[{"type":"bedgraph","name":"A2780-mock_Signal.UniqueMultiple.str2","url":"http://wangftp.wustl.edu/~epehrsson/Kate/A2780-mock_Signal.UniqueMultiple.str2.out.bg.gz","mode":1,"qtc":{"anglescale":1,"pr":0,"pg":0,"pb":230,"nr":255,"ng":0,"nb":0,"pth":"#000099","nth":"#800000","thtype":1,"thmin":0,"thmax":2,"thpercentile":90,"height":30,"summeth":1},"metadata":{"md1":["A2780-mock","Forward","Multiply mapped","Mock"]}},{"type":"bedgraph","name":"A2780-mock_Signal.UniqueMultiple.str1","url":"http://wangftp.wustl.edu/~epehrsson/Kate/A2780-mock_Signal.UniqueMultiple.str1.out.bg.gz","mode":1,"qtc":{"anglescale":1,"pr":0,"pg":0,"pb":230,"nr":255,"ng":0,"nb":0,"pth":"#000099","nth":"#800000","thtype":1,"thmin":-2,"thmax":0,"thpercentile":90,"height":30,"summeth":1},"metadata":{"md1":["A2780-mock","Reverse","Multiply mapped","Mock"]}},{"type":"bedgraph","name":"TW988_K1-mock_Signal.UniqueMultiple.str2","url":"http://wangftp.wustl.edu/~epehrsson/Kate/TW988_K1-mock_Signal.UniqueMultiple.str2.out.bg.gz","mode":1,"qtc":{"anglescale":1,"pr":0,"pg":0,"pb":230,"nr":255,"ng":0,"nb":0,"pth":"#000099","nth":"#800000","thtype":1,"thmin":0,"thmax":2,"thpercentile":90,"height":30,"summeth":1},"metadata":{"md1":["TW988_K1-mock","Forward","Multiply mapped","Mock"]}},{"type":"bedgraph","name":"TW988_K1-mock_Signal.UniqueMultiple.str1","url":"http://wangftp.wustl.edu/~epehrsson/Kate/TW988_K1-mock_Signal.UniqueMultiple.str1.out.bg.gz","mode":1,"qtc":{"anglescale":1,"pr":0,"pg":0,"pb":230,"nr":255,"ng":0,"nb":0,"pth":"#000099","nth":"#800000","thtype":1,"thmin":-2,"thmax":0,"thpercentile":90,"height":30,"summeth":1},"metadata":{"md1":["TW988_K1-mock","Reverse","Multiply mapped","Mock"]}},{"type":"bedgraph","name":"TW989_K2-ITF_Signal.UniqueMultiple.str2","url":"http://wangftp.wustl.edu/~epehrsson/Kate/TW989_K2-ITF_Signal.UniqueMultiple.str2.out.bg.gz","mode":1,"qtc":{"anglescale":1,"pr":0,"pg":0,"pb":230,"nr":255,"ng":0,"nb":0,"pth":"#000099","nth":"#800000","thtype":1,"thmin":0,"thmax":2,"thpercentile":90,"height":30,"summeth":1},"metadata":{"md1":["TW989_K2-ITF","Forward","Multiply mapped","ITF"]}},{"type":"bedgraph","name":"TW989_K2-ITF_Signal.UniqueMultiple.str1","url":"http://wangftp.wustl.edu/~epehrsson/Kate/TW989_K2-ITF_Signal.UniqueMultiple.str1.out.bg.gz","mode":1,"qtc":{"anglescale":1,"pr":0,"pg":0,"pb":230,"nr":255,"ng":0,"nb":0,"pth":"#000099","nth":"#800000","thtype":1,"thmin":-2,"thmax":0,"thpercentile":90,"height":30,"summeth":1},"metadata":{"md1":["TW989_K2-ITF","Reverse","Multiply mapped","ITF"]}},{"type":"bedgraph","name":"TW990_K3-Aza_Signal.UniqueMultiple.str2","url":"http://wangftp.wustl.edu/~epehrsson/Kate/TW990_K3-Aza_Signal.UniqueMultiple.str2.out.bg.gz","mode":1,"qtc":{"anglescale":1,"pr":0,"pg":0,"pb":230,"nr":255,"ng":0,"nb":0,"pth":"#000099","nth":"#800000","thtype":1,"thmin":0,"thmax":2,"thpercentile":90,"height":30,"summeth":1},"metadata":{"md1":["TW990_K3-Aza","Forward","Multiply