459810},{"c":"chr3","a":120994734,"b":121024040,"isgene":false,"name":"Alg14","strand":"+","a1":120994734,"b1":121024040},{"c":"chr6","a":122824574,"b":122868895,"isgene":false,"name":"Necap1","strand":"+","a1":122824574,"b1":122868895},{"c":"chr8","a":3500518,"b":3552506,"isgene":false,"name":"Mcoln1","strand":"+","a1":3500518,"b1":3552506},{"c":"chr8","a":3515383,"b":3552506,"isgene":false,"name":"Pnpla6","strand":"+","a1":3515383,"b1":3552506},{"c":"chr8","a":3516862,"b":3552506,"isgene":false,"name":"Pnpla6_2","strand":"+","a1":3516862,"b1":3552506,"label":"Pnpla6"},{"c":"chr8","a":3552249,"b":3621296,"isgene":false,"name":"Xab2","strand":"-","a1":3552249,"b1":3621296},{"c":"chr8","a":3552249,"b":3631108,"isgene":false,"name":"Stxbp2","strand":"+","a1":3552249,"b1":3631108},{"c":"chr9","a":19426534,"b":19499125,"isgene":false,"name":"Zfp317","strand":"+","a1":19426534,"b1":19499125},{"c":"chr9","a":19426747,"b":19499125,"isgene":false,"name":"Zfp317_2","strand":"+","a1":19426747,"b1":19499125,"label":"Zfp317"},{"c":"chr9","a":75224661,"b":75257166,"isgene":false,"name":"Mapk6","strand":"-","a1":75224661,"b1":75257166},{"c":"chr9","a":75224661,"b":75257823,"isgene":false,"name":"Mapk6_2","strand":"-","a1":75224661,"b1":75257823,"label":"Mapk6"},{"c":"chr9","a":75224661,"b":75289330,"isgene":false,"name":"Leo1","strand":"+","a1":75224661,"b1":75289330},{"c":"chr9","a":79885143,"b":79914709,"isgene":false,"name":"Senp6","strand":"+","a1":79885143,"b1":79914709},{"c":"chr9","a":86867296,"b":86916863,"isgene":false,"name":"Cyb5r4","strand":"+","a1":86867296,"b1":86916863},{"c":"chr11","a":16408487,"b":16508562,"isgene":false,"name":"Sec61g","strand":"-","a1":16408487,"b1":16508562},{"c":"chr11","a":66825396,"b":66866171,"isgene":false,"name":"Sco1","strand":"+","a1":66825396,"b1":66866171},{"c":"chr15","a":4974026,"b":5066612,"isgene":false,"name":"Rpl37","strand":"+","a1":4974026,"b1":5066612},{"c":"chr15","a":75447113,"b":75464792,"isgene":false,"name":"Zfp41","strand":"+","a1":75447113,"b1":75464792},{"c":"chr15","a":75465145,"b":75509230,"isgene":false,"name":"Top1mt","strand":"-","a1":75465145,"b1":75509230},{"c":"chr16","a":33176853,"b":33185156,"isgene":false,"name":"Osbpl11","strand":"+","a1":33176853,"b1":33185156},{"c":"chr16","a":33176853,"b":33251541,"isgene":false,"name":"Snx4","strand":"+","a1":33176853,"b1":33251541},{"c":"chr18","a":6241522,"b":6269370,"isgene":false,"name":"Kif5b","strand":"-","a1":6241522,"b1":6269370}],"gss_down":2500,"gss_opt":"genebody","gss_origin":"txstart","gss_up":2500}]}]