[{"type":"interaction","name":"Rick_Young_Jurkat_CTCF_ChIA_PET_2016","url":"http://enhancer.ucsd.edu/celso_espinoza/WUST_browser/W_browser/mES/4cnchiphic/chip-hic/4-17-2018/Rick.young.jurkat.2016.txt.sorted.gz","mode":4,"qtc":{"anglescale":1,"textcolor":"#000000","thtype":0,"fontsize":"8pt","fontfamily":"sans-serif","fontbold":false,"pr":20,"pg":89,"pb":94,"nr":0,"ng":99,"nb":133,"pcolorscore":17,"ncolorscore":0,"pfilterscore":2,"nfilterscore":-2,"height":50,"labelFontSize":14},"metadata":{}},{"type":"interaction","name":"Reads_around_SNPs_with Cacao_H3K27ac","url":"http://enhancer.ucsd.edu/celso_espinoza/WUST_browser/W_browser/mES/4cnchiphic/chip-hic/4-17-2018/final.1.bam.bam.3.count_in_1kb.sorted.gz","mode":6,"qtc":{"anglescale":1,"textcolor":"#000000","thtype":1,"fontsize":"8pt","fontfamily":"sans-serif","fontbold":false,"pr":214,"pg":105,"pb":77,"nr":0,"ng":99,"nb":133,"pcolorscore":20,"ncolorscore":0,"pfilterscore":2,"nfilterscore":-2,"height":50,"labelFontSize":14},"metadata":{}},{"type":"interaction","name":"Reads_around_SNPs_Cacao_H3K4me3","url":"http://enhancer.ucsd.edu/celso_espinoza/WUST_browser/W_browser/mES/4cnchiphic/chip-hic/4-17-2018/final.2.bam.bam.3.count_in_1kb.sorted.gz","mode":6,"qtc":{"anglescale":1,"textcolor":"#000000","thtype":0,"fontsize":"8pt","fontfamily":"sans-serif","fontbold":false,"pr":255,"pg":69,"pb":23,"nr":0,"ng":99,"nb":133,"pcolorscore":14,"ncolorscore":0,"pfilterscore":2,"nfilterscore":-2,"height":50,"labelFontSize":14},"metadata":{}},{"type":"interaction","name":"Reads_around_SNPs_with Cacao_CTCF","url":"http://enhancer.ucsd.edu/celso_espinoza/WUST_browser/W_browser/mES/4cnchiphic/chip-hic/4-17-2018/final.3.bam.bam.3.count_in_1kb.sorted.gz","mode":6,"qtc":{"anglescale":1,"textcolor":"#000000","thtype":1,"fontsize":"8pt","fontfamily":"sans-serif","fontbold":false,"pr":20,"pg":89,"pb":94,"nr":0,"ng":99,"nb":133,"pcolorscore":20,"ncolorscore":0,"pfilterscore":2,"nfilterscore":-2,"height":50,"labelFontSize":14},"metadata":{}},{"type":"bigwig","name":"Cacao_CTCF.bw","url":"http://enhancer.ucsd.edu/celso_espinoza/WUST_browser/W_browser/mES/CTCF_caco.bw","mode":1,"qtc":{"anglescale":1,"pr":20,"pg":89,"pb":94,"nr":255,"ng":0,"nb":0,"pth":"#000099","nth":"#800000","thtype":1,"thmin":0,"thmax":100,"thpercentile":90,"height":75,"summeth":1,"labelFontSize":14},"metadata":{}},{"type":"interaction","name":"Cacao_CTCF_500bp_bins","url":"http://enhancer.ucsd.edu/celso_espinoza/WUST_browser/W_browser/mES/4cnchiphic/chip-hic/4-17-2018/unfilter/final.3.bam.bam.1000.or.more.txt.count_in_500bases.sorted.gz","mode":6,"qtc":{"anglescale":1,"textcolor":"#000000","thtype":0,"fontsize":"8pt","fontfamily":"sans-serif","fontbold":false,"pr":20,"pg":89,"pb":94,"nr":0,"ng":99,"nb":133,"pcolorscore":12,"ncolorscore":0,"pfilterscore":2,"nfilterscore":-2,"height":50,"labelFontSize":14},"metadata":{}},{"type":"bigwig","name":"Cacao_H3K27ac.bw","url":"http://enhancer.ucsd.edu/celso_espinoza/WUST_browser/W_browser/mES/H3K27ac_rep3_caco.bw","mode":1,"qtc":{"anglescale":1,"pr":214,"pg":105,"pb":77,"nr":255,"ng":0,"nb":0,"pth":"#000099","nth":"#800000","thtype":1,"thmin":0,"thmax":100,"thpercentile":90,"height":75,"summeth":1,"labelFontSize":14},"metadata":{}},{"type":"interaction","name":"inflammatory_bowel_disease_IBD","url":"http://enhancer.ucsd.edu/celso_espinoza/WUST_browser/W_browser/mES/4cnchiphic/vcf.for.celso.data/Inflammatory_Bowel_Disease_2.sorted.gz","mode":6,"qtc":{"anglescale":1,"textcolor":"#000000","thtype":0,"fontsize":"8pt","fontfamily":"sans-serif","fontbold":false,"pr":184,"pg":0,