[{"type":"bigbed","name":"ICR (mm9)","url":"http://jeremy-bio.sysbiol.cam.ac.uk/UCSC/EPIGENOME_BROWSER/BigBed/mm9_Imprinted_ICRs.bb","mode":3,"qtc":{"anglescale":1,"pr":255,"pg":0,"pb":0,"nr":0,"ng":0,"nb":230,"pth":"#800000","nth":"#000099","thtype":0,"thmin":0,"thmax":10,"thpercentile":95,"height":50,"summeth":1,"textcolor":"#000000","fontsize":"8pt","fontfamily":"sans-serif","fontbold":false,"bedcolor":"rgb(229, 0, 229)"},"metadata":{}},{"type":"bed","name":"2017.05.26_1423peaks_mm9.bed","url":"http://epigenomegateway.wustl.edu/browser/t/1091845229.txt.gz","mode":3,"qtc":{"anglescale":1,"pr":255,"pg":0,"pb":0,"nr":0,"ng":0,"nb":230,"pth":"#800000","nth":"#000099","thtype":0,"thmin":0,"thmax":10,"thpercentile":95,"height":50,"summeth":1,"textcolor":"#000000","fontsize":"8pt","fontfamily":"sans-serif","fontbold":false,"bedcolor":"rgb(188, 0, 188)"},"metadata":{}},{"type":"bedgraph","name":"GV Oocyte (BL6) Kobayashi2012","url":"http://jeremy-bio.sysbiol.cam.ac.uk/UCSC/EPIGENOME_BROWSER/Kobayashi_et_al_2012/Methylome_GV-oocyte_Kobayashi2012.bedgraph.gz","mode":1,"qtc":{"anglescale":1,"pr":255,"pg":22,"pb":22,"nr":255,"ng":0,"nb":0,"pth":"#000099","nth":"#800000","thtype":1,"thmin":0,"thmax":100,"thpercentile":90,"height":45,"summeth":1,"barplotbg":"rgb(192, 192, 192)","bg":null},"metadata":{}},{"type":"bedgraph","name":"Sperm (BL6) Kobayashi2012","url":"http://jeremy-bio.sysbiol.cam.ac.uk/UCSC/EPIGENOME_BROWSER/Kobayashi_et_al_2012/Methylome_Sperm_Kobayashi2012.bedgraph.gz","mode":1,"qtc":{"anglescale":1,"pr":4,"pg":68,"pb":233,"nr":255,"ng":0,"nb":0,"pth":"#000099","nth":"#800000","thtype":1,"thmin":0,"thmax":100,"thpercentile":90,"height":45,"summeth":1,"barplotbg":"rgb(192, 192, 192)","bg":null},"metadata":{}},{"type":"bedgraph","name":"Blastocyst (BL6) Kobayashi2012","url":"http://jeremy-bio.sysbiol.cam.ac.uk/UCSC/EPIGENOME_BROWSER/Kobayashi_et_al_2012/Methylome_Blastocyst_Kobayashi2012.bedgraph.gz","mode":1,"qtc":{"anglescale":1,"pr":92,"pg":33,"pb":128,"nr":255,"ng":0,"nb":0,"pth":"#000099","nth":"#800000","thtype":1,"thmin":0,"thmax":100,"thpercentile":90,"height":45,"summeth":1,"bg":null,"barplotbg":"rgb(192, 192, 192)"},"metadata":{}},{"type":"bedgraph","name":"ESCs (BL6) Kobayashi2012","url":"http://jeremy-bio.sysbiol.cam.ac.uk/UCSC/EPIGENOME_BROWSER/Kobayashi_et_al_2012/Methylome_ESC_Kobayashi2012.bedgraph.gz","mode":1,"qtc":{"anglescale":1,"pr":10,"pg":78,"pb":128,"nr":255,"ng":0,"nb":0,"pth":"#000099","nth":"#800000","thtype":1,"thmin":0,"thmax":100,"thpercentile":90,"height":45,"summeth":1,"bg":null,"barplotbg":"rgb(192, 192, 