[{"type":"bed","name":"VISTA.bed","url":"http://epigenomegateway.wustl.edu/legacy/t/1736516216.txt.gz","mode":3,"qtc":{"anglescale":1,"pr":255,"pg":0,"pb":0,"nr":0,"ng":0,"nb":230,"pth":"#800000","nth":"#000099","thtype":0,"thmin":0,"thmax":10,"thpercentile":95,"height":50,"summeth":1,"textcolor":"#000000","fontsize":"8pt","fontfamily":"sans-serif","fontbold":false,"bedcolor":"rgb(199, 107, 30)"},"metadata":{}},{"type":"bed","name":"Iros_Encode_mm9.txt","url":"http://epigenomegateway.wustl.edu/legacy/t/921567694.txt.gz","mode":3,"qtc":{"anglescale":1,"pr":255,"pg":0,"pb":0,"nr":0,"ng":0,"nb":230,"pth":"#800000","nth":"#000099","thtype":0,"thmin":0,"thmax":10,"thpercentile":95,"height":50,"summeth":1,"textcolor":"#000000","fontsize":"8pt","fontfamily":"sans-serif","fontbold":false,"bedcolor":"#336666"},"metadata":{}},{"type":"bed","name":"Iros_MO_mm9.txt","url":"http://epigenomegateway.wustl.edu/legacy/t/927527234.txt.gz","mode":3,"qtc":{"anglescale":1,"pr":255,"pg":0,"pb":0,"nr":0,"ng":0,"nb":230,"pth":"#800000","nth":"#000099","thtype":0,"thmin":0,"thmax":10,"thpercentile":95,"height":50,"summeth":1,"textcolor":"#000000","fontsize":"8pt","fontfamily":"sans-serif","fontbold":false,"bedcolor":"#336666"},"metadata":{}},{"type":"bigwig","name":"E12_H3K27Ac","url":"http://nordlab.genomecenter.ucdavis.edu/CortexTFs/Round4/H3K27ac_51-92_WT_ChIP_merged_trimmed.fq.gz.srt.bam.normalizedRPKM.coverage.bw","mode":1,"qtc":{"anglescale":1,"pr":255,"pg":0,"pb":127,"nr":255,"ng":0,"nb":0,"pth":"#000099","nth":"#800000","thtype":1,"thmin":0,"thmax":50,"thpercentile":90,"height":40,"summeth":1,"bg":null},"metadata":{}},{"type":"bigwig","name":"E12_Emx2","url":"https://bioshare.bioinformatics.ucdavis.edu/bioshare/download/3485ry081sk7oh8/ChIPseq/Emx2PosE12_5_S16_L003_R1_001_trimmed.fq.gz.srt.bam.normalizedRPKM.coverage.bw","mode":1,"qtc":{"anglescale":1,"pr":236,"pg":20,"pb":20,"nr":255,"ng":0,"nb":0,"pth":"#000099","nth":"#800000","thtype":1,"thmin":0,"thmax":75,"thpercentile":90,"height":40,"summeth":1,"smooth":5},"metadata":{}},{"type":"bigwig","name":"E12_Nr2f1","url":"https://bioshare.bioinformatics.ucdavis.edu/bioshare/download/3485ry081sk7oh8/ChIPseq/e12_5CoupTF1_pos_S50_L007_R1_001_trimmed.fq.gz.srt.bam.normalizedRPKM.coverage.bw","mode":1,"qtc":{"anglescale":1,"pr":44,"pg":179,"pb":74,"nr":255,"ng":0,"nb":0,"pth":"#000099","nth":"#800000","thtype":1,"thmin":0,"thmax":75,"thpercentile":90,"height":40,"summeth":1,"smooth":5},"metadata":{}},{"type":"bigwig","name":"E12_Pbx1","url":"https://bioshare.bioinformatics.ucdavis.edu/bioshare/download/3485ry081sk7oh8/ChIPseq/Pbx1_e12.5_ChIP_CGATGT_L001_rep1_trimmed.fq.gz.srt.bam.normalizedRPKM.coverage.bw","mode":1,"qtc":{"anglescale":1,"pr":179,"pg":102,"pb":255,"nr":255,"ng":0,"nb":0,"pth":"#000099","nth":"#800000","thtype":1,"thmin":0,"thmax":75,"thpercentile":90,"height":40,"summeth":1,"smooth":5},"metadata":{}},{"type":"bigwig","name":"E12_Pax6","url":"https://bioshare.bioinformatics.ucdavis.edu/bioshare/download