"pb":138,"nr":0,"ng":99,"nb":133,"pcolorscore":2,"ncolorscore":0,"pfilterscore":2,"nfilterscore":-2,"height":50,"labelFontSize":14},"metadata":{}},{"type":"bigwig","name":"Cacao_H3K4me3.bw","url":"http://enhancer.ucsd.edu/celso_espinoza/WUST_browser/W_browser/mES/H3K4me3_caco.bw","mode":1,"qtc":{"anglescale":1,"pr":255,"pg":69,"pb":23,"nr":255,"ng":0,"nb":0,"pth":"#000099","nth":"#800000","thtype":1,"thmin":0,"thmax":100,"thpercentile":90,"height":80,"summeth":1,"labelFontSize":14},"metadata":{}},{"type":"interaction","name":"Cacao_H3K4me3_500bp_bins","url":"http://enhancer.ucsd.edu/celso_espinoza/WUST_browser/W_browser/mES/4cnchiphic/chip-hic/4-17-2018/unfilter/final.2.bam.bam.1000.or.more.txt.count_in_500bases.sorted.gz","mode":4,"qtc":{"anglescale":1,"textcolor":"#000000","thtype":0,"fontsize":"8pt","fontfamily":"sans-serif","fontbold":false,"pr":255,"pg":69,"pb":23,"nr":0,"ng":99,"nb":133,"pcolorscore":16,"ncolorscore":0,"pfilterscore":2,"nfilterscore":-2,"height":50,"labelFontSize":14},"metadata":{}},{"type":"interaction","name":"Cacao_H3K27ac_500bp_bins","url":"http://enhancer.ucsd.edu/celso_espinoza/WUST_browser/W_browser/mES/4cnchiphic/chip-hic/4-17-2018/unfilter/final.1.bam.bam.1000.or.more.txt.count_in_500bases.sorted.gz","mode":4,"qtc":{"anglescale":1,"textcolor":"#000000","thtype":0,"fontsize":"8pt","fontfamily":"sans-serif","fontbold":false,"pr":214,"pg":105,"pb":77,"nr":0,"ng":99,"nb":133,"pcolorscore":18,"ncolorscore":0,"pfilterscore":2,"nfilterscore":-2,"height":50,"labelFontSize":14},"metadata":{}},{"type":"interaction","name":"ulcerative_colitis_disease_IBD","url":"http://enhancer.ucsd.edu/celso_espinoza/WUST_browser/W_browser/mES/4cnchiphic/vcf.for.celso.data/Ulcerative_colitis_2.sorted.gz","mode":6,"qtc":{"anglescale":1,"textcolor":"#000000","thtype":0,"fontsize":"8pt","fontfamily":"sans-serif","fontbold":false,"pr":184,"pg":0,"pb":138,"nr":0,"ng":99,"nb":133,"pcolorscore":0,"ncolorscore":0,"pfilterscore":2,"nfilterscore":-2,"height":50,"labelFontSize":14},"metadata":{}},{"type":"interaction","name":"chrohns_IBD","url":"http://enhancer.ucsd.edu/celso_espinoza/WUST_browser/W_browser/mES/4cnchiphic/vcf.for.celso.data/Crohns_Disease_2.sorted.gz","mode":6,"qtc":{"anglescale":1,"textcolor":"#000000","thtype":0,"fontsize":"8pt","fontfamily":"sans-serif","fontbold":false,"pr":184,"pg":0,"pb":138,"nr":0,"ng":99,"nb":133,"pcolorscore":0,"ncolorscore":0,"pfilterscore":2,"nfilterscore":-2,"height":50,"labelFontSize":14},"metadata":{}},{"type":"interaction","name":"Cacao_H3K27ac_all_reads","url":"http://enhancer.ucsd.edu/celso_espinoza/WUST_browser/W_browser/mES/4cnchiphic/chip-hic/4-17-2018/unfilter/final.1.bam.bam.1000.or.more.txt.sorted.gz","mode":6,"qtc":{"anglescale":1,"textcolor":"#000000","thtype":0,"fontsize":"8pt","fontfamily":"sans-serif","fontbold":false,"pr":214,"pg":105,"pb":77,"nr":0,"ng":99,"nb":133,"pcolorscore":2,"ncolorscore":0,"pfilterscore":2,"nfilterscore":-2,"height":50,"labelFontSize":14},"metadata":{}},{"type":"interaction","name":"Cacao_H3K4me3_all_reads","url":"http://enhancer.ucsd.edu/celso_espinoza/WUST_browser/W_browser/mES/4cnchiphic/chip-hic/4-17-2018/unfilter/final.2.bam.bam.1000.or.more.txt.sorted.gz","mode":6,"qtc":{"anglescale":1,"textcolor":"#000000","thtype":0,"fontsize":"8pt","fontfamily":"sans-serif","fontbold":false,"pr":255,"pg":69,"pb":23,"nr":0,"ng":99,"nb":133,"pcolorscore":2,"ncolorscore":0,"pfilterscore":2,"nfilterscore":-2,"height":50,"labelFontSize":14},"metadata":{}},{"type":"interaction","name":"Cacao_CTCF_all_reads","url":"http://enhancer.ucsd.edu/celso_espinoza/WUST_browser/W_browser/mES/4cnchiphic/chip-hic/4-17-2018/unfilter/final.3.bam.bam.1000.or.more.txt.sorted.gz","mode":6,"qtc":{"anglescale":1,"textcolor":"#000000","thtype":0,"fontsize":"8pt","fontfamily":"sans-serif","fontbold":false,"pr":20,"pg":89,"pb":94,"nr":0,"ng":99,"nb":133,"pcolorscore":2,"ncolorscore":0,"pfilterscore":2,"nfilterscore":-2,"height":50,"labelFontSize":14},"metadata":{}},{"type":"bedgraph","name":"4C-data-Sujana","url":"http://epigenomegateway.wustl.edu/browser/t/547802625.txt.gz","mode":1,"qtc":{"anglescale":1,"pr":0,"pg":0,"pb":230,"nr":255,"ng":0,"nb":0,"pth":"#000099","nth":"#800000","thtype":1,"thmin":0,"thmax":6000,"thpercentile":90,"height":105,"summeth":1,"labelFontSize":14},"metadata":{}},{"type":"bedgraph","name":"4C-data-Sujana-2","url":"http://epigenomegateway.wustl.edu/browser/t/2008906090.txt.gz","mode":1,"qtc":{"anglescale":1,"pr":0,"pg":0,"pb":230,"nr":255,"ng":0,"nb":0,"pth":"#000099","nth":"#800000","thtype":1,"thmin":0,"thmax":6000,"thpercentile":90,"height":70,"summeth":1,"labelFontSize":14},"metadata":{}},{"type":"bedgraph","name":"4C-data-Sujana-2-from-the-right","url":"http://epigenomegateway.wustl.edu/browser/t/1211593368.txt.gz","mode":1,"qtc":{"anglescale":1,"pr":0,"pg":0,"pb":230,"nr":255,"ng":0,"nb":0,"pth":"#000099","nth":"#800000","thtype":1,"thmin":0,"thmax":30000,"thpercentile":90,"height":115,"summeth":1,"labelFontSize":14},"metadata":{}},{"type":"bigwig","name":"publish_4C_data-b","url":"http://enhancer.ucsd.edu/celso_espinoza/WUST_browser/W_browser/mES/published_4C_data_in_SNP_10.bw","mode":1,"qtc":{"anglescale":1,"pr":0,"pg":0,"pb":230,"nr":255,"ng":0,"nb":0,"pth":"#000099","nth":"#800000","thtype":0,"thmin":0,"thmax":3,"thpercentile":95,"height":175,"summeth":1,"labelFontSize":14,"smooth":11,"bg":null,"logtype":1},"metadata":{}},{"type":"native_track","list":[{"name":"refGene","mode":3,"qtc":{"anglescale":1,"pr":255,"pg":0,"pb":0,"nr":0,"ng":0,"nb":230,"pth":"#800000","nth":"#000099","thtype":0,"thmin":0,"thmax":10,"thpercentile":95,"height":50,"summeth":1,"textcolor":"#000000","fontsize":"11pt","fontfamily":"sans-serif","fontbold":true,"bedcolor":"#002EB8","labelFontSize":14,"bg":null},"metadata":{},"details":{"source":"UCSC Genome Browser","download date":"Jan 1, 2012"}},{"name":"rmsk_all","mode":7,"qtc":{"anglescale":1,"pr":255,"pg":0,"pb":0,"nr":0,"ng":0,"nb":230,"pth":"#800000","nth":"#000099","thtype":0,"thmin":0,"thmax":10,"thpercentile":95,"height":35,"summeth":1,"textcolor":"#000000","fontsize":"8pt","fontfamily":"sans-serif","fontbold":false,"bedcolor":"#336666"},"showscoreidx":2,"scorenamelst":["Smith-Waterman score","SW score normalized by length","1-divergence%"],"scorescalelst":[{"type":0},{"type":0},{"type":0}],"metadata":{},"categories":{"1":["SINE - short interspersed nuclear elements","#cc0000"],"2":["LINE - long interspersed nuclear element","#FF6600"],"3":["LTR - long terminal repeat element","#006600"],"4":["DNA transposon","#4A72E8"],"5":["Simple repeat, micro-satellite","#AB833B"],"6":["Satellite repeat","#660000"],"7":["Low complexity repeat","#663333"],"8":["RNA repeat","#cc33ff"],"9":["Other repeats","#488E8E"],"10":["Unknown","#5C5C5C"],"-1":["no information","transparent"]}}]},{"type":"bedgraph","name":"counts_CDX2-4F_1_2c.bedGraph","url":"http://epigenomegateway.wustl.edu/browser/t/124126076.txt.gz","mode":"hide","qtc":{"labelFontSize":14,"thtype":1,"thmin":0,"thmax":30000},"metadata":{}},{"type":"metadata","vocabulary_set":{}},{"type":"coordinate_override","coord":"chr1,6904448,chr1,8199032"}]