mapped","Aza"]}},{"type":"bedgraph","name":"TW990_K3-Aza_Signal.UniqueMultiple.str1","url":"http://wangftp.wustl.edu/~epehrsson/Kate/TW990_K3-Aza_Signal.UniqueMultiple.str1.out.bg.gz","mode":1,"qtc":{"anglescale":1,"pr":0,"pg":0,"pb":230,"nr":255,"ng":0,"nb":0,"pth":"#000099","nth":"#800000","thtype":1,"thmin":-2,"thmax":0,"thpercentile":90,"height":30,"summeth":1},"metadata":{"md1":["TW990_K3-Aza","Reverse","Multiply mapped","Aza"]}},{"type":"bedgraph","name":"TW991_K4-AzaITF_Signal.UniqueMultiple.str2","url":"http://wangftp.wustl.edu/~epehrsson/Kate/TW991_K4-AzaITF_Signal.UniqueMultiple.str2.out.bg.gz","mode":1,"qtc":{"anglescale":1,"pr":0,"pg":0,"pb":230,"nr":255,"ng":0,"nb":0,"pth":"#000099","nth":"#800000","thtype":1,"thmin":0,"thmax":2,"thpercentile":90,"height":30,"summeth":1},"metadata":{"md1":["TW991_K4-AzaITF","Forward","Multiply mapped","AzaITF"]}},{"type":"bedgraph","name":"TW991_K4-AzaITF_Signal.UniqueMultiple.str1","url":"http://wangftp.wustl.edu/~epehrsson/Kate/TW991_K4-AzaITF_Signal.UniqueMultiple.str1.out.bg.gz","mode":1,"qtc":{"anglescale":1,"pr":0,"pg":0,"pb":230,"nr":255,"ng":0,"nb":0,"pth":"#000099","nth":"#800000","thtype":1,"thmin":-2,"thmax":0,"thpercentile":90,"height":30,"summeth":1},"metadata":{"md1":["TW991_K4-AzaITF","Reverse","Multiply mapped","AzaITF"]}},{"type":"native_track","list":[{"name":"refGene","mode":3,"qtc":{"anglescale":1,"pr":255,"pg":0,"pb":0,"nr":0,"ng":0,"nb":230,"pth":"#800000","nth":"#000099","thtype":0,"thmin":0,"thmax":10,"thpercentile":95,"height":50,"summeth":1,"textcolor":"#000000","fontsize":"8pt","fontfamily":"sans-serif","fontbold":false,"bedcolor":"#002EB8"},"metadata":{},"details":{"source":"UCSC Genome Browser","download date":"March 7, 2014"}},{"name":"rmsk_all","mode":7,"qtc":{"anglescale":1,"pr":255,"pg":0,"pb":0,"nr":0,"ng":0,"nb":230,"pth":"#800000","nth":"#000099","thtype":0,"thmin":0,"thmax":10,"thpercentile":95,"height":35,"summeth":1,"textcolor":"#000000","fontsize":"8pt","fontfamily":"sans-serif","fontbold":false,"bedcolor":"#336666"},"showscoreidx":2,"scorenamelst":["Smith-Waterman score","SW score normalized by length","1-divergence%"],"scorescalelst":[{"type":0},{"type":0},{"type":0}],"metadata":{},"categories":{"1":["SINE - short interspersed nuclear elements","#cc0000"],"2":["LINE - long interspersed nuclear element","#FF6600"],"3":["LTR - long terminal repeat element","#006600"],"4":["DNA transposon","#4A72E8"],"5":["Simple repeat, micro-satellite","#AB833B"],"6":["Satellite repeat","#660000"],"7":["Low complexity repeat","#663333"],"8":["RNA repeat","#cc33ff"],"9":["Other repeats","#488E8E"],"10":["Unknown","#5C5C5C"],"11":["Retroposon","#EA53C4"],"-1":["no information","transparent"]}}]},{"type":"bedgraph","name":"A2780-mock_Signal.Unique.str1","url":"http://wangftp.wustl.edu/~epehrsson/Kate/A2780-mock_Signal.Unique.str1.out.bg.gz","mode":"hide","qtc":{"height":15,"thtype":0},"metadata":{"md1":["A2780-mock","Reverse","Unique