[{"type":"bed","name":"rs78037977_Location.txt","url":"http://epigenomegateway.wustl.edu/browser/t/209161538.txt.gz","mode":3,"qtc":{"anglescale":1,"pr":255,"pg":0,"pb":0,"nr":0,"ng":0,"nb":230,"pth":"#800000","nth":"#000099","thtype":0,"thmin":0,"thmax":10,"thpercentile":95,"height":50,"summeth":1,"textcolor":"#000000","fontsize":"8pt","fontfamily":"sans-serif","fontbold":false,"bedcolor":"#336666"},"metadata":{}},{"type":"interaction","name":"HiC GM12878 50Kb KR norm","url":"http://epgg-test.wustl.edu/dli/long-range-test/dli/GM12878_combined_50kb_resolution_intrachromosomal.processed.KRnorm.sort.gz","mode":4,"qtc":{"anglescale":1,"textcolor":"#000000","thtype":0,"fontsize":"8pt","fontfamily":"sans-serif","fontbold":false,"pr":184,"pg":0,"pb":138,"nr":0,"ng":99,"nb":133,"pcolorscore":1108772.38739,"ncolorscore":0,"pfilterscore":300000,"nfilterscore":0,"height":10},"metadata":{"md1":["13047"],"md2":["27003"],"md4":["30022"]},"details":{"Publication":"Rao SS, Huntley MH, Durand NC, Stamenova EK et al. A 3D map of the human genome at kilobase resolution reveals principles of chromatin looping. Cell 2014 Dec 18;159(7):1665-80.","PMID":"25497547"},"geolst":["GSE63525"]},{"type":"interaction","name":"ChIA-PET T-ALL Jurkat Cells SMC1-R1andR2merged","url":"http://epgg-test.wustl.edu/dli/long-range-mc/hg19/interaction_GSE68977_rep1rep2merge_filtered_PET_interactionSummary_n3FDR0.01_intrachromosomal.bed12.gz","mode":4,"qtc":{"anglescale":1,"textcolor":"#000000","thtype":0,"fontsize":"8pt","fontfamily":"sans-serif","fontbold":false,"pr":184,"pg":0,"pb":138,"nr":0,"ng":99,"nb":133,"pcolorscore":20,"ncolorscore":0,"pfilterscore":0,"nfilterscore":0,"height":10},"metadata":{"md1":["14007"],"md2":["27001"],"md4":["30039"]},"details":{"Publication":"Hnisz D, Weintraub AS, Day DS, Valton AL et al. Activation of proto-oncogenes by disruption of chromosome neighborhoods. Science 2016 Mar 25;351(6280):1454-8.","PMID":"26940867"},"geolst":["GSE68977"]},{"type":"interaction","name":"GIS-Ruan_ChiaPet_HeLa-S3_Pol2","url":"http://epgg-test.wustl.edu/dli/long-range-mc/hg19/interaction_GSM970211_hg19_wgEncodeGisChiaPetHelas3Pol2InteractionsRep1.bed.txt.gz","mode":4,"qtc":{"anglescale":1,"textcolor":"#000000","thtype":0,"fontsize":"8pt","fontfamily":"sans-serif","fontbold":false,"pr":184,"pg":0,"pb":138,"nr":0,"ng":99,"nb":133,"pcolorscore":0,"ncolorscore":0,"pfilterscore":0,"nfilterscore":0,"height":10},"metadata":{"md1":["14001"],"md2":["27001"],"md4":["30018"]},"details":{"Publication":"NA","PMID":"NA"},"geolst":["GSE39495","GSM970211"]},{"type":"interaction","name":"ChIA-PET HeLa RNAPolII","url":"http://epgg-test.wustl.edu/dli/long-range-mc/hg19/interaction_GSM1872889_HeLa_RNAPII_PET_clusters.txt.gz","mode":4,"qtc":{"anglescale":1,"textcolor":"#000000","thtype":0,"fontsize":"8pt","fontfamily":"sans-serif","fontbold":false,"pr":184,"pg":0,"pb":138,"nr":0,"ng":99,"nb":133,"pcolorscore":2,"ncolorscore":0,"pfilterscore":0,"nfilterscore":0,"height":10},"metadata":{"md1":["14001"],"md2":["27001"],"md4":["30041"]},"details":{"Publication":"Tang