/3485ry081sk7oh8/ChIPseq/Pax6_e12.5_ChIP_CCTTCA_L004_rep1_trimmed.fq.gz.srt.bam.normalizedRPKM.coverage.bw","mode":1,"qtc":{"anglescale":1,"pr":0,"pg":187,"pb":242,"nr":255,"ng":0,"nb":0,"pth":"#000099","nth":"#800000","thtype":1,"thmin":0,"thmax":75,"thpercentile":90,"height":40,"summeth":1,"smooth":5},"metadata":{}},{"type":"bigwig","name":"E12_Lhx2","url":"https://bioshare.bioinformatics.ucdavis.edu/bioshare/download/3485ry081sk7oh8/ChIPseq/Lhx2_ChIP_CX_e12___S63_L008_R1_001_trimmed.fq.gz.srt.bam.normalizedRPKM.coverage.bw","mode":1,"qtc":{"anglescale":1,"pr":219,"pg":145,"pb":138,"nr":255,"ng":0,"nb":0,"pth":"#000099","nth":"#800000","thtype":1,"thmin":0,"thmax":75,"thpercentile":100,"height":40,"summeth":1,"smooth":5},"metadata":{}},{"type":"bigwig","name":"E12.5 H3K27me3 Pax6 WT","url":"https://bioshare.bioinformatics.ucdavis.edu/bioshare/download/3485ry081sk7oh8/ChIPseq/Pax6_WT8_Ftag_E12_cx_27me3_S57_L006_R1_001_trimmed.fq.gz.srt.bam.normalizedRPKM.coverage.bw","mode":1,"qtc":{"anglescale":1,"pr":122,"pg":0,"pb":61,"nr":255,"ng":0,"nb":0,"pth":"#000099","nth":"#800000","thtype":1,"thmin":0,"thmax":100,"thpercentile":95,"height":40,"summeth":1,"logtype":1,"smooth":5,"bg":"#FFFFFF"},"metadata":{}},{"type":"bigwig","name":"E12.5 H3K27me3 Pax6Mut","url":"https://bioshare.bioinformatics.ucdavis.edu/bioshare/download/3485ry081sk7oh8/ChIPseq/Pax6_Mut6_Ftag_E12_cx_27me3_S54_L006_R1_001_trimmed.fq.gz.srt.bam.normalizedRPKM.coverage.bw","mode":1,"qtc":{"anglescale":1,"pr":122,"pg":0,"pb":61,"nr":255,"ng":0,"nb":0,"pth":"#000099","nth":"#800000","thtype":1,"thmin":0,"thmax":100,"thpercentile":90,"height":40,"summeth":1,"smooth":5,"bg":"#E3E3E3"},"metadata":{}},{"type":"bigwig","name":"E12.5 H3K27Ac Pax6 WT","url":"https://bioshare.bioinformatics.ucdavis.edu/bioshare/download/3485ry081sk7oh8/ChIPseq/Pax6_WT8_Ftag_E12_cx_ac27_S56_L006_R1_001_trimmed.fq.gz.srt.bam.normalizedRPKM.coverage.bw","mode":1,"qtc":{"anglescale":1,"pr":255,"pg":0,"pb":127,"nr":255,"ng":0,"nb":0,"pth":"#000099","nth":"#800000","thtype":1,"thmin":0,"thmax":100,"thpercentile":90,"height":40,"summeth":1,"smooth":5,"bg":"#FFFFFF"},"metadata":{}},{"type":"bigwig","name":"E12.5 H3K27Ac Pax6 Mut","url":"https://bioshare.bioinformatics.ucdavis.edu/bioshare/download/3485ry081sk7oh8/ChIPseq/Pax6_Mut6_Ftag_E12_cx_ac27_S53_L006_R1_001_trimmed.fq.gz.srt.bam.normalizedRPKM.coverage.bw","mode":1,"qtc":{"anglescale":1,"pr":255,"pg":0,"pb":127,"nr":255,"ng":0,"nb":0,"pth":"#000099","nth":"#800000","thtype":1,"thmin":0,"thmax":100,"thpercentile":90,"height":40,"summeth":1,"smooth":5,"bg":"#E3E3E3"},"metadata":{}},{"type":"bigwig","name":"E12_ATAC","url":"https://de.cyverse.org/anon-files/iplant/home/kennethlim206/Project_AY02_hub/BIGWIGS/E12_Ftag_WT_Cx2A_S7_L001_R1_001.bw","mode":1,"qtc":{"anglescale":1,"pr":0,"pg":0,"pb":230,"nr":255,"ng":0,"nb":0,"pth":"#000099","nth":"#800000","thtype":1,"thmin":0,"thmax":100,"thpercentile":90,"height":40,"summeth":1,"smooth":5},"metadata":{}},{"type":"bigwig