[{"type":"bedgraph","name":"wgbs raw","url":"http://wangftp.wustl.edu/~yhe/ma_cortex3/deepHM_11_29/wgbs_raw.gz","mode":1,"qtc":{"anglescale":1,"pr":155,"pg":80,"pb":50,"nr":255,"ng":0,"nb":0,"pth":"rgb(40,113,155)","nth":"#800000","thtype":1,"thmin":0,"thmax":1,"thpercentile":90,"height":80,"summeth":1},"metadata":{}},{"type":"bedgraph","name":"wgbs cov","url":"http://wangftp.wustl.edu/~yhe/ma_cortex3/deepHM_11_29/wgbs_cov.gz","mode":1,"qtc":{"anglescale":1,"pr":74,"pg":38,"pb":24,"nr":255,"ng":0,"nb":0,"pth":"rgb(40,113,155)","nth":"#800000","thtype":1,"thmin":0,"thmax":30,"thpercentile":90,"height":80,"summeth":1},"metadata":{}},{"type":"bedgraph","name":"gold hmc+mc","url":"http://wangftp.wustl.edu/~yhe/ma_cortex3/deepHM_11_29/gold_sum.gz","mode":1,"qtc":{"anglescale":1,"pr":155,"pg":80,"pb":50,"nr":255,"ng":0,"nb":0,"pth":"rgb(40,113,155)","nth":"#800000","thtype":1,"thmin":0,"thmax":1,"thpercentile":90,"height":80,"summeth":1},"metadata":{}},{"type":"bedgraph","name":"new pred hmc+mc","url":"http://wangftp.wustl.edu/~yhe/ma_cortex3/deepHM_2_3/pred_sum.gz","mode":1,"qtc":{"anglescale":1,"pr":155,"pg":80,"pb":50,"nr":255,"ng":0,"nb":0,"pth":"rgb(40,113,155)","nth":"#800000","thtype":1,"thmin":0,"thmax":1,"thpercentile":90,"height":80,"summeth":1},"metadata":{}},{"type":"bedgraph","name":"old pred hmc+mc","url":"http://wangftp.wustl.edu/~yhe/ma_cortex3/deepHM_1_8/all_pred_sum.gz","mode":1,"qtc":{"anglescale":1,"pr":230,"pg":118,"pb":74,"nr":255,"ng":0,"nb":0,"pth":"rgb(40,113,155)","nth":"#800000","thtype":1,"thmin":0,"thmax":1,"thpercentile":90,"height":80,"summeth":1},"metadata":{}},{"type":"bedgraph","name":"gold mc","url":"http://wangftp.wustl.edu/~yhe/ma_cortex3/deepHM_11_29/gold_mc.gz","mode":1,"qtc":{"anglescale":1,"pr":65,"pg":155,"pb":82,"nr":255,"ng":0,"nb":0,"pth":"rgb(40,113,155)","nth":"#800000","thtype":1,"thmin":0,"thmax":1,"thpercentile":90,"height":80,"summeth":1},"metadata":{}},{"type":"bedgraph","name":"new pred mc","url":"http://wangftp.wustl.edu/~yhe/ma_cortex3/deepHM_2_3/pred_mc.gz","mode":1,"qtc":{"anglescale":1,"pr":65,"pg":155,"pb":82,"nr":255,"ng":0,"nb":0,"pth":"rgb(40,113,155)","nth":"#800000","thtype":1,"thmin":0,"thmax":1,"thpercentile":90,"height":80,"summeth":1},"metadata":{}},{"type":"bedgraph","name":"old pred mc","url":"http://wangftp.wustl.edu/~yhe/ma_cortex3/deepHM_1_8/all_pred_mc.gz","mode":1,"qtc":{"anglescale":1,"pr":94,"pg":224,"pb":119,"nr":255,"ng":0,"nb":0,"pth":"rgb(40,113,155)","nth":"#800000","thtype":1,"thmin":0,"thmax":1,"thpercentile":90,"height":80,"summeth":1},"metadata":{}},{"type":"bedgraph","name":"tab raw","url":"http://wangftp.wustl.edu/~yhe/ma_cortex3/deepHM_11_29/tab_raw.gz","mode":1,"qtc":{"anglescale":1,"pr":155,"pg":85,"pb":144,"nr":255,"ng":0,"nb":0,"pth":"rgb(40,113,155)","nth":"#800000","thtype":1,"thmin":0,"thmax":0.5,"thpercentile":90,"height":80,"summeth":1},"metadata":{}},{"type":"bedgraph","name":"tab cov","url":"http://wangftp.wustl.edu/~yhe/ma_cortex3/deepHM_11_29/tab_cov.gz","mode":1,"qtc":{"anglescale":1,"pr":66,"pg":36,"pb":62,"nr":255,"ng":0,"nb":0,"pth":"rgb(40,113,155)","nth":"#800000","thtype":1,"thmin":0,"thmax":30,"thpercentile":90,"height":80,"summeth":1},"metadata":{}},{"type":"bedgraph","name":"gold hmc","url":"http://wangftp.wustl.edu/~yhe/ma_cortex3/deepHM_11_29/gold_hmc.gz","mode":1,"qtc":{"anglescale":1,"pr":155,"pg":85,"pb":144,"nr":255,"ng":0,"nb":0,"pth":"rgb(40,113,155)","nth":"#800000","thtype":1,"thmin":0,"thmax":0.5,"thpercentile":90,"height":80,"summeth":1},"metadata":{}},{"type":"bedgraph","name":"new pred