Z, Luo OJ, Li X, Zheng M et al. CTCF-Mediated Human 3D Genome Architecture Reveals Chromatin Topology for Transcription. Cell 2015 Dec 17;163(7):1611-27.","PMID":"26686651"},"geolst":["GSE72816","GSM1872889"]},{"type":"interaction","name":"ChIA-PET HeLa CTCF","url":"http://epgg-test.wustl.edu/dli/long-range-mc/hg19/interaction_GSM1872888_HeLa_CTCF_PET_clusters.txt.gz","mode":4,"qtc":{"anglescale":1,"textcolor":"#000000","thtype":0,"fontsize":"8pt","fontfamily":"sans-serif","fontbold":false,"pr":184,"pg":0,"pb":138,"nr":0,"ng":99,"nb":133,"pcolorscore":29,"ncolorscore":0,"pfilterscore":0,"nfilterscore":0,"height":10},"metadata":{"md1":["14001"],"md2":["27001"],"md4":["30041"]},"details":{"Publication":"Tang Z, Luo OJ, Li X, Zheng M et al. CTCF-Mediated Human 3D Genome Architecture Reveals Chromatin Topology for Transcription. Cell 2015 Dec 17;163(7):1611-27.","PMID":"26686651"},"geolst":["GSE72816","GSM1872888"]},{"type":"interaction","name":"GIS-Ruan_ChiaPet_K562_CTCF-R1","url":"http://epgg-test.wustl.edu/dli/long-range-mc/hg19/interaction_GSM970216_hg19_wgEncodeGisChiaPetK562CtcfInteractionsRep1.bed.txt.gz","mode":4,"qtc":{"anglescale":1,"textcolor":"#000000","thtype":0,"fontsize":"8pt","fontfamily":"sans-serif","fontbold":false,"pr":184,"pg":0,"pb":138,"nr":0,"ng":99,"nb":133,"pcolorscore":4,"ncolorscore":0,"pfilterscore":0,"nfilterscore":0,"height":10},"metadata":{"md1":["14018"],"md2":["27001"],"md4":["30018"]},"details":{"Publication":"NA","PMID":"NA"},"geolst":["GSE39495","GSM970216"]},{"type":"interaction","name":"GIS-Ruan_ChiaPet_K562_Pol2-R2","url":"http://epgg-test.wustl.edu/dli/long-range-mc/hg19/interaction_GSM970213_hg19_wgEncodeGisChiaPetK562Pol2InteractionsRep2.bed.txt.gz","mode":4,"qtc":{"anglescale":1,"textcolor":"#000000","thtype":0,"fontsize":"8pt","fontfamily":"sans-serif","fontbold":false,"pr":184,"pg":0,"pb":138,"nr":0,"ng":99,"nb":133,"pcolorscore":5,"ncolorscore":0,"pfilterscore":0,"nfilterscore":0,"height":10},"metadata":{"md1":["14018"],"md2":["27001"],"md4":["30018"]},"details":{"Publication":"NA","PMID":"NA"},"geolst":["GSE39495","GSM970213"]},{"type":"interaction","name":"ChIA-PET T-ALL Jurkat Cells SMC1-R2","url":"http://epgg-test.wustl.edu/dli/long-range-mc/hg19/interaction_GSM1689154_rep2_filtered_PET_interactionSummary_n2FDR0.01_intrachromosomal.bed12.gz","mode":4,"qtc":{"anglescale":1,"textcolor":"#000000","thtype":0,"fontsize":"8pt","fontfamily":"sans-serif","fontbold":false,"pr":184,"pg":0,"pb":138,"nr":0,"ng":99,"nb":133,"pcolorscore":12,"ncolorscore":0,"pfilterscore":0,"nfilterscore":0,"height":10},"metadata":{"md1":["14007"],"md2":["27001"],"md4":["30039"]},"details":{"Publication":"Hnisz D, Weintraub AS, Day DS, Valton AL et al. Activation of proto-oncogenes by disruption of chromosome neighborhoods. Science 2016 Mar 25;351(6280):1454-8.","PMID":"26940867"},"geolst":["GSE68977","GSM1689154"]},{"type":"interaction","name":"ChIA-PET T-ALL Jurkat Cells