","name":"E12_R_ATAC","url":"https://de.cyverse.org/anon-files/iplant/home/kennethlim206/Cortex_Project_Hub/BIGWIGS/e12_rost_VZ_ATAC_S1_L001_R1_001.bw","mode":1,"qtc":{"anglescale":1,"pr":0,"pg":0,"pb":230,"nr":255,"ng":0,"nb":0,"pth":"#000099","nth":"#800000","thtype":1,"thmin":0,"thmax":280,"thpercentile":90,"height":40,"summeth":1,"smooth":5},"metadata":{}},{"type":"bigwig","name":"E12_C_ATAC","url":"https://de.cyverse.org/anon-files/iplant/home/kennethlim206/Cortex_Project_Hub/BIGWIGS/e12_caud_VZ_ATAC_S8_L001_R1_001.bw","mode":1,"qtc":{"anglescale":1,"pr":0,"pg":0,"pb":230,"nr":255,"ng":0,"nb":0,"pth":"#000099","nth":"#800000","thtype":1,"thmin":0,"thmax":280,"thpercentile":90,"height":40,"summeth":1,"smooth":5},"metadata":{}},{"type":"interaction","name":"5k_interactions.txt","url":"http://epigenomegateway.wustl.edu/legacy/t/969910184.txt.gz","mode":4,"qtc":{"anglescale":1,"textcolor":"#000000","thtype":0,"fontsize":"8pt","fontfamily":"sans-serif","fontbold":false,"pr":184,"pg":0,"pb":138,"nr":0,"ng":99,"nb":133,"pcolorscore":75,"ncolorscore":0,"pfilterscore":0,"nfilterscore":0,"height":50},"metadata":{}},{"type":"interaction","name":"10k_interactions.txt","url":"http://epigenomegateway.wustl.edu/legacy/t/1452976132.txt.gz","mode":4,"qtc":{"anglescale":1,"textcolor":"#000000","thtype":0,"fontsize":"8pt","fontfamily":"sans-serif","fontbold":false,"pr":184,"pg":0,"pb":138,"nr":0,"ng":99,"nb":133,"pcolorscore":131,"ncolorscore":0,"pfilterscore":0,"nfilterscore":0,"height":50},"metadata":{}},{"type":"native_track","list":[{"name":"refGene","mode":3,"qtc":{"anglescale":1,"pr":255,"pg":0,"pb":0,"nr":0,"ng":0,"nb":230,"pth":"#800000","nth":"#000099","thtype":0,"thmin":0,"thmax":10,"thpercentile":95,"height":50,"summeth":1,"textcolor":"#000000","fontsize":"8pt","fontfamily":"sans-serif","fontbold":false,"bedcolor":"#002EB8"},"metadata":{},"details":{"source":"UCSC Genome Browser","download date":"Nov. 28, 2013"}}]},{"type":"bigwig","name":"E12.5 ATAC_CTF1 WT","url":"https://de.cyverse.org/anon-files/iplant/home/kennethlim206/Project_AY02_hub/BIGWIGS/E12_Ftag_CTF1-3_Cx_S2_L001_R1_001.bw","mode":"hide","qtc":{"height":40,"thtype":0},"metadata":{}},{"type":"bigwig","name":"E12.5 ATAC_CTF1 KO","url":"https://de.cyverse.org/anon-files/iplant/home/kennethlim206/Project_AY02_hub/BIGWIGS/E12_Ftag_CTF1-2_Cx_S1_L001_R1_001.bw","mode":"hide","qtc":{"height":40,"thtype":0},"metadata":{}},{"type":"bigwig","name":"E12.5 ATAC_EMX2 WT","url":"https://de.cyverse.org/anon-files/iplant/home/kennethlim206/Project_AY02_hub/BIGWIGS/E12_Ftag_Emx2-7_Cx_S10_L002_R1_001.bw","mode":"hide","qtc":{"height":40,"thtype":0},"metadata":{}},{"type":"bigwig","name":"E12.5 ATAC_EMX2 KO","url":"https://de.cyverse.org/anon-files/iplant/home/kennethlim206/Project_AY02_hub/BIGWIGS/E12_Ftag_Emx2-6_Cx_S9_L002_R1_001.bw","mode":"hide","qtc":{"height":40,"thtype":0},"metadata":{}},{"type":"metadata","vocabulary_set":{}},{"type":"coordinate_override","coord":"chr2,104763047,chr2,106290753"}]