192)"},"metadata":{}},{"type":"bedgraph","name":"8cell (BDF1) Smith2017","url":"http://jeremy-bio.sysbiol.cam.ac.uk/UCSC/EPIGENOME_BROWSER/Smith_et_al_2017/GSM2229980_Mouse_8cell.bedgraph.gz","mode":1,"qtc":{"anglescale":1,"pr":66,"pg":123,"pb":230,"nr":255,"ng":0,"nb":0,"pth":"#000099","nth":"#800000","thtype":1,"thmin":0,"thmax":100,"thpercentile":90,"height":45,"summeth":1,"barplotbg":"rgb(192, 192, 192)","bg":null},"metadata":{}},{"type":"bedgraph","name":"ICM (BDF1) Smith2017","url":"http://jeremy-bio.sysbiol.cam.ac.uk/UCSC/EPIGENOME_BROWSER/Smith_et_al_2017/GSM2229982_Mouse_ICM.bedgraph.gz","mode":1,"qtc":{"anglescale":1,"pr":230,"pg":120,"pb":50,"nr":255,"ng":0,"nb":0,"pth":"#000099","nth":"#800000","thtype":1,"thmin":0,"thmax":100,"thpercentile":90,"height":45,"summeth":1,"barplotbg":"rgb(192, 192, 192)","bg":null},"metadata":{}},{"type":"bedgraph","name":"TE (BDF1) Smith2017","url":"http://jeremy-bio.sysbiol.cam.ac.uk/UCSC/EPIGENOME_BROWSER/Smith_et_al_2017/GSM2229984_Mouse_TE.bedgraph.gz","mode":1,"qtc":{"anglescale":1,"pr":52,"pg":179,"pb":230,"nr":255,"ng":0,"nb":0,"pth":"#000099","nth":"#800000","thtype":1,"thmin":0,"thmax":100,"thpercentile":90,"height":45,"summeth":1,"barplotbg":"rgb(192, 192, 192)","bg":null},"metadata":{}},{"type":"bedgraph","name":"Epiblast (BDF1) Smith2017","url":"http://jeremy-bio.sysbiol.cam.ac.uk/UCSC/EPIGENOME_BROWSER/Smith_et_al_2017/GSM2229986_Mouse_Epiblast.bedgraph.gz","mode":1,"qtc":{"anglescale":1,"pr":200,"pg":121,"pb":23,"nr":255,"ng":0,"nb":0,"pth":"#000099","nth":"#800000","thtype":1,"thmin":0,"thmax":100,"thpercentile":90,"height":45,"summeth":1,"barplotbg":"rgb(192, 192, 192)","bg":null},"metadata":{}},{"type":"bedgraph","name":"ExE (BDF1) Smith2017","url":"http://jeremy-bio.sysbiol.cam.ac.uk/UCSC/EPIGENOME_BROWSER/Smith_et_al_2017/GSM2229988_Mouse_ExE.bedgraph.gz","mode":1,"qtc":{"anglescale":1,"pr":181,"pg":53,"pb":197,"nr":255,"ng":0,"nb":0,"pth":"#000099","nth":"#800000","thtype":1,"thmin":0,"thmax":100,"thpercentile":90,"height":45,"summeth":1,"barplotbg":"rgb(192, 192, 192)","bg":null},"metadata":{}},{"type":"native_track","list":[{"name":"refGene","mode":3,"qtc":{"anglescale":1,"pr":255,"pg":0,"pb":0,"nr":0,"ng":0,"nb":230,"pth":"#800000","nth":"#000099","thtype":0,"thmin":0,"thmax":10,"thpercentile":95,"height":50,"summeth":1,"textcolor":"#000000","fontsize":"8pt","fontfamily":"sans-serif","fontbold":false,"bedcolor":"#002EB8"},"metadata":{},"details":{"source":"UCSC Genome Browser","download date":"Nov. 28, 