[{"type":"bam","name":"H9_I RNA tags","url":"http://sysbio.ucsd.edu/public/rivasas2/browser/RNAchrom/json/H9_I_rna.sorted.bam","mode":6,"qtc":{"anglescale":1,"pr":255,"pg":0,"pb":0,"nr":0,"ng":0,"nb":230,"pth":"#800000","nth":"#000099","thtype":0,"thmin":0,"thmax":10,"thpercentile":95,"height":50,"summeth":1,"textcolor":"#000000","fontsize":"8pt","fontfamily":"sans-serif","fontbold":false,"forwardcolor":"rgb(0,0,153)","reversecolor":"rgb(153,0,0)","mismatchcolor":"rgb(255,255,0)","bedcolor":"#0000ff"},"metadata":{}},{"type":"bam","name":"H9_I DNA tags","url":"http://sysbio.ucsd.edu/public/rivasas2/browser/RNAchrom/json/H9_I_dna.sorted.bam","mode":6,"qtc":{"anglescale":1,"pr":255,"pg":0,"pb":0,"nr":0,"ng":0,"nb":230,"pth":"#800000","nth":"#000099","thtype":0,"thmin":0,"thmax":10,"thpercentile":95,"height":50,"summeth":1,"textcolor":"#000000","fontsize":"8pt","fontfamily":"sans-serif","fontbold":false,"forwardcolor":"rgb(0,0,153)","reversecolor":"rgb(153,0,0)","mismatchcolor":"rgb(255,255,0)","bedcolor":"#7f00ff"},"metadata":{}},{"type":"interaction","name":"H9_I links","url":"http://sysbio.ucsd.edu/public/rivasas2/browser/RNAchrom/json/H9_I_inte.sorted.txt.gz","mode":4,"qtc":{"anglescale":1,"textcolor":"#000000","thtype":0,"fontsize":"8pt","fontfamily":"sans-serif","fontbold":false,"pr":184,"pg":0,"pb":138,"nr":0,"ng":99,"nb":133,"pcolorscore":0,"ncolorscore":0,"pfilterscore":0,"nfilterscore":0,"height":50,"bedcolor":"#000066"},"metadata":{}},{"type":"bigwig","name":"H9_I DNA Peaks","url":"http://sysbio.ucsd.edu/public/rivasas2/browser/RNAchrom/json/H9_I_dnaPeaks.bigwig","mode":1,"qtc":{"anglescale":1,"pr":165,"pg":42,"pb":42,"nr":165,"ng":42,"nb":42,"pth":"#000099","nth":"#800000","thtype":0,"thmin":0,"thmax":10,"thpercentile":90,"height":15,"summeth":1},"metadata":{}},{"type":"bigwig","name":"H9_I DNA Density","url":"http://sysbio.ucsd.edu/public/rivasas2/browser/RNAchrom/json/H9_I_dnaPeakDensity.bigwig","mode":1,"qtc":{"anglescale":1,"pr":165,"pg":42,"pb":42,"nr":165,"ng":42,"nb":42,"pth":"#000099","nth":"#800000","thtype":0,"thmin":0,"thmax":10,"thpercentile":90,"height":20,"summeth":1},"metadata":{}},{"type":"bam","name":"H9_I Gene expression","url":"http://sysbio.ucsd.edu/public/rivasas2/browser/RNAchrom/json/H9_rnaseq.bam","mode":6,"qtc":{"anglescale":1,"pr":255,"pg":165,"pb":0,"nr":0,"ng":0,"nb":230,"pth":"#800000","nth":"#000099","thtype":0,"thmin":0,"thmax":10,"thpercentile":95,"height":50,"summeth":1,"textcolor":"#000000","fontsize":"8pt","fontfamily":"sans-serif","fontbold":false,"forwardcolor":"rgb(0,0,153)","reversecolor":"rgb(153,0,0)","mismatchcolor":"rgb(255,255,0)"},"metadata":{}},{"type":"bigwig","name":"H9_I