[{"type":"bigwig","name":"RenLab-RNA-Seq-MEF","url":"http://egg.wustl.edu/d/mm9/GSM723775_1.bigWig","mode":1,"qtc":{"anglescale":1,"pr":0,"pg":0,"pb":230,"nr":255,"ng":0,"nb":0,"pth":"#000099","nth":"#800000","thtype":0,"thmin":0,"thmax":10,"thpercentile":90,"height":30,"summeth":1},"metadata":{"md1":["10036"],"md2":["25002"],"md3":["30002"]},"geolst":["GSM723775"]},{"type":"bigwig","name":"RenLab-RNA-Seq-E14.5-heart","url":"http://egg.wustl.edu/d/mm9/GSM850907_1.bigWig","mode":1,"qtc":{"anglescale":1,"pr":0,"pg":0,"pb":230,"nr":255,"ng":0,"nb":0,"pth":"#000099","nth":"#800000","thtype":0,"thmin":0,"thmax":10,"thpercentile":90,"height":30,"summeth":1,"smooth":5},"metadata":{"md1":["10075"],"md2":["25002"],"md3":["30002"]},"geolst":["GSM850907"]},{"type":"bigwig","name":"RenLab-RNA-Seq-E14.5-brain","url":"http://egg.wustl.edu/d/mm9/GSM850906_1.bigWig","mode":1,"qtc":{"anglescale":1,"pr":0,"pg":0,"pb":230,"nr":255,"ng":0,"nb":0,"pth":"#000099","nth":"#800000","thtype":0,"thmin":0,"thmax":10,"thpercentile":90,"height":30,"summeth":1,"smooth":5},"metadata":{"md1":["10076"],"md2":["25002"],"md3":["30002"]},"geolst":["GSM850906"]},{"type":"bigwig","name":"Stanford RnaSeq ES-E14","url":"http://egg.wustl.edu/d/mm9/GSM973235_3.bigWig","mode":1,"qtc":{"anglescale":1,"pr":40,"pg":113,"pb":155,"nr":255,"ng":0,"nb":0,"pth":"rgb(28,79,108)","nth":"#800000","thtype":0,"thmin":0,"thmax":10,"thpercentile":90,"height":30,"summeth":1},"metadata":{"md1":["10002"],"md2":["25002"],"md3":["30018"]},"geolst":["GSM973235"]},{"type":"bigwig","name":"UW DnaseSeq ZhBTc4 E0","url":"http://egg.wustl.edu/d/mm9/GSM1014152_1.bigWig","mode":1,"qtc":{"anglescale":1,"pr":0,"pg":77,"pb":0,"nr":255,"ng":0,"nb":0,"pth":"rgb(0,53,0)","nth":"#800000","thtype":0,"thmin":0,"thmax":10,"thpercentile":90,"height":30,"summeth":1},"metadata":{"md1":["10051"],"md2":["23001"],"md3":["30004"]},"geolst":["GSM1014152"]},{"type":"bigwig","name":"UW DnaseSeq ES-E14 E0","url":"http://egg.wustl.edu/d/mm9/GSM1014154_2.bigWig","mode":1,"qtc":{"anglescale":1,"pr":0,"pg":77,"pb":0,"nr":255,"ng":0,"nb":0,"pth":"rgb(0,53,0)","nth":"#800000","thtype":0,"thmin":0,"thmax":10,"thpercentile":90,"height":30,"summeth":1},"metadata":{"md1":["10002"],"md2":["23001"],"md3":["30004"]},"geolst":["GSM1014154"]},{"type":"bigwig","name":"UW DnaseSeq HeadlessEmbryo