[{"type":"bigwig","name":"A549-L021-B1-T1-P002.pe.q10.sort.rmdup.RIPnorm","url":"https://s3.amazonaws.com/changseq/RyanCorces/TCGA-ATAC/CellLines/A549-L021-B1-T1-P002.pe.q10.sort.rmdup.RIPnorm.bw","mode":1,"qtc":{"anglescale":1,"pr":255,"pg":0,"pb":0,"nr":255,"ng":0,"nb":0,"pth":"rgb(0,0,0)","nth":"#800000","thtype":0,"thmin":0,"thmax":10,"thpercentile":90,"height":50,"summeth":1},"metadata":{}},{"type":"bigwig","name":"A549-L022-B1-T2-P002.pe.q10.sort.rmdup.RIPnorm","url":"https://s3.amazonaws.com/changseq/RyanCorces/TCGA-ATAC/CellLines/A549-L022-B1-T2-P002.pe.q10.sort.rmdup.RIPnorm.bw","mode":1,"qtc":{"anglescale":1,"pr":255,"pg":0,"pb":0,"nr":255,"ng":0,"nb":0,"pth":"rgb(0,0,0)","nth":"#800000","thtype":0,"thmin":0,"thmax":10,"thpercentile":90,"height":50,"summeth":1},"metadata":{}},{"type":"bigwig","name":"A549-L023-B1-T3-P003.pe.q10.sort.rmdup.RIPnorm","url":"https://s3.amazonaws.com/changseq/RyanCorces/TCGA-ATAC/CellLines/A549-L023-B1-T3-P003.pe.q10.sort.rmdup.RIPnorm.bw","mode":1,"qtc":{"anglescale":1,"pr":255,"pg":0,"pb":0,"nr":255,"ng":0,"nb":0,"pth":"rgb(0,0,0)","nth":"#800000","thtype":0,"thmin":0,"thmax":10,"thpercentile":90,"height":50,"summeth":1},"metadata":{}},{"type":"bigwig","name":"EKV-L018-B1-T1-P002.pe.q10.sort.rmdup.RIPnorm","url":"https://s3.amazonaws.com/changseq/RyanCorces/TCGA-ATAC/CellLines/EKV-L018-B1-T1-P002.pe.q10.sort.rmdup.RIPnorm.bw","mode":1,"qtc":{"anglescale":1,"pr":5,"pg":0,"pb":255,"nr":255,"ng":0,"nb":0,"pth":"rgb(0,0,0)","nth":"#800000","thtype":0,"thmin":0,"thmax":10,"thpercentile":90,"height":50,"summeth":1},"metadata":{}},{"type":"bigwig","name":"EKV-L019-B1-T2-P003.pe.q10.sort.rmdup.RIPnorm","url":"https://s3.amazonaws.com/changseq/RyanCorces/TCGA-ATAC/CellLines/EKV-L019-B1-T2-P003.pe.q10.sort.rmdup.RIPnorm.bw","mode":1,"qtc":{"anglescale":1,"pr":5,"pg":0,"pb":255,"nr":255,"ng":0,"nb":0,"pth":"rgb(0,0,0)","nth":"#800000","thtype":0,"thmin":0,"thmax":10,"thpercentile":90,"height":50,"summeth":1},"metadata":{}},{"type":"bigwig","name":"EKV-L020-B1-T3-P003.pe.q10.sort.rmdup.RIPnorm","url":"https://s3.amazonaws.com/changseq/RyanCorces/TCGA-ATAC/CellLines/EKV-L020-B1-T3-P003.pe.q10.sort.rmdup.RIPnorm.bw","mode":1,"qtc":{"anglescale":1,"pr":5,"pg":0,"pb":255,"nr":255,"ng":0,"nb":0,"pth":"rgb(0,0,0)","nth":"#800000","thtype":0,"thmin":0,"thmax":10,"thpercentile":90,"height":50,"summeth":1},"metadata":{}},{"type":"bigwig","name":"HCT116-L003-B1-T1-P001.pe.q10.sort.rmdup.RIPnorm","url":"https://s3.amazonaws.com/changseq/RyanCorces/TCGA-ATAC/CellLines/HCT116-L003-B1-T1-P001.pe.q10.sort.rmdup.RIPnorm.bw","mode":1,"qtc":{"anglescale":1,"pr":0,"pg":201,"pb":10,"nr":255,"ng":0,"nb":0,"pth":"rgb(0,0,0)","nth":"#800000","thtype":0,"thmin