2013"}},{"name":"cpgisland","mode":3,"qtc":{"anglescale":1,"pr":255,"pg":0,"pb":0,"nr":0,"ng":0,"nb":230,"pth":"#800000","nth":"#000099","thtype":0,"thmin":0,"thmax":10,"thpercentile":95,"height":50,"summeth":1,"textcolor":"#000000","fontsize":"8pt","fontfamily":"sans-serif","fontbold":false,"bedcolor":"rgb(91, 173, 91)"},"metadata":{}},{"name":"rmsk_all","mode":7,"qtc":{"anglescale":1,"pr":255,"pg":0,"pb":0,"nr":0,"ng":0,"nb":230,"pth":"#800000","nth":"#000099","thtype":0,"thmin":0,"thmax":10,"thpercentile":95,"height":35,"summeth":1,"textcolor":"#000000","fontsize":"8pt","fontfamily":"sans-serif","fontbold":false,"bedcolor":"#336666"},"showscoreidx":2,"scorenamelst":["Smith-Waterman score","SW score normalized by length","1-divergence%"],"scorescalelst":[{"type":0},{"type":0},{"type":0}],"metadata":{},"categories":{"1":["SINE - short interspersed nuclear elements","#cc0000"],"2":["LINE - long interspersed nuclear element","#FF6600"],"3":["LTR - long terminal repeat element","#006600"],"4":["DNA transposon","#4A72E8"],"5":["Simple repeat, micro-satellite","#AB833B"],"6":["Satellite repeat","#660000"],"7":["Low complexity repeat","#663333"],"8":["RNA repeat","#cc33ff"],"9":["Other repeats","#488E8E"],"10":["Unknown","#5C5C5C"],"-1":["no information","transparent"]}},{"name":"gc5Base","mode":1,"qtc":{"anglescale":1,"pr":71,"pg":133,"pb":194,"nr":255,"ng":0,"nb":0,"pth":"rgb(71,71,194)","nth":"#800000","thtype":1,"thmin":0,"thmax":100,"thpercentile":90,"height":50,"summeth":1},"metadata":{}}]},{"type":"bedgraph","name":"GVOs (BL6) Shirane2013","url":"http://jeremy-bio.sysbiol.cam.ac.uk/UCSC/EPIGENOME_BROWSER/Shirane_et_al_2013/Methylome_Oocyte-GV_Shirane2013.bedgraph.gz","mode":"hide","qtc":{"height":40,"barplotbg":"rgb(192, 192, 192)","pr":255,"pg":22,"pb":22,"thtype":1,"thmin":0,"thmax":100,"summeth":1},"metadata":{}},{"type":"bedgraph","name":"NGOs (BL6) Shirane2013","url":"http://jeremy-bio.sysbiol.cam.ac.uk/UCSC/EPIGENOME_BROWSER/Shirane_et_al_2013/Methylome_Oocyte-NG_Shirane2013.bedgraph.gz","mode":"hide","qtc":{"height":40,"barplotbg":"rgb(192, 192, 192)","pr":255,"pg":22,"pb":22,"thtype":1,"thmin":0,"thmax":100,"summeth":1},"metadata":{}},{"type":"bedgraph","name":"E6.5 EpiBlast (BL6) Seisenberger2012","url":"http://jeremy-bio.sysbiol.cam.ac.uk/UCSC/EPIGENOME_BROWSER/Seisenberger_et_al_2012/Methylome_E6.5EpiBlast_Seisenberger2012.bedgraph.gz","mode":"hide","qtc":{"anglescale":1,"pr":0,"pg":0,"pb":146,"nr":255,"ng":0,"nb":0,"pth":"#000099","nth":"#800000","thtype":1,"thmin":0,"thmax":100,"thpercentile":90,"height":50,"summeth":1,"barplotbg":"rgb(192, 192, 192)"},"metadata":{}},{"type":"metadata","vocabulary_set":{}},{"type":"coordinate_override","coord":"chr17,12933605,chr17,12937352"}]