H3K4me3","url":"http://sysbio.ucsd.edu/public/rivasas2/browser/RNAchrom/json/H9_I_H3K4me3.bigwig","mode":1,"qtc":{"anglescale":1,"pr":128,"pg":128,"pb":0,"nr":128,"ng":128,"nb":0,"pth":"#000099","nth":"#800000","thtype":0,"thmin":0,"thmax":10,"thpercentile":90,"height":20,"summeth":1},"metadata":{}},{"type":"bigwig","name":"H9_I H3K9me3","url":"http://sysbio.ucsd.edu/public/rivasas2/browser/RNAchrom/json/H9_I_H3K9me3.bigwig","mode":1,"qtc":{"anglescale":1,"pr":128,"pg":128,"pb":0,"nr":128,"ng":128,"nb":0,"pth":"#000099","nth":"#800000","thtype":0,"thmin":0,"thmax":10,"thpercentile":90,"height":20,"summeth":1},"metadata":{}},{"type":"bam","name":"HEK_I RNA tags","url":"http://sysbio.ucsd.edu/public/rivasas2/browser/RNAchrom/json/HEK_I_rna.sorted.bam","mode":6,"qtc":{"anglescale":1,"pr":255,"pg":0,"pb":0,"nr":0,"ng":0,"nb":230,"pth":"#800000","nth":"#000099","thtype":0,"thmin":0,"thmax":10,"thpercentile":95,"height":50,"summeth":1,"textcolor":"#000000","fontsize":"8pt","fontfamily":"sans-serif","fontbold":false,"forwardcolor":"rgb(0,0,153)","reversecolor":"rgb(153,0,0)","mismatchcolor":"rgb(255,255,0)","bedcolor":"#0000ff"},"metadata":{}},{"type":"bam","name":"HEK_I DNA tags","url":"http://sysbio.ucsd.edu/public/rivasas2/browser/RNAchrom/json/HEK_I_dna.sorted.bam","mode":6,"qtc":{"anglescale":1,"pr":255,"pg":0,"pb":0,"nr":0,"ng":0,"nb":230,"pth":"#800000","nth":"#000099","thtype":0,"thmin":0,"thmax":10,"thpercentile":95,"height":50,"summeth":1,"textcolor":"#000000","fontsize":"8pt","fontfamily":"sans-serif","fontbold":false,"forwardcolor":"rgb(0,0,153)","reversecolor":"rgb(153,0,0)","mismatchcolor":"rgb(255,255,0)","bedcolor":"#7f00ff"},"metadata":{}},{"type":"interaction","name":"HEK_I links","url":"http://sysbio.ucsd.edu/public/rivasas2/browser/RNAchrom/json/HEK_I_inte.sorted.txt.gz","mode":4,"qtc":{"anglescale":1,"textcolor":"#000000","thtype":0,"fontsize":"8pt","fontfamily":"sans-serif","fontbold":false,"pr":184,"pg":0,"pb":138,"nr":0,"ng":99,"nb":133,"pcolorscore":10,"ncolorscore":0,"pfilterscore":0,"nfilterscore":0,"height":50,"bedcolor":"#000066"},"metadata":{}},{"type":"bigwig","name":"HEK_I DNA Peaks","url":"http://sysbio.ucsd.edu/public/rivasas2/browser/RNAchrom/json/HEK_I_dnaPeaks.bigwig","mode":1,"qtc":{"anglescale":1,"pr":0,"pg":0,"pb":230,"nr":255,"ng":0,"nb":0,"pth":"#000099","nth":"#800000","thtype":0,"thmin":0,"thmax":10,"thpercentile":90,"height":15,"summeth":1},"metadata":{}},{"type":"bigwig","name":"HEK_I DNA Density","url":"http://sysbio.ucsd.edu/public/rivasas2/browser/RNAchrom/json/HEK_I_dnaPeakDensity.bigwig","mode":1,"qtc":{"anglescale":1,"pr":165,"pg":42,"pb":42,"nr":165,"ng":42,"nb":42,"pth":"#000099","nth":"#800000","thtype":0,"thmin":0,"thmax":10,"thpercentile":90,"height":20,"summeth":1},"metadata":{}},{"type":"bed","name":"HEK_I