[{"type":"bed","name":"170402_MB157_HCC1599_WO_REP_UNION_motif_1E-3.bed","url":"http://epigenomegateway.wustl.edu/browser/t/392589147.txt.gz","mode":3,"qtc":{"anglescale":1,"pr":255,"pg":0,"pb":0,"nr":0,"ng":0,"nb":230,"pth":"#800000","nth":"#000099","thtype":0,"thmin":0,"thmax":10,"thpercentile":95,"height":50,"summeth":1,"textcolor":"#000000","fontsize":"8pt","fontfamily":"sans-serif","fontbold":false,"bedcolor":"#336666"},"metadata":{}},{"type":"bed","name":"S90_170314_MB157_WO_H3K27ac_merged_RPM_rank_SE_sort_5col.bed","url":"http://epigenomegateway.wustl.edu/browser/t/1756915460.txt.gz","mode":3,"qtc":{"anglescale":1,"pr":255,"pg":0,"pb":0,"nr":0,"ng":0,"nb":230,"pth":"#800000","nth":"#000099","thtype":0,"thmin":0,"thmax":10,"thpercentile":95,"height":50,"summeth":1,"textcolor":"#000000","fontsize":"8pt","fontfamily":"sans-serif","fontbold":false,"bedcolor":"#336666"},"metadata":{}},{"type":"bigwig","name":"S90_170314_MB157_GSI_RBPJ_merged","url":"http://128.91.213.129/Breast_cancer_MB157_HCC1599/MergedNTC/S90_170314_MB157_GSI_RBPJ_merged_noBlack_sorted.bw","mode":1,"qtc":{"anglescale":1,"pr":0,"pg":0,"pb":255,"nr":0,"ng":0,"nb":255,"pth":"rgb(0, 0, 255)","nth":"rgb(0, 0, 255)","thtype":1,"thmin":0,"thmax":8,"thpercentile":90,"height":50,"summeth":2},"metadata":{}},{"type":"bigwig","name":"S90_170314_MB157_WO_RBPJ_merged","url":"http://128.91.213.129/Breast_cancer_MB157_HCC1599/MergedNTC/S90_170314_MB157_WO_RBPJ_merged_noBlack_sorted.bw","mode":1,"qtc":{"anglescale":1,"pr":0,"pg":0,"pb":255,"nr":0,"ng":0,"nb":255,"pth":"rgb(0, 0, 255)","nth":"rgb(0, 0, 255)","thtype":1,"thmin":0,"thmax":8,"thpercentile":90,"height":50,"summeth":2},"metadata":{}},{"type":"bigwig","name":"S90_170314_MB157_GSI_NOTCH1_merged","url":"http://128.91.213.129/Breast_cancer_MB157_HCC1599/MergedNTC/S90_170314_MB157_GSI_NOTCH1_merged_noBlack_sorted.bw","mode":1,"qtc":{"anglescale":1,"pr":0,"pg":0,"pb":255,"nr":0,"ng":0,"nb":255,"pth":"rgb(0, 0, 255)","nth":"rgb(0, 0, 255)","thtype":1,"thmin":0,"thmax":3,"thpercentile":90,"height":50,"summeth":2,"smooth":5},"metadata":{}},{"type":"bigwig","name":"S90_170314_MB157_WO_NOTCH1_merged","url":"http://128.91.213.129/Breast_cancer_MB157_HCC1599/MergedNTC/S90_170314_MB157_WO_NOTCH1_merged_noBlack_sorted.bw","mode":1,"qtc":{"anglescale":1,"pr":0,"pg":0,"pb":255,"nr":0,"ng":0,"nb":255,"pth":"rgb(0, 0, 255)","nth":"rgb(0, 0, 255)","thtype":1,"thmin":0,"thmax":3,"thpercentile":90,"height":50,"summeth":2,"smooth":5},"metadata":{}},{"type":"bigwig","name":"S90_170314_MB157_GSI_H3K27ac_merged","url":"http://128.91.213.129/Breast_cancer_MB157_HCC1599/MergedH3K27ac/S90_170314_MB157_GSI_H3K27ac_merged_noBlack_sorted.bw","mode":1,"qtc":{"anglescale":1,"pr":128,"pg":0,"pb":0,"nr":128,"ng":0,"nb":0,"pth":"#000099","nth":"#800000","thtype":1,"thmin":0,"thmax":8,"thpercentile":90,"height":50,"summeth":2,"smooth":5},"metadata":{}},{"type":"bigwig","name":"S90_170314_MB157_WO_H3K27ac_merged","url":"http://128.91.213.129/Breast_cancer_MB157_HCC1599/MergedH3K27ac/S90_170314_MB157_WO_H3K27ac_merged_noBlack_sorted.bw","mode":1,"qtc":{"anglescale":1,"pr":128,"pg":0,"pb":0,"nr":128