[{"type":"bedgraph","name":"old cortex wgbs cov","url":"https://wangftp.wustl.edu/~yhe/ma_cortex3/deepHM_11_29/wgbs_cov.gz","mode":1,"qtc":{"anglescale":1,"pr":155,"pg":39,"pb":28,"nr":255,"ng":0,"nb":0,"pth":"rgb(155,39,28)","nth":"#800000","thtype":1,"thmin":0,"thmax":30,"thpercentile":90,"height":80,"summeth":1},"metadata":{}},{"type":"bedgraph","name":"old cortex wgbs raw","url":"https://wangftp.wustl.edu/~yhe/ma_cortex3/deepHM_11_29/wgbs_raw.gz","mode":1,"qtc":{"anglescale":1,"pr":155,"pg":39,"pb":28,"nr":255,"ng":0,"nb":0,"pth":"rgb(155,39,28)","nth":"#800000","thtype":1,"thmin":0,"thmax":1,"thpercentile":90,"height":80,"summeth":1},"metadata":{}},{"type":"bedgraph","name":"new cortex wgbs cov","url":"https://wangftp.wustl.edu/~yhe/ma_cortex3/new_data2/new_bs_cov.gz","mode":1,"qtc":{"anglescale":1,"pr":155,"pg":39,"pb":28,"nr":255,"ng":0,"nb":0,"pth":"rgb(155,39,28)","nth":"#800000","thtype":1,"thmin":0,"thmax":30,"thpercentile":90,"height":80,"summeth":1},"metadata":{}},{"type":"bedgraph","name":"new cortex wgbs raw","url":"https://wangftp.wustl.edu/~yhe/ma_cortex3/new_data2/new_bs.gz","mode":1,"qtc":{"anglescale":1,"pr":155,"pg":39,"pb":28,"nr":255,"ng":0,"nb":0,"pth":"rgb(155,39,28)","nth":"#800000","thtype":1,"thmin":0,"thmax":1,"thpercentile":90,"height":80,"summeth":1},"metadata":{}},{"type":"bedgraph","name":"BS_validation","url":"https://wangftp.wustl.edu/~yhe/ma_cortex3/deepHM_5_1/validation/BS_validation.gz","mode":1,"qtc":{"anglescale":1,"pr":155,"pg":39,"pb":28,"nr":255,"ng":0,"nb":0,"pth":"rgb(155,39,28)","nth":"#800000","thtype":1,"thmin":0,"thmax":1,"thpercentile":90,"height":80,"summeth":1},"metadata":{}},{"type":"bedgraph","name":"old cortex tab cov","url":"https://wangftp.wustl.edu/~yhe/ma_cortex3/deepHM_11_29/tab_cov.gz","mode":1,"qtc":{"anglescale":1,"pr":76,"pg":155,"pb":93,"nr":255,"ng":0,"nb":0,"pth":"rgb(76,155,93)","nth":"#800000","thtype":1,"thmin":0,"thmax":30,"thpercentile":90,"height":80,"summeth":1},"metadata":{}},{"type":"bedgraph","name":"old cortex tab raw","url":"https://wangftp.wustl.edu/~yhe/ma_cortex3/deepHM_11_29/tab_raw.gz","mode":1,"qtc":{"anglescale":1,"pr":76,"pg":155,"pb":93,"nr":255,"ng":0,"nb":0,"pth":"rgb(76,155,93)","nth":"#800000","thtype":1,"thmin":0,"thmax":0.5,"thpercentile":90,"height":80,"summeth":1},"metadata":{}},{"type":"bedgraph","name":"new cortex tab cov","url":"https://wangftp.wustl.edu/~yhe/ma_cortex3/new_data2/new_tab_cov.gz","mode":1,"qtc":{"anglescale":1,"pr":76,"pg":155,"pb":93,"nr":255,"ng":0,"nb":0,"pth":"rgb(76,155,93)","nth":"#800000","thtype":1,"thmin":0,"thmax":30,"thpercentile":90,"height":80,"summeth":1},"metadata":{}},{"type":"bedgraph","name":"new cortex tab raw","url":"https://wangftp.wustl.edu/~yhe/ma_cortex3/new_data2/new_tab.gz","mode":1,"qtc":{"anglescale":1,"pr":76,"pg":155,"pb":93,"nr":255,"ng":0,"nb":0,"pth":"rgb(76,155,93)","nth":"#800000","thtype":1,"thmin":0,"thmax":0.5,"thpercentile":90,"height":80,"summeth":1},"metadata":{}},{"type":"bedgraph","name":"Tet_validation","url":"https://wangftp.wustl.edu/~yhe/ma_cortex3/deepHM_5_1/validation/Tet_validation.gz","mode":1,"qtc":{"anglescale":1,"pr":76,"pg":155,"pb":93,"nr":255,"ng":0,"nb":0,"pth":"rgb(76,155,93)","nth":"#800000","thtype":1,"thmin":0,"thmax":0.5,"thpercentile":90,"height":80,"summeth":1},"metadata":{}},{"type":"bedgraph","name":"cortx