hmc","url":"http://wangftp.wustl.edu/~yhe/ma_cortex3/deepHM_2_3/pred_hmc.gz","mode":1,"qtc":{"anglescale":1,"pr":155,"pg":85,"pb":144,"nr":255,"ng":0,"nb":0,"pth":"rgb(40,113,155)","nth":"#800000","thtype":1,"thmin":0,"thmax":0.5,"thpercentile":90,"height":80,"summeth":1},"metadata":{}},{"type":"bedgraph","name":"old pred hmc","url":"http://wangftp.wustl.edu/~yhe/ma_cortex3/deepHM_1_8/all_pred_hmc.gz","mode":1,"qtc":{"anglescale":1,"pr":235,"pg":129,"pb":218,"nr":255,"ng":0,"nb":0,"pth":"rgb(40,113,155)","nth":"#800000","thtype":1,"thmin":0,"thmax":0.5,"thpercentile":90,"height":80,"summeth":1},"metadata":{}},{"type":"bedgraph","name":"medip","url":"http://wangftp.wustl.edu/~yhe/ma_cortex3/medip2_sort.gz","mode":1,"qtc":{"anglescale":1,"pr":40,"pg":113,"pb":155,"nr":255,"ng":0,"nb":0,"pth":"rgb(40,113,155)","nth":"#800000","thtype":1,"thmin":0,"thmax":50,"thpercentile":90,"height":80,"summeth":1},"metadata":{}},{"type":"bedgraph","name":"mre","url":"http://wangftp.wustl.edu/~yhe/ma_cortex3/mre2_sort.gz","mode":1,"qtc":{"anglescale":1,"pr":40,"pg":113,"pb":155,"nr":255,"ng":0,"nb":0,"pth":"rgb(40,113,155)","nth":"#800000","thtype":1,"thmin":0,"thmax":10,"thpercentile":90,"height":80,"summeth":1},"metadata":{}},{"type":"bedgraph","name":"hmcSeal","url":"http://wangftp.wustl.edu/~yhe/ma_cortex3/hmcSeal2_sort.gz","mode":1,"qtc":{"anglescale":1,"pr":40,"pg":113,"pb":155,"nr":255,"ng":0,"nb":0,"pth":"rgb(40,113,155)","nth":"#800000","thtype":1,"thmin":0,"thmax":50,"thpercentile":90,"height":80,"summeth":1},"metadata":{}},{"type":"bedgraph","name":"H3K27ac 1","url":"http://wangftp.wustl.edu/~yhe/ma_cortex3/h3k27ac_peak/H3K27ac.gz","mode":1,"qtc":{"anglescale":1,"pr":40,"pg":113,"pb":155,"nr":255,"ng":0,"nb":0,"pth":"rgb(40,113,155)","nth":"#800000","thtype":1,"thmin":0,"thmax":20,"thpercentile":90,"height":80,"summeth":1},"metadata":{}},{"type":"bedgraph","name":"H3K27ac 2","url":"http://wangftp.wustl.edu/~yhe/ma_cortex3/h3k27ac_peak/cortex2_H3K27ac.gz","mode":1,"qtc":{"anglescale":1,"pr":40,"pg":113,"pb":155,"nr":255,"ng":0,"nb":0,"pth":"rgb(40,113,155)","nth":"#800000","thtype":1,"thmin":0,"thmax":20,"thpercentile":90,"height":80,"summeth":1},"metadata":{}},{"type":"bigwig","name":"frontal cortex RNA-seq raw minus strand signal","url":"http://epgg-test.wustl.edu/d/mm9/ENCFF001ITT.bigWig","mode":1,"qtc":{"anglescale":1,"pr":0,"pg":0,"pb":230,"nr":255,"ng":0,"nb":0,"pth":"rgb(44, 153, 77)","nth":"#800000","thtype":1,"thmin":0,"thmax":100,"thpercentile":90,"height":25,"summeth":1},"metadata":{"md1":["25002"],"md2":["30006"],"md3":["10058"]},"details":{"Antibody accession":"","Assay":"RNA-seq","Assembly":"mm9","Biological replicate":"2","Biosample Age":"8 week","Biosample life stage":"adult","Biosample organism":"Mus musculus","Biosample phase":"","Biosample sex":"unknown","Biosample subcellular fraction term name":"","Biosample synchronization stage":"","Biosample term id":"UBERON:0001870","Biosample term name":"frontal cortex","Biosample treatments":"","Biosample type":"tissue","Derived from":"","Experiment accession":"ENCSR000BZS","Experiment date released":"2012-09-05","Experiment target":"","File accession":"ENCFF001ITT","File download URL":"https://www.encodeproject.org/files/ENCFF001ITT/@@download/ENCFF001ITT.bigWig","File format":"bigWig","Lab":"Thomas Gingeras, CSHL","Library crosslinking method":"","Library depleted in":"rRNA","Library extraction method":"see document","Library fragmentation method":"see document","Library lysis method":"see document","Library made from":"polyadenylated mRNA","Library size range":">200","Output type":"raw minus strand