Gene expression","url":"http://sysbio.ucsd.edu/public/rivasas2/browser/RNAchrom/json/HEK_rnaseq.bed.gz","mode":6,"qtc":{"anglescale":1,"pr":255,"pg":165,"pb":0,"nr":0,"ng":0,"nb":230,"pth":"#800000","nth":"#000099","thtype":0,"thmin":0,"thmax":10,"thpercentile":95,"height":50,"summeth":1,"textcolor":"#000000","fontsize":"8pt","fontfamily":"sans-serif","fontbold":false,"bedcolor":"#336666"},"metadata":{}},{"type":"bigwig","name":"HEK_I H3K4me3","url":"http://sysbio.ucsd.edu/public/rivasas2/browser/RNAchrom/json/HEK_I_H3K4me3.bigwig","mode":1,"qtc":{"anglescale":1,"pr":128,"pg":128,"pb":0,"nr":128,"ng":128,"nb":0,"pth":"#000099","nth":"#800000","thtype":0,"thmin":0,"thmax":10,"thpercentile":90,"height":20,"summeth":1},"metadata":{}},{"type":"bigwig","name":"HEK_I H3K9me3","url":"http://sysbio.ucsd.edu/public/rivasas2/browser/RNAchrom/json/HEK_I_H3K9me3.bigwig","mode":1,"qtc":{"anglescale":1,"pr":128,"pg":128,"pb":0,"nr":128,"ng":128,"nb":0,"pth":"#000099","nth":"#800000","thtype":0,"thmin":0,"thmax":10,"thpercentile":90,"height":20,"summeth":1},"metadata":{}},{"type":"native_track","list":[{"name":"rmsk_all","mode":6,"qtc":{"anglescale":1,"pr":138,"pg":43,"pb":226,"nr":0,"ng":0,"nb":230,"pth":"#800000","nth":"#000099","thtype":0,"thmin":0,"thmax":10,"thpercentile":95,"height":35,"summeth":1,"textcolor":"#000000","fontsize":"8pt","fontfamily":"sans-serif","fontbold":false,"bedcolor":"#336666"},"showscoreidx":2,"scorenamelst":["Smith-Waterman score","SW score normalized by length","1-divergence%"],"scorescalelst":[{"type":0},{"type":0},{"type":0}],"metadata":{},"categories":{"1":["SINE - short interspersed nuclear elements","#cc0000"],"2":["LINE - long interspersed nuclear element","#FF6600"],"3":["LTR - long terminal repeat element","#006600"],"4":["DNA transposon","#4A72E8"],"5":["Simple repeat, micro-satellite","#AB833B"],"6":["Satellite repeat","#660000"],"7":["Low complexity repeat","#663333"],"8":["RNA repeat","#cc33ff"],"9":["Other repeats","#488E8E"],"10":["Unknown","#5C5C5C"],"11":["Retroposon","#EA53C4"],"-1":["no information","transparent"]}},{"name":"gencodeV23","mode":6,"qtc":{"anglescale":1,"pr":0,"pg":128,"pb":0,"nr":0,"ng":0,"nb":230,"pth":"#800000","nth":"#000099","thtype":0,"thmin":0,"thmax":10,"thpercentile":95,"height":50,"summeth":1,"textcolor":"#000000","fontsize":"8pt","fontfamily":"sans-serif","fontbold":false,"bedcolor":"#336666"},"metadata":{},"categories":{"1":["coding","rgb(0,60,179)"],"2":["non-coding","rgb(0,128,0)"],"3":["pseudogene","rgb(230,0,172)"],"4":["problem","rgb(255,0,0)"],"5":["polyA","rgb(0,0,51)"],"-1":["no information","transparent"]}}]},{"type":"metadata","vocabulary_set":{}},{"type":"coordinate_override","coord":"chr7,27066840,chr7,27266928"}]