SMC1-R1","url":"http://epgg-test.wustl.edu/dli/long-range-mc/hg19/interaction_GSM1689153_rep1_filtered_PET_interactionSummary_n2FDR0.01_intrachromosomal.bed12.gz","mode":4,"qtc":{"anglescale":1,"textcolor":"#000000","thtype":0,"fontsize":"8pt","fontfamily":"sans-serif","fontbold":false,"pr":184,"pg":0,"pb":138,"nr":0,"ng":99,"nb":133,"pcolorscore":7,"ncolorscore":0,"pfilterscore":0,"nfilterscore":0,"height":10},"metadata":{"md1":["14007"],"md2":["27001"],"md4":["30039"]},"details":{"Publication":"Hnisz D, Weintraub AS, Day DS, Valton AL et al. Activation of proto-oncogenes by disruption of chromosome neighborhoods. Science 2016 Mar 25;351(6280):1454-8.","PMID":"26940867"},"geolst":["GSE68977","GSM1689153"]},{"type":"interaction","name":"H3K4me2 ChIA-PET in CD4+ T cells-R1andR2merged","url":"http://epgg-test.wustl.edu/dli/long-range-mc/hg19/interaction_GSE32677_hg18_H3K4me2_interact_Exp1_plus_Exp2.bed.txt.gz","mode":4,"qtc":{"anglescale":1,"textcolor":"#000000","thtype":0,"fontsize":"8pt","fontfamily":"sans-serif","fontbold":false,"pr":184,"pg":0,"pb":138,"nr":0,"ng":99,"nb":133,"pcolorscore":0,"ncolorscore":0,"pfilterscore":0,"nfilterscore":0,"height":10},"metadata":{"md1":["13288"],"md2":["27001"],"md4":["30040"]},"details":{"Publication":"Chepelev I, Wei G, Wangsa D, Tang Q et al. Characterization of genome-wide enhancer-promoter interactions reveals co-expression of interacting genes and modes of higher order chromatin organization. Cell Res 2012 Mar;22(3):490-503.","PMID":"22270183"},"geolst":["GSE32677"]},{"type":"interaction","name":"RAD21 ChIA-PET in GM12878-R2","url":"http://epgg-test.wustl.edu/dli/long-range-mc/hg19/interaction_GSM1436265_ENCFF002EMQ.txt.gz","mode":4,"qtc":{"anglescale":1,"textcolor":"#000000","thtype":0,"fontsize":"8pt","fontfamily":"sans-serif","fontbold":false,"pr":184,"pg":0,"pb":138,"nr":0,"ng":99,"nb":133,"pcolorscore":3.90037659075692,"ncolorscore":0,"pfilterscore":0,"nfilterscore":0,"height":10},"metadata":{"md1":["13047"],"md2":["27001"],"md4":["30018"]},"details":{"Publication":"Heidari N, Phanstiel DH, He C, Grubert F et al. Genome-wide map of regulatory interactions in the human genome. Genome Res 2014 Dec;24(12):1905-17.","PMID":"25228660"},"geolst":["GSE59395","GSM1436265"]},{"type":"interaction","name":"RAD21 ChIA-PET in GM12878-R1","url":"http://epgg-test.wustl.edu/dli/long-range-mc/hg19/interaction_GSM1436265_ENCFF002EMO.txt.gz","mode":4,"qtc":{"anglescale":1,"textcolor":"#000000","thtype":0,"fontsize":"8pt","fontfamily":"sans-serif","fontbold":false,"pr":184,"pg":0,"pb":138,"nr":0,"ng":99,"nb":133,"pcolorscore":3.50067595701742,"ncolorscore":0,"pfilterscore":0,"nfilterscore":0,"height":10},"metadata":{"md1":["13047"],"md2":["27001"],"md4":["30018"]},"details":{"Publication":"Heidari N, Phanstiel DH, He C, Grubert F et al. Genome-wide map of regulatory interactions in the human genome. Genome Res 2014 Dec;24(12):1905-17.","PMID":"25228660"},"geolst":["GSE59395","GSM1436265"]},{"type":"interaction","name":"ChIA-PET GM12878 