signal","Paired end":"","Paired with":"","Platform":"","Project":"ENCODE","RBNS protein concentration":"","Read length":"","Run type":"","Size":"328891390","Technical replicate":"1","md5sum":"bc4aa0bca59116d1e0b0c73efa5555eb"}},{"type":"bigwig","name":"frontal cortex RNA-seq raw plus strand signal","url":"http://epgg-test.wustl.edu/d/mm9/ENCFF001ITU.bigWig","mode":1,"qtc":{"anglescale":1,"pr":0,"pg":0,"pb":230,"nr":255,"ng":0,"nb":0,"pth":"rgb(44, 153, 77)","nth":"#800000","thtype":1,"thmin":0,"thmax":100,"thpercentile":90,"height":25,"summeth":1},"metadata":{"md1":["25002"],"md2":["30006"],"md3":["10058"]},"details":{"Antibody accession":"","Assay":"RNA-seq","Assembly":"mm9","Biological replicate":"1","Biosample Age":"8 week","Biosample life stage":"adult","Biosample organism":"Mus musculus","Biosample phase":"","Biosample sex":"unknown","Biosample subcellular fraction term name":"","Biosample synchronization stage":"","Biosample term id":"UBERON:0001870","Biosample term name":"frontal cortex","Biosample treatments":"","Biosample type":"tissue","Derived from":"","Experiment accession":"ENCSR000BZS","Experiment date released":"2012-09-05","Experiment target":"","File accession":"ENCFF001ITU","File download URL":"https://www.encodeproject.org/files/ENCFF001ITU/@@download/ENCFF001ITU.bigWig","File format":"bigWig","Lab":"Thomas Gingeras, CSHL","Library crosslinking method":"","Library depleted in":"rRNA","Library extraction method":"see document","Library fragmentation method":"see document","Library lysis method":"see document","Library made from":"polyadenylated mRNA","Library size range":">200","Output type":"raw plus strand signal","Paired end":"","Paired with":"","Platform":"","Project":"ENCODE","RBNS protein concentration":"","Read length":"","Run type":"","Size":"390522969","Technical replicate":"1","md5sum":"3d824109e600913c8125b3c32abf664c"}},{"type":"native_track","list":[{"name":"refGene","mode":3,"qtc":{"anglescale":1,"pr":255,"pg":0,"pb":0,"nr":0,"ng":0,"nb":230,"pth":"#800000","nth":"#000099","thtype":0,"thmin":0,"thmax":10,"thpercentile":95,"height":50,"summeth":1,"textcolor":"#000000","fontsize":"8pt","fontfamily":"sans-serif","fontbold":false,"bedcolor":"#002EB8"},"metadata":{},"details":{"source":"UCSC Genome Browser","download date":"Nov. 28, 2013"}},{"name":"rmsk_all","mode":7,"qtc":{"anglescale":1,"pr":255,"pg":0,"pb":0,"nr":0,"ng":0,"nb":230,"pth":"#800000","nth":"#000099","thtype":0,"thmin":0,"thmax":10,"thpercentile":95,"height":35,"summeth":1,"textcolor":"#000000","fontsize":"8pt","fontfamily":"sans-serif","fontbold":false,"bedcolor":"#336666"},"showscoreidx":2,"scorenamelst":["Smith-Waterman score","SW score normalized by length","1-divergence%"],"scorescalelst":[{"type":0},{"type":0},{"type":0}],"metadata":{},"categories":{"1":["SINE - short interspersed nuclear elements","#cc0000"],"2":["LINE - long interspersed nuclear element","#FF6600"],"3":["LTR - long terminal repeat element","#006600"],"4":["DNA transposon","#4A72E8"],"5":["Simple repeat, micro-satellite","#AB833B"],"6":["Satellite repeat","#660000"],"7":["Low complexity repeat","#663333"],"8":["RNA repeat","#cc33ff"],"9":["Other repeats","#488E8E"],"10":["Unknown","#5C5C5C"],"-1":["no information","transparent"]}}]},{"type":"metadata","vocabulary_set":{"md1":"http://vizhub.wustl.edu/metadata/Experimental_assays","md2":"http://vizhub.wustl.edu/metadata/Institutions","md3":"http://vizhub.wustl.edu/metadata/mouse/Sample-encode"},"show_terms":{"md1":["Assay"],"md3":["Sample"]}},{"type":"coordinate_override","coord":"chr5,115639923,chr5,115649191"}]