E11.5","url":"http://egg.wustl.edu/d/mm9/GSM1014172_2.bigWig","mode":1,"qtc":{"anglescale":1,"pr":0,"pg":77,"pb":0,"nr":255,"ng":0,"nb":0,"pth":"rgb(0,53,0)","nth":"#800000","thtype":0,"thmin":0,"thmax":10,"thpercentile":90,"height":30,"summeth":1},"metadata":{"md1":["10015"],"md2":["23001"],"md3":["30004"]},"geolst":["GSM1014172"]},{"type":"bigwig","name":"CCulture","url":"http://mitra.stanford.edu/kundaje/markov1/M9/ESCCrep1.shift.sort.bed_ES.bw","mode":1,"qtc":{"anglescale":1,"pr":0,"pg":0,"pb":230,"nr":255,"ng":0,"nb":0,"pth":"#000099","nth":"#800000","thtype":0,"thmin":0,"thmax":10,"thpercentile":90,"height":40,"summeth":1,"smooth":5},"metadata":{}},{"type":"bigwig","name":"30min","url":"http://mitra.stanford.edu/kundaje/markov1/M9/30mrep1.shift.sort.bed_ES.bw","mode":1,"qtc":{"anglescale":1,"pr":0,"pg":0,"pb":230,"nr":255,"ng":0,"nb":0,"pth":"#000099","nth":"#800000","thtype":0,"thmin":0,"thmax":10,"thpercentile":90,"height":40,"summeth":1,"smooth":5},"metadata":{}},{"type":"bigwig","name":"1hr","url":"http://mitra.stanford.edu/kundaje/markov1/M9/1rep1.shift.sort.bed_ES.bw","mode":1,"qtc":{"anglescale":1,"pr":0,"pg":0,"pb":230,"nr":255,"ng":0,"nb":0,"pth":"#000099","nth":"#800000","thtype":0,"thmin":0,"thmax":10,"thpercentile":90,"height":40,"summeth":1,"smooth":5},"metadata":{}},{"type":"bigwig","name":"2hr","url":"http://mitra.stanford.edu/kundaje/markov1/M9/2rep1.shift.sort.bed_ES.bw","mode":1,"qtc":{"anglescale":1,"pr":0,"pg":0,"pb":230,"nr":255,"ng":0,"nb":0,"pth":"#000099","nth":"#800000","thtype":0,"thmin":0,"thmax":10,"thpercentile":90,"height":40,"summeth":1,"smooth":5},"metadata":{}},{"type":"bigwig","name":"3hr","url":"http://mitra.stanford.edu/kundaje/markov1/M9/3rep1.shift.sort.bed_ES.bw","mode":1,"qtc":{"anglescale":1,"pr":0,"pg":0,"pb":230,"nr":255,"ng":0,"nb":0,"pth":"#000099","nth":"#800000","thtype":0,"thmin":0,"thmax":10,"thpercentile":90,"height":40,"summeth":1,"smooth":5},"metadata":{}},{"type":"bigwig","name":"6hr","url":"http://mitra.stanford.edu/kundaje/markov1/M9/6rep1.shift.sort.bed_ES.bw","mode":1,"qtc":{"anglescale":1,"pr":0,"pg":0,"pb":230,"nr":255,"ng":0,"nb":0,"pth":"#000099","nth":"#800000","thtype":0,"thmin":0,"thmax":10,"thpercentile":90,"height":40,"summeth":1,"smooth":5},"metadata":{}},{"type":"bigwig","name":"12hr","url":"http://mitra.stanford.edu/kundaje/markov1/M9/12rep1.shift.sort.bed_ES.bw","mode":1,"qtc":{"anglescale":1,"pr":0,"pg":0,"pb":230,"nr":255,"ng":0,"nb":0,"pth":"#000099","nth":"#800000","thtype":0,"thmin":0,"thmax":10,"thpercentile":90,"height":40,"summeth":1,"smooth":5},"metadata":{}},{"type":"bigwig","name":"24hr","url":"http://mitra.stanford.edu/kundaje/markov1/M9/24rep1.shift.sort.bed_ES.bw","mode":1,"qtc":{"anglescale":1,"pr":0,"pg":0,"pb":230,"nr":255,"ng":0,"nb":0,"pth":"#000099","nth":"#800000","thtype":0,"thmin":0,"thmax":10,"thpercentile":90,"height":40,"summeth":1,"smooth":5},"metadata":{}},{"type":"bigwig","name":"48hr","url":"http://mitra.stanford.edu/