medip","url":"https://wangftp.wustl.edu/~yhe/ma_cortex3/medip2_sort.gz","mode":1,"qtc":{"anglescale":1,"pr":40,"pg":113,"pb":155,"nr":255,"ng":0,"nb":0,"pth":"rgb(40,113,155)","nth":"#800000","thtype":1,"thmin":0,"thmax":50,"thpercentile":90,"height":80,"summeth":1},"metadata":{}},{"type":"bedgraph","name":"cortex mre","url":"https://wangftp.wustl.edu/~yhe/ma_cortex3/mre2_sort.gz","mode":1,"qtc":{"anglescale":1,"pr":40,"pg":113,"pb":155,"nr":255,"ng":0,"nb":0,"pth":"rgb(40,113,155)","nth":"#800000","thtype":1,"thmin":0,"thmax":10,"thpercentile":90,"height":80,"summeth":1},"metadata":{}},{"type":"bedgraph","name":"cortex hmcSeal","url":"https://wangftp.wustl.edu/~yhe/ma_cortex3/hmcSeal2_sort.gz","mode":1,"qtc":{"anglescale":1,"pr":40,"pg":113,"pb":155,"nr":255,"ng":0,"nb":0,"pth":"rgb(40,113,155)","nth":"#800000","thtype":1,"thmin":0,"thmax":50,"thpercentile":90,"height":80,"summeth":1},"metadata":{}},{"type":"native_track","list":[{"name":"refGene","mode":3,"qtc":{"anglescale":1,"pr":255,"pg":0,"pb":0,"nr":0,"ng":0,"nb":230,"pth":"#800000","nth":"#000099","thtype":0,"thmin":0,"thmax":10,"thpercentile":95,"height":50,"summeth":1,"textcolor":"#000000","fontsize":"8pt","fontfamily":"sans-serif","fontbold":false,"bedcolor":"#002EB8"},"metadata":{},"details":{"source":"UCSC Genome Browser","download date":"Nov. 28, 2013"}},{"name":"rmsk_all","mode":7,"qtc":{"anglescale":1,"pr":255,"pg":0,"pb":0,"nr":0,"ng":0,"nb":230,"pth":"#800000","nth":"#000099","thtype":0,"thmin":0,"thmax":10,"thpercentile":95,"height":35,"summeth":1,"textcolor":"#000000","fontsize":"8pt","fontfamily":"sans-serif","fontbold":false,"bedcolor":"#336666"},"showscoreidx":2,"scorenamelst":["Smith-Waterman score","SW score normalized by length","1-divergence%"],"scorescalelst":[{"type":0},{"type":0},{"type":0}],"metadata":{},"categories":{"1":["SINE - short interspersed nuclear elements","#cc0000"],"2":["LINE - long interspersed nuclear element","#FF6600"],"3":["LTR - long terminal repeat element","#006600"],"4":["DNA transposon","#4A72E8"],"5":["Simple repeat, micro-satellite","#AB833B"],"6":["Satellite repeat","#660000"],"7":["Low complexity repeat","#663333"],"8":["RNA repeat","#cc33ff"],"9":["Other repeats","#488E8E"],"10":["Unknown","#5C5C5C"],"-1":["no information","transparent"]}}]},{"type":"metadata","vocabulary_set":{}},{"type":"run_genesetview","list":[{"c":"chr11","a":77705491,"a1":77705491,"b":77705858,"b1":77705858,"isgene":true,"name":"chr11:77705606-77705743","strand":"+","f3a":77705743,"f3b":77705858,"f5a":77705491,"f5b":77705606},{"c":"chr12","a":118492842,"a1":118492842,"b":118493175,"b1":118493175,"isgene":true,"name":"chr12:118492957-118493060","strand":"+","f3a":118493060,"f3b":118493175,"f5a":118492842,"f5b":118492957},{"c":"chr13","a":57786332,"a1":57786332,"b":57786682,"b1":57786682,"isgene":true,"name":"chr13:57786447-57786567","strand":"+","f3a":57786567,"f3b":57786682,"f5a":57786332,"f5b":57786447},{"c":"chr15","a":74388780,"a1":74388780,"b":74389086,"b1":74389086,"isgene":true,"name":"chr15:74388895-74388971","strand":"+","f3a":74388971,"f3b":74389086,"f5a":74388780,"f5b":74388895},{"c":"chr17","a":6988604,"a1":6988604,"b":6988909,"b1":6988909,"isgene":true,"name":"chr17:6988719-6988794","strand":"+","f3a":6988794,"f3b":6988909,"f5a":6988604,"f5b":6988719},{"c":"chr17","a":66029501,"a1":66029501,"b":66029846,"b1":66029846,"isgene":true,