RNAPolII","url":"http://epgg-test.wustl.edu/dli/long-range-mc/hg19/interaction_GSM1872887_GM12878_RNAPII_PET_clusters.txt.gz","mode":4,"qtc":{"anglescale":1,"textcolor":"#000000","thtype":0,"fontsize":"8pt","fontfamily":"sans-serif","fontbold":false,"pr":184,"pg":0,"pb":138,"nr":0,"ng":99,"nb":133,"pcolorscore":13,"ncolorscore":0,"pfilterscore":0,"nfilterscore":0,"height":10},"metadata":{"md1":["13047"],"md2":["27001"],"md4":["30041"]},"details":{"Publication":"Tang Z, Luo OJ, Li X, Zheng M et al. CTCF-Mediated Human 3D Genome Architecture Reveals Chromatin Topology for Transcription. Cell 2015 Dec 17;163(7):1611-27.","PMID":"26686651"},"geolst":["GSE72816","GSM1872887"]},{"type":"interaction","name":"ChIA-PET GM12878 CTCF","url":"http://epgg-test.wustl.edu/dli/long-range-mc/hg19/interaction_GSM1872886_GM12878_CTCF_PET_clusters.txt.gz","mode":4,"qtc":{"anglescale":1,"textcolor":"#000000","thtype":0,"fontsize":"8pt","fontfamily":"sans-serif","fontbold":false,"pr":184,"pg":0,"pb":138,"nr":0,"ng":99,"nb":133,"pcolorscore":112,"ncolorscore":0,"pfilterscore":0,"nfilterscore":0,"height":10},"metadata":{"md1":["13047"],"md2":["27001"],"md4":["30041"]},"details":{"Publication":"Tang Z, Luo OJ, Li X, Zheng M et al. CTCF-Mediated Human 3D Genome Architecture Reveals Chromatin Topology for Transcription. Cell 2015 Dec 17;163(7):1611-27.","PMID":"26686651"},"geolst":["GSE72816","GSM1872886"]},{"type":"native_track","list":[{"name":"rmsk_all","mode":7,"qtc":{"anglescale":1,"pr":255,"pg":0,"pb":0,"nr":0,"ng":0,"nb":230,"pth":"#800000","nth":"#000099","thtype":0,"thmin":0,"thmax":10,"thpercentile":95,"height":35,"summeth":1,"textcolor":"#000000","fontsize":"8pt","fontfamily":"sans-serif","fontbold":false,"bedcolor":"#336666"},"showscoreidx":2,"scorenamelst":["Smith-Waterman score","SW score normalized by length","1-divergence%"],"scorescalelst":[{"type":0},{"type":0},{"type":0}],"metadata":{},"categories":{"1":["SINE - short interspersed nuclear elements","#cc0000"],"2":["LINE - long interspersed nuclear element","#FF6600"],"3":["LTR - long terminal repeat element","#006600"],"4":["DNA transposon","#4A72E8"],"5":["Simple repeat, micro-satellite","#AB833B"],"6":["Satellite repeat","#660000"],"7":["Low complexity repeat","#663333"],"8":["RNA repeat","#cc33ff"],"9":["Other repeats","#488E8E"],"10":["Unknown","#5C5C5C"],"-1":["no information","transparent"]}},{"name":"refGene","mode":3,"qtc":{"anglescale":1,"pr":255,"pg":0,"pb":0,"nr":0,"ng":0,"nb":230,"pth":"#800000","nth":"#000099","thtype":0,"thmin":0,"thmax":10,"thpercentile":95,"height":50,"summeth":1,"textcolor":"#000000","fontsize":"8pt","fontfamily":"sans-serif","fontbold":false,"bedcolor":"#002EB8"},"metadata":{},"details":{"source":"UCSC Genome Browser","download date":"Jan 1, 2012"}}]},{"type":"metadata","vocabulary_set":{"md1":"http://vizhub.wustl.edu/metadata/human/Samples","md2":"http://vizhub.wustl.edu/metadata/Experimental_assays","md3":"http://vizhub.wustl.edu/metadata/human/Donor","md4":"http://vizhub.wustl.edu/metadata/Institutions"},"show_terms":{"md1":["Sample"],"md2":["Assay"]}},{"type":"coordinate_override","coord":"chr1,172550471,chr1,173351144"}]