only","Mock"]}},{"type":"bedgraph","name":"A2780-mock_Signal.Unique.str2","url":"http://wangftp.wustl.edu/~epehrsson/Kate/A2780-mock_Signal.Unique.str2.out.bg.gz","mode":"hide","qtc":{"height":15,"thtype":0},"metadata":{"md1":["A2780-mock","Forward","Unique only","Mock"]}},{"type":"bedgraph","name":"TW988_K1-mock_Signal.Unique.str1","url":"http://wangftp.wustl.edu/~epehrsson/Kate/TW988_K1-mock_Signal.Unique.str1.out.bg.gz","mode":"hide","qtc":{"height":15,"thtype":0},"metadata":{"md1":["TW988_K1-mock","Reverse","Unique only","Mock"]}},{"type":"bedgraph","name":"TW988_K1-mock_Signal.Unique.str2","url":"http://wangftp.wustl.edu/~epehrsson/Kate/TW988_K1-mock_Signal.Unique.str2.out.bg.gz","mode":"hide","qtc":{"height":15,"thtype":0},"metadata":{"md1":["TW988_K1-mock","Forward","Unique only","Mock"]}},{"type":"bedgraph","name":"TW989_K2-ITF_Signal.Unique.str1","url":"http://wangftp.wustl.edu/~epehrsson/Kate/TW989_K2-ITF_Signal.Unique.str1.out.bg.gz","mode":"hide","qtc":{"height":15,"thtype":0},"metadata":{"md1":["TW989_K2-ITF","Reverse","Unique only","ITF"]}},{"type":"bedgraph","name":"TW989_K2-ITF_Signal.Unique.str2","url":"http://wangftp.wustl.edu/~epehrsson/Kate/TW989_K2-ITF_Signal.Unique.str2.out.bg.gz","mode":"hide","qtc":{"height":15,"thtype":0},"metadata":{"md1":["TW989_K2-ITF","Forward","Unique only","ITF"]}},{"type":"bedgraph","name":"TW990_K3-Aza_Signal.Unique.str1","url":"http://wangftp.wustl.edu/~epehrsson/Kate/TW990_K3-Aza_Signal.Unique.str1.out.bg.gz","mode":"hide","qtc":{"height":15,"thtype":0},"metadata":{"md1":["TW990_K3-Aza","Reverse","Unique only","Aza"]}},{"type":"bedgraph","name":"TW990_K3-Aza_Signal.Unique.str2","url":"http://wangftp.wustl.edu/~epehrsson/Kate/TW990_K3-Aza_Signal.Unique.str2.out.bg.gz","mode":"hide","qtc":{"height":15,"thtype":0},"metadata":{"md1":["TW990_K3-Aza","Forward","Unique only","Aza"]}},{"type":"bedgraph","name":"TW991_K4-AzaITF_Signal.Unique.str1","url":"http://wangftp.wustl.edu/~epehrsson/Kate/TW991_K4-AzaITF_Signal.Unique.str1.out.bg.gz","mode":"hide","qtc":{"height":15,"thtype":0},"metadata":{"md1":["TW991_K4-AzaITF","Reverse","Unique only","AzaITF"]}},{"type":"bedgraph","name":"TW991_K4-AzaITF_Signal.Unique.str2","url":"http://wangftp.wustl.edu/~epehrsson/Kate/TW991_K4-AzaITF_Signal.Unique.str2.out.bg.gz","mode":"hide","qtc":{"height":15,"thtype":0},"metadata":{"md1":["TW991_K4-AzaITF","Forward","Unique only","AzaITF"]}},{"type":"metadata","vocabulary_set":{"md1":{"vocabulary":{"Sample":["TW988_K1-mock","TW989_K2-ITF","TW990_K3-Aza","TW991_K4-AzaITF","A2780-mock"],"Strand":["Forward","Reverse"],"Mapping":["Unique only","Multiply mapped"],"Treatment":["Mock","ITF","Aza","AzaITF"]},"source":"http://wangftp.wustl.edu/~epehrsson/Kate/Kate_datahub.json"}},"show_terms":{"md1":["Sample","Strand","Mapping","Treatment"]}},{"type":"coordinate_override","coord":"chr6,84226711,chr6,84237167"},{"type":"geneset_ripe","list":[{"name":"dsRNA RPM1 