":0,"thmax":10,"thpercentile":90,"height":50,"summeth":1},"metadata":{}},{"type":"bigwig","name":"HCT116-L004-B1-T2-P001.pe.q10.sort.rmdup.RIPnorm","url":"https://s3.amazonaws.com/changseq/RyanCorces/TCGA-ATAC/CellLines/HCT116-L004-B1-T2-P001.pe.q10.sort.rmdup.RIPnorm.bw","mode":1,"qtc":{"anglescale":1,"pr":0,"pg":201,"pb":10,"nr":255,"ng":0,"nb":0,"pth":"rgb(0,0,0)","nth":"#800000","thtype":0,"thmin":0,"thmax":10,"thpercentile":90,"height":50,"summeth":1},"metadata":{}},{"type":"bigwig","name":"HCT116-L032-B1-T3-P003.pe.q10.sort.rmdup.RIPnorm","url":"https://s3.amazonaws.com/changseq/RyanCorces/TCGA-ATAC/CellLines/HCT116-L032-B1-T3-P003.pe.q10.sort.rmdup.RIPnorm.bw","mode":1,"qtc":{"anglescale":1,"pr":0,"pg":201,"pb":10,"nr":255,"ng":0,"nb":0,"pth":"rgb(0,0,0)","nth":"#800000","thtype":0,"thmin":0,"thmax":10,"thpercentile":90,"height":50,"summeth":1},"metadata":{}},{"type":"bigwig","name":"Hop92-L003-B1-T1-P003.pe.q10.sort.rmdup.RIPnorm","url":"https://s3.amazonaws.com/changseq/RyanCorces/TCGA-ATAC/CellLines/Hop92-L003-B1-T1-P003.pe.q10.sort.rmdup.RIPnorm.bw","mode":1,"qtc":{"anglescale":1,"pr":255,"pg":175,"pb":0,"nr":255,"ng":0,"nb":0,"pth":"rgb(0,0,0)","nth":"#800000","thtype":0,"thmin":0,"thmax":10,"thpercentile":90,"height":50,"summeth":1},"metadata":{}},{"type":"bigwig","name":"Hop92-L004-B1-T2-P001.pe.q10.sort.rmdup.RIPnorm","url":"https://s3.amazonaws.com/changseq/RyanCorces/TCGA-ATAC/CellLines/Hop92-L004-B1-T2-P001.pe.q10.sort.rmdup.RIPnorm.bw","mode":1,"qtc":{"anglescale":1,"pr":255,"pg":175,"pb":0,"nr":255,"ng":0,"nb":0,"pth":"rgb(0,0,0)","nth":"#800000","thtype":0,"thmin":0,"thmax":10,"thpercentile":90,"height":50,"summeth":1},"metadata":{}},{"type":"bigwig","name":"Hop92-L005-B1-T3-P003.pe.q10.sort.rmdup.RIPnorm","url":"https://s3.amazonaws.com/changseq/RyanCorces/TCGA-ATAC/CellLines/Hop92-L005-B1-T3-P003.pe.q10.sort.rmdup.RIPnorm.bw","mode":1,"qtc":{"anglescale":1,"pr":255,"pg":175,"pb":0,"nr":255,"ng":0,"nb":0,"pth":"rgb(0,0,0)","nth":"#800000","thtype":0,"thmin":0,"thmax":10,"thpercentile":90,"height":50,"summeth":1},"metadata":{}},{"type":"bigwig","name":"HT29-L024-B1-T1-P003.pe.q10.sort.rmdup.RIPnorm","url":"https://s3.amazonaws.com/changseq/RyanCorces/TCGA-ATAC/CellLines/HT29-L024-B1-T1-P003.pe.q10.sort.rmdup.RIPnorm.bw","mode":1,"qtc":{"anglescale":1,"pr":0,"pg":0,"pb":0,"nr":255,"ng":0,"nb":0,"pth":"rgb(0,0,0)","nth":"#800000","thtype":0,"thmin":0,"thmax":10,"thpercentile":90,"height":50,"summeth":1},"metadata":{}},{"type":"bigwig","name":"MCF7_ATAC_Rep1.pe.q10.sort.rmdup.RIPnorm","url":"https://s3.amazonaws.com/changseq/RyanCorces/TCGA-ATAC/CellLines/MCF7_ATAC_Rep1.pe.q10.sort.rmdup.RIPnorm.bw","mode":1,"qtc":{"anglescale":1,"pr":0,"pg":0,"pb":0,"nr":255,"ng":0,"nb":0,"pth":"rgb(0,0,0)","nth":"#800000","thtype":0,"thmin":0,"thmax":10,"thpercentile":90,"height":50,"summeth":1},"metadata":{}},{"type":"bigwig","name":"MCF7_ATAC_Rep2.pe.q10.sort.rmdup.RIPnorm","url":"https://s3.amazonaws.com/changseq/RyanCorces/TCGA-ATAC/CellLines/MCF7_ATAC_Rep2.pe.q10.sort.rmdup.RIPnorm.bw","mode":1,"qtc":{"anglescale":1,"pr":0,"pg":0,"pb":0,"nr":255,"ng":0,"nb":0,"pth":"rgb(0,0,0)","nth":"#800000","thtype":0,"thmin":0,"thmax":10,"thpercentile":90,"height":50,"summeth":1},"metadata":{}},{"type":"bigwig","name":"MDAMB231_ATAC_Rep1.pe.q10.sort.rmdup.RIPnorm","url":"https://s3.amazonaws.com/changseq/RyanCorces/TCGA-ATAC/CellLines/MDAMB231_ATAC_Rep1.pe.q10.sort.rmdup.RIPnorm.bw","mode":1,"qtc":{"anglescale":1,"pr":0,"pg":0,"pb":0,"nr":255,"ng":0,"nb":0,"pth":"rgb(0,0,0)","nth":"#800000","thtype":0,"thmin":0,"thmax":10,"thpercentile":90,"height":50,"summeth":1},"metadata":{}},{"type":"bigwig","name":"MDAMB231_ATAC_Rep2.pe.q10.sort.rmdup.RIPnorm","url":"https://s3.amazonaws.com/changseq/RyanCorces/TCGA-ATAC/CellLines/MDAMB231_ATAC_Rep2.pe.q10.sort.rmdup.RIPnorm.bw","mode":1,"qtc":{"anglescale":1,"pr":0,"pg":0,"pb":0,"nr":255,"ng":0,"nb":0,"pth":"rgb(0,0,0)","nth":"#800000","thtype":0,"thmin":0,"thmax":10,"thpercentile":90,"height":50,"summeth":1},"metadata":{}},{"type":"bigwig","name":"NCI-H1792-L012-B1-T1-P001.pe.q10.sort.rmdup.RIPnorm","url":"https://s3.amazonaws.com/changseq/RyanCorces/TCGA-ATAC/CellLines/NCI-H1792-L012-B1-T1-P001.pe.q10.sort.rmdup.RIPnorm.bw","mode":1,"qtc":{"anglescale":1,"pr":251,"pg":0,"pb":255,"nr":255,"ng":0,"nb":0,"pth":"rgb(0,0,0)","nth":"#800000","thtype":0,"thmin":0,"thmax":10,"thpercentile":90,"height":50,"summeth":1},"metadata":{}},{"type":"bigwig","name":"NCI-H1792-L013-B1-T2-P003.pe.q10.sort.rmdup.RIPnorm","url":"https://s3.amazonaws.com/changseq/RyanCorces/TCGA-ATAC/CellLines/NCI-H1792-L013-B1-T2-P003.pe.q10.sort.rmdup.RIPnorm.bw","mode":1,"qtc":{"anglescale":1,"pr":251,"pg":0,"pb":255,"nr":255,"ng":0,"nb":0,"pth":"rgb(0,0,0)","nth":"#800000","thtype":0,"thmin":0,"thmax":10,"thpercentile":90,"height":50,"summeth":1},"metadata":{}},{"type":"bigwig","name":"NCI-H1792-L014-B1-T3-P001.pe.q10.sort.rmdup.RIPnorm","url":"https://s3.amazonaws.com/changseq/RyanCorces/TCGA-ATAC/CellLines/NCI-H1792-L014-B1-T3-P001.pe.q10.sort.rmdup.RIPnorm.bw","mode":1,"qtc":{"anglescale":1,"pr":251,"pg":0,"pb":255,"nr":255,"ng":0,"nb":0,"pth":"rgb(0,0,0)","nth":"#800000","thtype":0,"thmin":0,"thmax":10,"thpercentile":90,"height":50,"summeth":1},"metadata":{}},{"type":"bigwig","name":"NCI-H23-L006-B1-T1-P002.pe.q10.sort.rmdup.RIPnorm","url":"https://s3.amazonaws.com/changseq/RyanCorces/TCGA-ATAC/CellLines/NCI-H23-L006-B