[{"type":"BAM","name":"TwoStep1024-DNA","url":"http://132.239.135.28:8080/public/mra/RNA-DNA/proofOfConcept/sort_Paired1_TwoStep1024.bam","mode":6,"qtc":{"anglescale":1,"pr":204,"pg":0,"pb":0,"nr":0,"ng":0,"nb":230,"pth":"#800000","nth":"#000099","thtype":0,"thmin":0,"thmax":10,"thpercentile":95,"height":50,"summeth":1,"textcolor":"#000000","fontsize":"8pt","fontfamily":"sans-serif","fontbold":false,"forwardcolor":"rgb(0,0,153)","reversecolor":"rgb(153,0,0)","mismatchcolor":"rgb(255,255,0)"}},{"type":"BAM","name":"TwoStep1024-RNA","url":"http://132.239.135.28:8080/public/mra/RNA-DNA/proofOfConcept/sort_Paired2_TwoStep1024.bam","mode":6,"qtc":{"anglescale":1,"pr":204,"pg":0,"pb":0,"nr":0,"ng":0,"nb":230,"pth":"#800000","nth":"#000099","thtype":0,"thmin":0,"thmax":10,"thpercentile":95,"height":50,"summeth":1,"textcolor":"#000000","fontsize":"8pt","fontfamily":"sans-serif","fontbold":false,"forwardcolor":"rgb(0,0,153)","reversecolor":"rgb(153,0,0)","mismatchcolor":"rgb(255,255,0)"}},{"type":"BAM","name":"TwoStep1229-DNA","url":"http://132.239.135.28:8080/public/mra/RNA-DNA/proofOfConcept/sort_Paired1_TwoStep1219.bam","mode":6,"qtc":{"anglescale":1,"pr":55,"pg":0,"pb":173,"nr":0,"ng":0,"nb":230,"pth":"#800000","nth":"#000099","thtype":0,"thmin":0,"thmax":10,"thpercentile":95,"height":50,"summeth":1,"textcolor":"#000000","fontsize":"8pt","fontfamily":"sans-serif","fontbold":false,"forwardcolor":"rgb(0,0,153)","reversecolor":"rgb(153,0,0)","mismatchcolor":"rgb(255,255,0)"}},{"type":"BAM","name":"TwoStep1229-RNA","url":"http://132.239.135.28:8080/public/mra/RNA-DNA/proofOfConcept/sort_Paired2_TwoStep1219.bam","mode":6,"qtc":{"anglescale":1,"pr":55,"pg":0,"pb":173,"nr":0,"ng":0,"nb":230,"pth":"#800000","nth":"#000099","thtype":0,"thmin":0,"thmax":10,"thpercentile":95,"height":50,"summeth":1,"textcolor":"#000000","fontsize":"8pt","fontfamily":"sans-serif","fontbold":false,"forwardcolor":"rgb(0,0,153)","reversecolor":"rgb(153,0,0)","mismatchcolor":"rgb(255,255,0)"}},{"type":"BAM","name":"TwoStep1024-LR-DNA","url":"http://132.239.135.28:8080/public/rnadna/longRangeReads/TwoStep1024_DNA_10000_align.sorted.bam","mode":6,"qtc":{"anglescale":1,"pr":204,"pg":0,"pb":0,"nr":0,"ng":0,"nb":230,"pth":"#800000","nth":"#000099","thtype":0,"thmin":0,"thmax":10,"thpercentile":95,"height":50,"summeth":1,"textcolor":"#000000","fontsize":"8pt","fontfamily":"sans-serif","fontbold":false,"forwardcolor":"rgb(0,0,153)","reversecolor":"rgb(153,0,0)","mismatchcolor":"rgb(255,255,0)"}},{"type":"BAM","name":"TwoStep1024-LR-RNA","url":"http://132.239.135.28:8080/public/rnadna/longRangeReads/TwoStep1024_RNA_10000_align.sorted.bam","mode":6,"qtc":{"anglescale":1,"pr":204,"pg":0,"pb":0,"nr":0,"ng":0,"nb":230,"pth":"#800000","nth":"#000099","thtype":0,"thmin":0,"thmax":10,"thpercentile":95,"height":50,"summeth":1,"textcolor":"#000000","fontsize":"8pt","fontfamily":"sans-serif","fontbold":false,"forwardcolor":"rgb(0,0,153)","reversecolor":"rgb(153,0,0)","mismatchcolor":"rgb(255,255,0)"}},{"type":"BAM","name":"TwoStep1229-LR-DNA","url":"http://132.239.135.28:8080/public/rnadna/longRangeReads/TwoStep1219_DNA_10000_align.sorted.bam","mode":6,"qtc":{"anglescale":1,"pr":55,"pg":0,"pb":173,"nr":0,"ng":0,"nb":230,"pth":"#800000","nth":"#000099","thtype":0,"thmin":0,"thmax":10,"thpercentile":95,"height":50,"summeth":1,"textcolor":"#000000","fontsize":"8pt","fontfamily":"sans-serif","fontbold":false,"forwardcolor":"rgb(0,0,153)","reversecolor":"rgb(153,0,0)","mismatchcolor":"rgb(255,255,0)"}},{"type":"BAM","name":"TwoStep1229-LR-RNA","url":"http://132.239.135.28:8080/public/rnadna/longRangeReads/TwoStep1219_RNA_10000_align.sorted.bam","mode":6,"qtc":{"anglescale":1,"pr":55,"pg":0,"pb":173,"nr":0,"ng":0,"nb":230,"pth":"#800000","nth":"#000099","thtype":0,"thmin":0,"thmax":10,"thpercentile":95,"height":50,"summeth":1,"textcolor":"#000000","fontsize":"8pt","fontfamily":"sans-serif","fontbold":false,"forwardcolor":"rgb(0,0,153)","reversecolor":"rgb(153,0,0)","mismatchcolor":"rgb(255,255,0)"}},{"type":"BAM","name":"Xist","url":"http://132.239.135.28:8080/public/mra/RNA-DNA/contrast/SRR850621.sorted.bam","mode":6,"qtc":{"anglescale":1,"pr":173,"pg":0,"pb":118,"nr":0,"ng":0,"nb":230,"pth":"#800000","nth":"#000099","thtype":0,"thmin":0,"thmax":10,"thpercentile":95,"height":50,"summeth":1,"textcolor":"#000000","fontsize":"8pt","fontfamily":"sans-serif","fontbold":false,"forwardcolor":"rgb(0,0,153)","reversecolor":"rgb(153,0,0)","mismatchcolor":"rgb(255,255,0)"}},{"type":"native_track","list":[{"name":"rmsk_all","mode":7,"defaultmode":7,"qtc":{"anglescale":1,"pr":0,"pg":77,"pb":0,"nr":0,"ng":0,"nb":230,"pth":"#800000","nth":"#000099","thtype":0,"thmin":0,"thmax":10,"thpercentile":95,"height":50,"summeth":1,"textcolor":"#000000","fontsize":"8pt","fontfamily":"sans-serif","fontbold":false,"bedcolor":"#336666","scorescalelst":[{"type":0},{"type":0}]},"showscoreidx":2,"scorenamelst":["Smith-Waterman score","SW score normalized by length","1-divergence%"],"scorescalelst":[{"type":0},{"type":0},{"type":0}],"categories":{"1":["SINE - short interspersed nuclear element","#cc0000"],"2":["LINE - long interspersed nuclear element","#FF6600"],"3":["LTR - long terminal repeat element","#006600"],"4":["DNA transposon","#4A72E8"],"5":["Simple repeat, micro-satellite","#AB833B"],"6":["Satellite repeat","#660000"],"7":["Low complexity repeat","#663333"],"8":["RNA repeat","#cc33ff"],"9":["Other repeats","#488E8E"],"10":["Unknown","#5C5C5C"],"-1":["no information","transparent"]}},{"name":"refGene","mode":6,"qtc":{"anglescale":1,"pr":0,"pg":77,"pb":0,"nr":0,"ng":0,"nb":230,"pth":"#800000","nth":"#000099","thtype":0,"thmin":0,"thmax":10,"thpercentile":95,"height":50,"summeth":1,"textcolor":"rgb(0,0,0)","fontsize":"8pt","fontfamily":"sans-serif","fontbold":false,"bedcolor":"rgb(0,77,153)"}}]},{"type":"coordinate_override","coord":"chr10,2695101,chr10,64051676"}]