"name":"chr17:66029616-66029731","strand":"+","f3a":66029731,"f3b":66029846,"f5a":66029501,"f5b":66029616},{"c":"chr3","a":78889817,"a1":78889817,"b":78890203,"b1":78890203,"isgene":true,"name":"chr3:78889932-78890088","strand":"+","f3a":78890088,"f3b":78890203,"f5a":78889817,"f5b":78889932},{"c":"chr7","a":56814991,"a1":56814991,"b":56815290,"b1":56815290,"isgene":true,"name":"chr7:56815106-56815175","strand":"+","f3a":56815175,"f3b":56815290,"f5a":56814991,"f5b":56815106},{"c":"chr8","a":126874077,"a1":126874077,"b":126874471,"b1":126874471,"isgene":true,"name":"chr8:126874192-126874356","strand":"+","f3a":126874356,"f3b":126874471,"f5a":126874077,"f5b":126874192},{"c":"chr9","a":40772336,"a1":40772336,"b":40772697,"b1":40772697,"isgene":true,"name":"chr9:40772451-40772582","strand":"+","f3a":40772582,"f3b":40772697,"f5a":40772336,"f5b":40772451},{"c":"chr9","a":120270783,"a1":120270783,"b":120271099,"b1":120271099,"isgene":true,"name":"chr9:120270898-120270984","strand":"+","f3a":120270984,"f3b":120271099,"f5a":120270783,"f5b":120270898}],"viewrange":["chr11:77705606-77705743",77705494,"chr9:120270898-120270984",120271099]},{"type":"geneset_ripe","list":[{"name":"val_coord","lst":[{"c":"chr11","a":77705606,"b":77705743,"strand":"+","name":"chr11:77705606-77705743","isgene":false,"a1":77705491,"b1":77705858,"f3b":77705858,"f3a":77705743,"f5b":77705606,"f5a":77705491},{"c":"chr12","a":118492957,"b":118493060,"strand":"+","name":"chr12:118492957-118493060","isgene":false,"a1":118492842,"b1":118493175,"f3b":118493175,"f3a":118493060,"f5b":118492957,"f5a":118492842},{"c":"chr13","a":57786447,"b":57786567,"strand":"+","name":"chr13:57786447-57786567","isgene":false,"a1":57786332,"b1":57786682,"f3b":57786682,"f3a":57786567,"f5b":57786447,"f5a":57786332},{"c":"chr15","a":74388895,"b":74388971,"strand":"+","name":"chr15:74388895-74388971","isgene":false,"a1":74388780,"b1":74389086,"f3b":74389086,"f3a":74388971,"f5b":74388895,"f5a":74388780},{"c":"chr17","a":6988719,"b":6988794,"strand":"+","name":"chr17:6988719-6988794","isgene":false,"a1":6988604,"b1":6988909,"f3b":6988909,"f3a":6988794,"f5b":6988719,"f5a":6988604},{"c":"chr17","a":66029616,"b":66029731,"strand":"+","name":"chr17:66029616-66029731","isgene":false,"a1":66029501,"b1":66029846,"f3b":66029846,"f3a":66029731,"f5b":66029616,"f5a":66029501},{"c":"chr3","a":78889932,"b":78890088,"strand":"+","name":"chr3:78889932-78890088","isgene":false,"a1":78889817,"b1":78890203,"f3b":78890203,"f3a":78890088,"f5b":78889932,"f5a":78889817},{"c":"chr7","a":56815106,"b":56815175,"strand":"+","name":"chr7:56815106-56815175","isgene":false,"a1":56814991,"b1":56815290,"f3b":56815290,"f3a":56815175,"f5b":56815106,"f5a":56814991},{"c":"chr8","a":126874192,"b":126874356,"strand":"+","name":"chr8:126874192-126874356","isgene":false,"a1":126874077,"b1":126874471,"f3b":126874471,"f3a":126874356,"f5b":126874192,"f5a":126874077},{"c":"chr9","a":40772451,"b":40772582,"strand":"+","name":"chr9:40772451-40772582","isgene":false,"a1":40772336,"b1":40772697,"f3b":40772697,"f3a":40772582,"f5b":40772451,"f5a":40772336},{"c":"chr9","a":120270898,"b":120270984,"strand":"+","name":"chr9:120270898-120270984","isgene":false,"a1":120270783,"b1":120271099,"f3b":120271099,"f3a":120270984,"f5b":120270898,"f5a":120270783}],"gss_down":115,"gss_opt":"custom","gss_origin":"txstart","gss_up":115}]}]