TE","lst":[{"c":"chr1","a":9171287,"b":9171676,"strand":"+","name":"chr1:9171287-9171676","isgene":false,"a1":9168787,"b1":9171676,"f3b":9171676,"f3a":9171676,"f5b":9171287,"f5a":9168787},{"c":"chr2","a":47794271,"b":47794571,"strand":"+","name":"chr2:47794271-47794571","isgene":false,"a1":47791771,"b1":47794571,"f3b":47794571,"f3a":47794571,"f5b":47794271,"f5a":47791771},{"c":"chr2","a":206071319,"b":206071420,"strand":"+","name":"chr2:206071319-206071420","isgene":false,"a1":206068819,"b1":206071420,"f3b":206071420,"f3a":206071420,"f5b":206071319,"f5a":206068819},{"c":"chr2","a":216062052,"b":216062344,"strand":"+","name":"chr2:216062052-216062344","isgene":false,"a1":216059552,"b1":216062344,"f3b":216062344,"f3a":216062344,"f5b":216062052,"f5a":216059552},{"c":"chr3","a":15738158,"b":15739435,"strand":"+","name":"chr3:15738158-15739435","isgene":false,"a1":15735658,"b1":15739435,"f3b":15739435,"f3a":15739435,"f5b":15738158,"f5a":15735658},{"c":"chr3","a":15891288,"b":15891499,"strand":"+","name":"chr3:15891288-15891499","isgene":false,"a1":15888788,"b1":15891499,"f3b":15891499,"f3a":15891499,"f5b":15891288,"f5a":15888788},{"c":"chr4","a":1706937,"b":1707255,"strand":"+","name":"chr4:1706937-1707255","isgene":false,"a1":1704437,"b1":1707255,"f3b":1707255,"f3a":1707255,"f5b":1706937,"f5a":1704437},{"c":"chr4","a":1707255,"b":1707512,"strand":"+","name":"chr4:1707255-1707512","isgene":false,"a1":1704755,"b1":1707512,"f3b":1707512,"f3a":1707512,"f5b":1707255,"f5a":1704755},{"c":"chr4","a":8120233,"b":8120679,"strand":"+","name":"chr4:8120233-8120679","isgene":false,"a1":8117733,"b1":8120679,"f3b":8120679,"f3a":8120679,"f5b":8120233,"f5a":8117733},{"c":"chr5","a":58953092,"b":58959547,"strand":"+","name":"chr5:58953092-58959547","isgene":false,"a1":58950592,"b1":58959547,"f3b":58959547,"f3a":58959547,"f5b":58953092,"f5a":58950592},{"c":"chr5","a":132351614,"b":132351891,"strand":"+","name":"chr5:132351614-132351891","isgene":false,"a1":132349114,"b1":132351891,"f3b":132351891,"f3a":132351891,"f5b":132351614,"f5a":132349114},{"c":"chr5","a":171399720,"b":171400153,"strand":"+","name":"chr5:171399720-171400153","isgene":false,"a1":171397220,"b1":171400153,"f3b":171400153,"f3a":171400153,"f5b":171399720,"f5a":171397220},{"c":"chr5","a":180798223,"b":180798580,"strand":"+","name":"chr5:180798223-180798580","isgene":false,"a1":180795723,"b1":180798580,"f3b":180798580,"f3a":180798580,"f5b":180798223,"f5a":180795723},{"c":"chr6","a":84233133,"b":84233249,"strand":"+","name":"chr6:84233133-84233249","isgene":false,"a1":84230633,"b1":84233249,"f3b":84233249,"f3a":84233249,"f5b":84233133,"f5a":84230633},{"c":"chr7","a":74680460,"b":74680745,"strand":"+","name":"chr7:74680460-74680745","isgene":false,"a1":74677960,"b1":74680745,"f3b":74680745,"f3a":74680745,"f5b":74680460,"f5a":74677960},{"c":"chr7","a":101074783,"b":101075227,"strand":"+","name":"chr7:101074783-101075227","isgene":false,"a1":101072283,"b1":101075227,"f3b":101075227,"f3a":101075227,"f5b":101074783,"f5a":101072283},{"c":"chr8","a":74849937,"b":74850052,"strand":"+","name":"chr8:74849937-74850