1-T1-P002.pe.q10.sort.rmdup.RIPnorm.bw","mode":1,"qtc":{"anglescale":1,"pr":0,"pg":219,"pb":216,"nr":255,"ng":0,"nb":0,"pth":"rgb(0,0,0)","nth":"#800000","thtype":0,"thmin":0,"thmax":10,"thpercentile":90,"height":50,"summeth":1},"metadata":{}},{"type":"bigwig","name":"NCI-H23-L007-B1-T2-P002.pe.q10.sort.rmdup.RIPnorm","url":"https://s3.amazonaws.com/changseq/RyanCorces/TCGA-ATAC/CellLines/NCI-H23-L007-B1-T2-P002.pe.q10.sort.rmdup.RIPnorm.bw","mode":1,"qtc":{"anglescale":1,"pr":0,"pg":219,"pb":216,"nr":255,"ng":0,"nb":0,"pth":"rgb(0,0,0)","nth":"#800000","thtype":0,"thmin":0,"thmax":10,"thpercentile":90,"height":50,"summeth":1},"metadata":{}},{"type":"bigwig","name":"NCI-H23-L008-B1-T3-P001.pe.q10.sort.rmdup.RIPnorm","url":"https://s3.amazonaws.com/changseq/RyanCorces/TCGA-ATAC/CellLines/NCI-H23-L008-B1-T3-P001.pe.q10.sort.rmdup.RIPnorm.bw","mode":1,"qtc":{"anglescale":1,"pr":0,"pg":219,"pb":216,"nr":255,"ng":0,"nb":0,"pth":"rgb(0,0,0)","nth":"#800000","thtype":0,"thmin":0,"thmax":10,"thpercentile":90,"height":50,"summeth":1},"metadata":{}},{"type":"bigwig","name":"NCI-H460-L015-B1-T1-P001.pe.q10.sort.rmdup.RIPnorm","url":"https://s3.amazonaws.com/changseq/RyanCorces/TCGA-ATAC/CellLines/NCI-H460-L015-B1-T1-P001.pe.q10.sort.rmdup.RIPnorm.bw","mode":1,"qtc":{"anglescale":1,"pr":218,"pg":222,"pb":0,"nr":255,"ng":0,"nb":0,"pth":"rgb(0,0,0)","nth":"#800000","thtype":0,"thmin":0,"thmax":10,"thpercentile":90,"height":50,"summeth":1},"metadata":{}},{"type":"bigwig","name":"NCI-H460-L016-B1-T2-P001.pe.q10.sort.rmdup.RIPnorm","url":"https://s3.amazonaws.com/changseq/RyanCorces/TCGA-ATAC/CellLines/NCI-H460-L016-B1-T2-P001.pe.q10.sort.rmdup.RIPnorm.bw","mode":1,"qtc":{"anglescale":1,"pr":218,"pg":222,"pb":0,"nr":255,"ng":0,"nb":0,"pth":"rgb(0,0,0)","nth":"#800000","thtype":0,"thmin":0,"thmax":10,"thpercentile":90,"height":50,"summeth":1},"metadata":{}},{"type":"bigwig","name":"NCI-H460-L017-B1-T3-P002.pe.q10.sort.rmdup.RIPnorm","url":"https://s3.amazonaws.com/changseq/RyanCorces/TCGA-ATAC/CellLines/NCI-H460-L017-B1-T3-P002.pe.q10.sort.rmdup.RIPnorm.bw","mode":1,"qtc":{"anglescale":1,"pr":218,"pg":222,"pb":0,"nr":255,"ng":0,"nb":0,"pth":"rgb(0,0,0)","nth":"#800000","thtype":0,"thmin":0,"thmax":10,"thpercentile":90,"height":50,"summeth":1},"metadata":{}},{"type":"bigwig","name":"UO31-L009-B1-T1-P003.pe.q10.sort.rmdup.RIPnorm","url":"https://s3.amazonaws.com/changseq/RyanCorces/TCGA-ATAC/CellLines/UO31-L009-B1-T1-P003.pe.q10.sort.rmdup.RIPnorm.bw","mode":1,"qtc":{"anglescale":1,"pr":255,"pg":181,"pb":202,"nr":255,"ng":0,"nb":0,"pth":"rgb(0,0,0)","nth":"#800000","thtype":0,"thmin":0,"thmax":10,"thpercentile":90,"height":50,"summeth":1},"metadata":{}},{"type":"bigwig","name":"UO31-