,"ng":0,"nb":0,"pth":"#000099","nth":"#800000","thtype":1,"thmin":0,"thmax":8,"thpercentile":90,"height":50,"summeth":2,"smooth":5},"metadata":{}},{"type":"bigwig","name":"s01_170506_MB157_GSI_H3K4me1_set1_25792768_S1","url":"http://128.91.213.129/Breast_cancer_MB157_HCC1599/MB157_H3K4me1/s01_170506_MB157_GSI_H3K4me1_set1_25792768_S1.filt.srt.nodup.noBlack.bam.bw","mode":1,"qtc":{"anglescale":1,"pr":147,"pg":95,"pb":0,"nr":147,"ng":95,"nb":0,"pth":"#000099","nth":"#800000","thtype":0,"thmin":0,"thmax":10,"thpercentile":90,"height":40,"summeth":1},"metadata":{}},{"type":"bigwig","name":"s02_170506_MB157_GSI_H3K4me1_set2_25792768","url":"http://128.91.213.129/Breast_cancer_MB157_HCC1599/MB157_H3K4me1/s02_170506_MB157_GSI_H3K4me1_set2_25792768_S2.filt.srt.nodup.noBlack.bam.bw","mode":1,"qtc":{"anglescale":1,"pr":147,"pg":95,"pb":0,"nr":147,"ng":95,"nb":0,"pth":"#000099","nth":"#800000","thtype":0,"thmin":0,"thmax":10,"thpercentile":90,"height":40,"summeth":1},"metadata":{}},{"type":"bigwig","name":"s03_170506_MB157_WO_H3K4me1_set1_25792768","url":"http://128.91.213.129/Breast_cancer_MB157_HCC1599/MB157_H3K4me1/s03_170506_MB157_WO_H3K4me1_set1_25792768_S3.filt.srt.nodup.noBlack.bam.bw","mode":1,"qtc":{"anglescale":1,"pr":147,"pg":95,"pb":0,"nr":147,"ng":95,"nb":0,"pth":"#000099","nth":"#800000","thtype":0,"thmin":0,"thmax":10,"thpercentile":90,"height":40,"summeth":1},"metadata":{}},{"type":"bigwig","name":"s04_170506_MB157_WO_H3K4me1_set2_25792768","url":"http://128.91.213.129/Breast_cancer_MB157_HCC1599/MB157_H3K4me1/s04_170506_MB157_WO_H3K4me1_set2_25792768_S4.filt.srt.nodup.noBlack.bam.bw","mode":1,"qtc":{"anglescale":1,"pr":147,"pg":95,"pb":0,"nr":147,"ng":95,"nb":0,"pth":"#000099","nth":"#800000","thtype":0,"thmin":0,"thmax":10,"thpercentile":90,"height":40,"summeth":1},"metadata":{}},{"type":"bigwig","name":"s09_170506_MB157_GSI_H3K27me3_set1_25792768","url":"http://128.91.213.129/Breast_cancer_MB157_HCC1599/MB157_H3K27me3/s09_170506_MB157_GSI_H3K27me3_set1_25792768_S9.filt.srt.nodup.noBlack.bam.bw","mode":1,"qtc":{"anglescale":1,"pr":75,"pg":0,"pb":130,"nr":255,"ng":0,"nb":0,"pth":"#000099","nth":"#800000","thtype":0,"thmin":0,"thmax":10,"thpercentile":90,"height":40,"summeth":1},"metadata":{}},{"type":"bigwig","name":"s10_170506_MB157_GSI_H3K27me3_set2_25792768","url":"http://128.91.213.129/Breast_cancer_MB157_HCC1599/MB157_H3K27me3/s10_170506_MB157_GSI_H3K27me3_set2_25792768_S10.filt.srt.nodup.noBlack.bam.bw","mode":1,"qtc":{"anglescale":1,"pr":75,"pg":0,"pb":130,"nr":255,"ng":0,"nb":0,"pth":"#000099","nth":"#800000","thtype":0,"thmin":0,"thmax":10,"thpercentile":90,"height":40,"summeth":1},"metadata":{}},{"type":"bigwig","name":"s11_170506_MB157_WO_H3K27me3_set1_25792768","url":"http://128.91.213.129/Breast_cancer_MB157_HCC1599/MB157_H3K27me3/s11_170506_MB157_WO_H3K27me3_set1_25792768_S11.filt.srt.nodup.noBlack.bam.bw","mode":1,"qtc":{"anglescale":1,"pr":75,"pg":0,"pb":130,"nr":255,"ng":0,"nb":0,"pth":"#000099","nth":"#800000","thtype":0,"thmin":0,"thmax":10,"thpercentile":90,"height":40,"summeth":1},"metadata":{}},{"type":"bigwig","name":"s12_170506_MB157_WO_H3K