052","isgene":false,"a1":74847437,"b1":74850052,"f3b":74850052,"f3a":74850052,"f5b":74849937,"f5a":74847437},{"c":"chr8","a":82183188,"b":82184490,"strand":"+","name":"chr8:82183188-82184490","isgene":false,"a1":82180688,"b1":82184490,"f3b":82184490,"f3a":82184490,"f5b":82183188,"f5a":82180688},{"c":"chr9","a":9710801,"b":9711378,"strand":"+","name":"chr9:9710801-9711378","isgene":false,"a1":9708301,"b1":9711378,"f3b":9711378,"f3a":9711378,"f5b":9710801,"f5a":9708301},{"c":"chr10","a":4968414,"b":4968590,"strand":"+","name":"chr10:4968414-4968590","isgene":false,"a1":4965914,"b1":4968590,"f3b":4968590,"f3a":4968590,"f5b":4968414,"f5a":4965914},{"c":"chr10","a":4973108,"b":4973216,"strand":"+","name":"chr10:4973108-4973216","isgene":false,"a1":4970608,"b1":4973216,"f3b":4973216,"f3a":4973216,"f5b":4973108,"f5a":4970608},{"c":"chr10","a":4974311,"b":4975049,"strand":"+","name":"chr10:4974311-4975049","isgene":false,"a1":4971811,"b1":4975049,"f3b":4975049,"f3a":4975049,"f5b":4974311,"f5a":4971811},{"c":"chr10","a":4975574,"b":4975778,"strand":"+","name":"chr10:4975574-4975778","isgene":false,"a1":4973074,"b1":4975778,"f3b":4975778,"f3a":4975778,"f5b":4975574,"f5a":4973074},{"c":"chr10","a":4991985,"b":4992189,"strand":"+","name":"chr10:4991985-4992189","isgene":false,"a1":4989485,"b1":4992189,"f3b":4992189,"f3a":4992189,"f5b":4991985,"f5a":4989485},{"c":"chr10","a":4993000,"b":4993755,"strand":"+","name":"chr10:4993000-4993755","isgene":false,"a1":4990500,"b1":4993755,"f3b":4993755,"f3a":4993755,"f5b":4993000,"f5a":4990500},{"c":"chr11","a":61391206,"b":61391252,"strand":"+","name":"chr11:61391206-61391252","isgene":false,"a1":61388706,"b1":61391252,"f3b":61391252,"f3a":61391252,"f5b":61391206,"f5a":61388706},{"c":"chr11","a":61391282,"b":61391540,"strand":"+","name":"chr11:61391282-61391540","isgene":false,"a1":61388782,"b1":61391540,"f3b":61391540,"f3a":61391540,"f5b":61391282,"f5a":61388782},{"c":"chr12","a":47373307,"b":47373646,"strand":"+","name":"chr12:47373307-47373646","isgene":false,"a1":47370807,"b1":47373646,"f3b":47373646,"f3a":47373646,"f5b":47373307,"f5a":47370807},{"c":"chr12","a":47373646,"b":47376869,"strand":"+","name":"chr12:47373646-47376869","isgene":false,"a1":47371146,"b1":47376869,"f3b":47376869,"f3a":47376869,"f5b":47373646,"f5a":47371146},{"c":"chr12","a":88461090,"b":88465032,"strand":"+","name":"chr12:88461090-88465032","isgene":false,"a1":88458590,"b1":88465032,"f3b":88465032,"f3a":88465032,"f5b":88461090,"f5a":88458590},{"c":"chr12","a":93854046,"b":93854536,"strand":"+","name":"chr12:93854046-93854536","isgene":false,"a1":93851546,"b1":93854536,"f3b":93854536,"f3a":93854536,"f5b":93854046,"f5a":93851546},{"c":"chr12","a":95563391,"b":95563690,"strand":"+","name":"chr12:95563391-95563690","isgene":false,"a1":95560891,"b1":95563690,"f3b":95563690,"f3a":95563690,"f5b":95563391,"f5a":95560891},{"c":"chr12","a":95571155,"b":95571496,"strand":"+","name":"chr12:95571155-95571496","isgene":false,"a1":95