kundaje/markov1/M9/48rep1.shift.sort.bed_ES.bw","mode":1,"qtc":{"anglescale":1,"pr":0,"pg":0,"pb":230,"nr":255,"ng":0,"nb":0,"pth":"#000099","nth":"#800000","thtype":0,"thmin":0,"thmax":10,"thpercentile":90,"height":40,"summeth":1,"smooth":5},"metadata":{}},{"type":"bigwig","name":"48rep3","url":"http://mitra.stanford.edu/kundaje/markov1/M9/48rep3.shift.sort.bed_ES.bw","mode":1,"qtc":{"anglescale":1,"pr":0,"pg":0,"pb":230,"nr":255,"ng":0,"nb":0,"pth":"#000099","nth":"#800000","thtype":0,"thmin":0,"thmax":10,"thpercentile":90,"height":40,"summeth":1,"smooth":5},"metadata":{}},{"type":"bigwig","name":"3rep3","url":"http://mitra.stanford.edu/kundaje/markov1/M9/3rep3.shift.sort.bed_ES.bw","mode":1,"qtc":{"anglescale":1,"pr":0,"pg":0,"pb":230,"nr":255,"ng":0,"nb":0,"pth":"#000099","nth":"#800000","thtype":0,"thmin":0,"thmax":10,"thpercentile":90,"height":40,"summeth":1,"smooth":5},"metadata":{}},{"type":"bigwig","name":"3hrRNA","url":"http://mitra.stanford.edu/kundaje/tamai/mm9.bigwigs/3rep3.bw","mode":1,"qtc":{"anglescale":1,"pr":234,"pg":151,"pb":0,"nr":255,"ng":0,"nb":0,"pth":"#000099","nth":"#800000","thtype":0,"thmin":0,"thmax":10,"thpercentile":90,"height":40,"summeth":1},"metadata":{}},{"type":"bigwig","name":"16hrRNA","url":"http://mitra.stanford.edu/kundaje/tamai/mm9.bigwigs/16repA.bw","mode":1,"qtc":{"anglescale":1,"pr":234,"pg":151,"pb":0,"nr":255,"ng":0,"nb":0,"pth":"#000099","nth":"#800000","thtype":0,"thmin":0,"thmax":10,"thpercentile":90,"height":40,"summeth":1},"metadata":{}},{"type":"bigwig","name":"48hrRNA","url":"http://mitra.stanford.edu/kundaje/tamai/mm9.bigwigs/48repA.bw","mode":1,"qtc":{"anglescale":1,"pr":234,"pg":151,"pb":0,"nr":255,"ng":0,"nb":0,"pth":"#000099","nth":"#800000","thtype":0,"thmin":0,"thmax":10,"thpercentile":90,"height":40,"summeth":1},"metadata":{}},{"type":"native_track","list":[{"name":"refGene","mode":3,"qtc":{"anglescale":1,"pr":0,"pg":77,"pb":0,"nr":0,"ng":0,"nb":230,"pth":"#800000","nth":"#000099","thtype":0,"thmin":0,"thmax":10,"thpercentile":95,"height":50,"summeth":1,"textcolor":"#000000","fontsize":"8pt","fontfamily":"sans-serif","fontbold":false,"bedcolor":"#002EB8"},"metadata":{},"details":{"source":"UCSC Genome Browser","download date":"Nov. 28, 2013"}},{"name":"rmsk_all","mode":7,"qtc":{"anglescale":1,"pr":0,"pg":77,"pb":0,"nr":0,"ng":0,"nb":230,"pth":"#800000","nth":"#000099","thtype":0,"thmin":0,"thmax":10,"thpercentile":95,"height":25,"summeth":1,"textcolor":"#000000","fontsize":"8pt","fontfamily":"sans-serif","fontbold":false,"bedcolor":"#336666"},"showscoreidx":2,"scorenamelst":["Smith-Waterman score","SW score normalized by