[{"type":"interaction","name":"ESCell Hi-C (HindIII 20kb rep2)","url":"http://egg.wustl.edu/d/mm9/Esc_20kb_hindIII_rep2.gz","public":true,"mode":"heatmap","qtc":{"anglescale":0.5,"pr":0,"pg":77,"pb":0,"nr":0,"ng":0,"nb":230,"pth":"#800000","nth":"#000099","thtype":0,"thmin":0,"thmax":10,"thpercentile":95,"height":10,"summeth":1,"textcolor":"#000000","fontsize":"8pt","fontfamily":"sans-serif","fontbold":false,"pcolor":"rgb(184,0,138)","ncolor":"rgb(0,99,133)","pcolorscore":74.1462430840092,"ncolorscore":0,"pfilterscore":0,"nfilterscore":0},"annotation":["148","10049"],"details":{"Publication":"Topological domains in mammalian genomes identified by analysis of chromatin interactions","Journal":"Nature 485, 376380","Year":"2012","Institution":"UCSD","PI":"Bing Ren","Sample":"Mouse embryonic stem cell","Restriction enzyme":"HindIII","Replication":"biological replicate 2","Bin size":"20 kb","URL":"http://chromosome.sdsc.edu/mouse/hi-c/download.html"},"geolst":["GSM862721"]},{"type":"BED","name":"SE_no_gene_overlap","url":"http://epigenomegateway.wustl.edu/browser/t/1505303614.txt.gz","mode":"full","qtc":{"anglescale":1,"pr":0,"pg":77,"pb":0,"nr":0,"ng":0,"nb":230,"pth":"#800000","nth":"#000099","thtype":0,"thmin":0,"thmax":10,"thpercentile":95,"height":50,"summeth":1,"textcolor":"#000000","fontsize":"8pt","fontfamily":"sans-serif","fontbold":false,"bedcolor":"#008000"}},{"type":"BED","name":"129_TADs","url":"http://epigenomegateway.wustl.edu/browser/t/540717518.txt.gz","mode":"full","qtc":{"anglescale":1,"pr":0,"pg":77,"pb":0,"nr":0,"ng":0,"nb":230,"pth":"#800000","nth":"#000099","thtype":0,"thmin":0,"thmax":10,"thpercentile":95,"height":50,"summeth":1,"textcolor":"#000000","fontsize":"8pt","fontfamily":"sans-serif","fontbold":false,"bedcolor":"#008000"}},{"type":"native_track","list":[{"name":"rmsk_ensemble","mode":"show","qtc":{"anglescale":1,"height":15},"categories":{"1":["SINE - short interspersed nuclear elements","#cc0000"],"2":["LINE - long interspersed nuclear element","#FF6600"],"3":["LTR - long terminal repeat element","#006600"],"4":["DNA transposon","#4A72E8"],"5":["Simple repeat, micro-satellite","#AB833B"],"6":["Satellite repeat","#660000"],"7":["Low complexity repeat","#663333"],"8":["RNA repeat","#cc33ff"],"9":["Other repeats","#488E8E"],"10":["Unknown","#5C5C5C"],"-1":["no information","transparent"]}},{"name":"refGene","mode":"full","qtc":{"anglescale":1,"pr":0,"pg":77,"pb":0,"nr":0,"ng":0,"nb":230,"pth":"#800000","nth":"#000099","thtype":0,"thmin":0,"thmax":10,"thpercentile":95,"height":50,"summeth":1,"textcolor":"rgb(0,0,0)","fontsize":"8pt","fontfamily":"sans-serif","fontbold":false,"bedcolor":"rgb(0,77,153)"}}]},{"type":"coordinate_override","coord":"chr5,109801202,chr5,111782090"},{"type":"native_metadata_terms","list":["Assay","Sample"]}]