L010-B1-T2-P002.pe.q10.sort.rmdup.RIPnorm","url":"https://s3.amazonaws.com/changseq/RyanCorces/TCGA-ATAC/CellLines/UO31-L010-B1-T2-P002.pe.q10.sort.rmdup.RIPnorm.bw","mode":1,"qtc":{"anglescale":1,"pr":255,"pg":181,"pb":202,"nr":255,"ng":0,"nb":0,"pth":"rgb(0,0,0)","nth":"#800000","thtype":0,"thmin":0,"thmax":10,"thpercentile":90,"height":50,"summeth":1},"metadata":{}},{"type":"bigwig","name":"UO31-L011-B1-T3-P003.pe.q10.sort.rmdup.RIPnorm","url":"https://s3.amazonaws.com/changseq/RyanCorces/TCGA-ATAC/CellLines/UO31-L011-B1-T3-P003.pe.q10.sort.rmdup.RIPnorm.bw","mode":1,"qtc":{"anglescale":1,"pr":255,"pg":181,"pb":202,"nr":255,"ng":0,"nb":0,"pth":"rgb(0,0,0)","nth":"#800000","thtype":0,"thmin":0,"thmax":10,"thpercentile":90,"height":50,"summeth":1},"metadata":{}},{"type":"bed","name":"180518_Enhancer_links_final.bed","url":"http://epigenomegateway.wustl.edu/browser/t/528834751.txt.gz","mode":3,"qtc":{"anglescale":1,"pr":255,"pg":0,"pb":0,"nr":0,"ng":0,"nb":230,"pth":"#800000","nth":"#000099","thtype":0,"thmin":0,"thmax":10,"thpercentile":95,"height":50,"summeth":1,"textcolor":"#000000","fontsize":"8pt","fontfamily":"sans-serif","fontbold":false,"bedcolor":"#336666"},"metadata":{}},{"type":"native_track","list":[{"name":"refGene","mode":3,"qtc":{"anglescale":1,"pr":255,"pg":0,"pb":0,"nr":0,"ng":0,"nb":230,"pth":"#800000","nth":"#000099","thtype":0,"thmin":0,"thmax":10,"thpercentile":95,"height":50,"summeth":1,"textcolor":"#000000","fontsize":"8pt","fontfamily":"sans-serif","fontbold":false,"bedcolor":"#002EB8"},"metadata":{},"details":{"source":"UCSC Genome Browser","download date":"March 7, 2014"}},{"name":"rmsk_all","mode":7,"qtc":{"anglescale":1,"pr":255,"pg":0,"pb":0,"nr":0,"ng":0,"nb":230,"pth":"#800000","nth":"#000099","thtype":0,"thmin":0,"thmax":10,"thpercentile":95,"height":35,"summeth":1,"textcolor":"#000000","fontsize":"8pt","fontfamily":"sans-serif","fontbold":false,"bedcolor":"#336666"},"showscoreidx":2,"scorenamelst":["Smith-Waterman score","SW score normalized by length","1-divergence%"],"scorescalelst":[{"type":0},{"type":0},{"type":0}],"metadata":{},"categories":{"1":["SINE - short interspersed nuclear elements","#cc0000"],"2":["LINE - long interspersed nuclear element","#FF6600"],"3":["LTR - long terminal repeat element","#006600"],"4":["DNA transposon","#4A72E8"],"5":["Simple repeat, micro-satellite","#AB833B"],"6":["Satellite repeat","#660000"],"7":["Low complexity repeat","#663333"],"8":["RNA repeat","#cc33ff"],"9":["Other repeats","#488E8E"],"10":["Unknown","#5C5C5C"],"11":["Retroposon","#EA53C4"],"-1":["no information","transparent"]}}]},{"type":"metadata","vocabulary_set":{}},{"type":"coordinate_override","coord":"chr9,5400302,chr9,5520619"}]