length","1-divergence%"],"scorescalelst":[{"type":0},{"type":0},{"type":0}],"metadata":{},"categories":{"1":["SINE - short interspersed nuclear elements","#cc0000"],"2":["LINE - long interspersed nuclear element","#FF6600"],"3":["LTR - long terminal repeat element","#006600"],"4":["DNA transposon","#4A72E8"],"5":["Simple repeat, micro-satellite","#AB833B"],"6":["Satellite repeat","#660000"],"7":["Low complexity repeat","#663333"],"8":["RNA repeat","#cc33ff"],"9":["Other repeats","#488E8E"],"10":["Unknown","#5C5C5C"],"-1":["no information","transparent"]}},{"name":"vertebratephastCons30way","mode":1,"qtc":{"anglescale":1,"pr":0,"pg":99,"pb":133,"nr":0,"ng":0,"nb":230,"pth":"rgb(0,69,93)","nth":"#000099","thtype":0,"thmin":0,"thmax":10,"thpercentile":90,"height":30,"summeth":1},"metadata":{},"details":{"source":"UCSC Genome Browser","download date":"Jan 1, 2012"}},{"name":"cpgisland","mode":3,"qtc":{"anglescale":1,"pr":0,"pg":77,"pb":0,"nr":0,"ng":0,"nb":230,"pth":"#800000","nth":"#000099","thtype":0,"thmin":0,"thmax":10,"thpercentile":95,"height":50,"summeth":1,"textcolor":"#000000","fontsize":"8pt","fontfamily":"sans-serif","fontbold":false,"bedcolor":"rgb(165, 42, 42)"},"metadata":{}},{"name":"wgEncodeCrgMapabilityAlign36mer","mode":1,"qtc":{"anglescale":1,"pr":0,"pg":0,"pb":230,"nr":255,"ng":0,"nb":0,"pth":"#000099","nth":"#800000","thtype":1,"thmin":0,"thmax":1,"thpercentile":90,"height":30,"summeth":1},"metadata":{},"details":{"dataType":"Mapability","subId":4945,"size":"36mer","uniqueness":"no more than 2 mismatches","software":"GEM","download":"http://hgdownload.cse.ucsc.edu/goldenPath/mm9/encodeDCC/wgEncodeMapability/"}},{"name":"ensGene","mode":3,"qtc":{"anglescale":1,"pr":0,"pg":77,"pb":0,"nr":0,"ng":0,"nb":230,"pth":"#800000","nth":"#000099","thtype":0,"thmin":0,"thmax":10,"thpercentile":95,"height":50,"summeth":1,"textcolor":"#000000","fontsize":"8pt","fontfamily":"sans-serif","fontbold":false,"bedcolor":"#336666"},"metadata":{},"details":{"source":"UCSC Genome Browser","download date":"Feb. 19, 2014"}}]},{"type":"bigwig","name":"3hr","url":"http://mitra.stanford.edu/kundaje/tamai/mm9.bigwigs/3rep3.bw","mode":"hide","qtc":{"height":40},"metadata":{}},{"type":"bigwig","name":"16hr","url":"http://mitra.stanford.edu/kundaje/tamai/mm9.bigwigs/16repA.bw","mode":"hide","qtc":{"height":40},"metadata":{}},{"type":"metadata","vocabulary_set":{"md1":"http://vizhub.wustl.edu/metadata/mouse/Samples","md2":"http://vizhub.wustl.edu/metadata/Experimental_assays","md3":"http://vizhub.wustl.edu/metadata/Institutions"},"show_terms":{"md1":["Sample"],"md2":["Assay"]}},{"type":"coordinate_override","coord":"chr6,122618692,chr6,122703424"}]