568655,"b1":95571496,"f3b":95571496,"f3a":95571496,"f5b":95571155,"f5a":95568655},{"c":"chr12","a":120898029,"b":120898335,"strand":"+","name":"chr12:120898029-120898335","isgene":false,"a1":120895529,"b1":120898335,"f3b":120898335,"f3a":120898335,"f5b":120898029,"f5a":120895529},{"c":"chr12","a":121778170,"b":121778471,"strand":"+","name":"chr12:121778170-121778471","isgene":false,"a1":121775670,"b1":121778471,"f3b":121778471,"f3a":121778471,"f5b":121778170,"f5a":121775670},{"c":"chr14","a":52868704,"b":52868781,"strand":"+","name":"chr14:52868704-52868781","isgene":false,"a1":52866204,"b1":52868781,"f3b":52868781,"f3a":52868781,"f5b":52868704,"f5a":52866204},{"c":"chr16","a":3711318,"b":3711623,"strand":"+","name":"chr16:3711318-3711623","isgene":false,"a1":3708818,"b1":3711623,"f3b":3711623,"f3a":3711623,"f5b":3711318,"f5a":3708818},{"c":"chr16","a":69374356,"b":69374684,"strand":"+","name":"chr16:69374356-69374684","isgene":false,"a1":69371856,"b1":69374684,"f3b":69374684,"f3a":69374684,"f5b":69374356,"f5a":69371856},{"c":"chr17","a":48062178,"b":48062452,"strand":"+","name":"chr17:48062178-48062452","isgene":false,"a1":48059678,"b1":48062452,"f3b":48062452,"f3a":48062452,"f5b":48062178,"f5a":48059678},{"c":"chr17","a":50857525,"b":50857854,"strand":"+","name":"chr17:50857525-50857854","isgene":false,"a1":50855025,"b1":50857854,"f3b":50857854,"f3a":50857854,"f5b":50857525,"f5a":50855025},{"c":"chr17","a":50883314,"b":50883379,"strand":"+","name":"chr17:50883314-50883379","isgene":false,"a1":50880814,"b1":50883379,"f3b":50883379,"f3a":50883379,"f5b":50883314,"f5a":50880814},{"c":"chr18","a":75458935,"b":75459283,"strand":"+","name":"chr18:75458935-75459283","isgene":false,"a1":75456435,"b1":75459283,"f3b":75459283,"f3a":75459283,"f5b":75458935,"f5a":75456435},{"c":"chr19","a":53875567,"b":53875864,"strand":"+","name":"chr19:53875567-53875864","isgene":false,"a1":53873067,"b1":53875864,"f3b":53875864,"f3a":53875864,"f5b":53875567,"f5a":53873067},{"c":"chr21","a":8205785,"b":8206586,"strand":"+","name":"chr21:8205785-8206586","isgene":false,"a1":8203285,"b1":8206586,"f3b":8206586,"f3a":8206586,"f5b":8205785,"f5a":8203285},{"c":"chr21","a":8395088,"b":8395197,"strand":"+","name":"chr21:8395088-8395197","isgene":false,"a1":8392588,"b1":8395197,"f3b":8395197,"f3a":8395197,"f5b":8395088,"f5a":8392588},{"c":"chr21","a":8439303,"b":8439412,"strand":"+","name":"chr21:8439303-8439412","isgene":false,"a1":8436803,"b1":8439412,"f3b":8439412,"f3a":8439412,"f5b":8439303,"f5a":8436803},{"c":"chr22","a":46727282,"b":46727594,"strand":"+","name":"chr22:46727282-46727594","isgene":false,"a1":46724782,"b1":46727594,"f3b":46727594,"f3a":46727594,"f5b":46727282,"f5a":46724782},{"c":"chrX","a":100028455,"b":100028779,"strand":"+","name":"chrX:100028455-100028779","isgene":false,"a1":100025955,"b1":100028779,"f3b":100028779,"f3a":100028779,"f5b":100028455,"f5a":100025955}],"gss_down":0,"gss_opt":"custom","gss_origin":"genebody","gss_up":2500}]}]