27me3_set2_25792768","url":"http://128.91.213.129/Breast_cancer_MB157_HCC1599/MB157_H3K27me3/s12_170506_MB157_WO_H3K27me3_set2_25792768_S12.filt.srt.nodup.noBlack.bam.bw","mode":1,"qtc":{"anglescale":1,"pr":75,"pg":0,"pb":130,"nr":255,"ng":0,"nb":0,"pth":"#000099","nth":"#800000","thtype":0,"thmin":0,"thmax":10,"thpercentile":90,"height":40,"summeth":1},"metadata":{}},{"type":"bigwig","name":"S01_170128_MB157_GSI_RNAseq","url":"http://128.91.213.129/Breast_cancer_MB157_HCC1599/MB157_RNAseq_total/S01_170128_MB157_GSI_RNAseq_22614595_R1_NJ_norm.bw","mode":1,"qtc":{"anglescale":1,"pr":0,"pg":128,"pb":0,"nr":0,"ng":128,"nb":0,"pth":"rgb(0, 128, 0)","nth":"rgb(0, 128, 0)","thtype":1,"thmin":0,"thmax":50,"thpercentile":90,"height":50,"summeth":2},"metadata":{}},{"type":"bigwig","name":"S02_170128_MB157_GSI_RNAseq","url":"http://128.91.213.129/Breast_cancer_MB157_HCC1599/MB157_RNAseq_total/S02_170128_MB157_GSI_RNAseq_22614595_R1_NJ_norm.bw","mode":1,"qtc":{"anglescale":1,"pr":0,"pg":128,"pb":0,"nr":0,"ng":128,"nb":0,"pth":"rgb(0, 128, 0)","nth":"rgb(0, 128, 0)","thtype":1,"thmin":0,"thmax":50,"thpercentile":90,"height":50,"summeth":2},"metadata":{}},{"type":"bigwig","name":"S03_170128_MB157_GSI_RNAseq","url":"http://128.91.213.129/Breast_cancer_MB157_HCC1599/MB157_RNAseq_total/S03_170128_MB157_GSI_RNAseq_22614595_R1_NJ_norm.bw","mode":1,"qtc":{"anglescale":1,"pr":0,"pg":128,"pb":0,"nr":0,"ng":128,"nb":0,"pth":"rgb(0, 128, 0)","nth":"rgb(0, 128, 0)","thtype":1,"thmin":0,"thmax":50,"thpercentile":90,"height":50,"summeth":2},"metadata":{}},{"type":"bigwig","name":"S04_170128_MB157_WO_RNAseq","url":"http://128.91.213.129/Breast_cancer_MB157_HCC1599/MB157_RNAseq_total/S04_170128_MB157_WO_RNAseq_22614595_R1_NJ_norm.bw","mode":1,"qtc":{"anglescale":1,"pr":0,"pg":128,"pb":0,"nr":0,"ng":128,"nb":0,"pth":"rgb(0, 128, 0)","nth":"rgb(0, 128, 0)","thtype":1,"thmin":0,"thmax":50,"thpercentile":90,"height":50,"summeth":2},"metadata":{}},{"type":"bigwig","name":"S05_170128_MB157_WO_RNAseq","url":"http://128.91.213.129/Breast_cancer_MB157_HCC1599/MB157_RNAseq_total/S05_170128_MB157_WO_RNAseq_22614595_R1_NJ_norm.bw","mode":1,"qtc":{"anglescale":1,"pr":0,"pg":128,"pb":0,"nr":0,"ng":128,"nb":0,"pth":"rgb(0, 128, 0)","nth":"rgb(0, 128, 0)","thtype":1,"thmin":0,"thmax":50,"thpercentile":90,"height":50,"summeth":2},"metadata":{}},{"type":"bigwig","name":"S06_170128_MB157_WO_RNAseq","url":"http://128.91.213.129/Breast_cancer_MB157_HCC1599/MB157_RNAseq_total/S06_170128_MB157_WO_RNAseq_22614595_R1_NJ_norm.bw","mode":1,"qtc":{"anglescale":1,"pr":0,"pg":128,"pb":0,"nr":0,"ng":128,"nb":0,"pth":"rgb(0, 128, 0)","nth":"rgb(0, 128, 0)","thtype":1,"thmin":0,"thmax":50,"thpercentile":90,"height":50,"summeth":2},"metadata":{}},{"type":"bed","name":"S90_170314_MB157_WO_H3K27ac_merged_noBlack_sorted-MACS2-FDR_1e-5-SHIFT_99_peaks.bed","url":"http://epigenomegateway.wustl.edu/browser/t/1685575282.txt.gz","mode":3,"qtc":{"anglescale":1,"pr":255,"pg":0,"pb":0,"nr":0,"ng":0,"nb":230,"pth":"#800000","nth":"#000099","thtype":0,"thmin":0,"thmax":10,"thpercentile":95,"height":50,"summeth":1,"textcolor":"#000000","fontsize":"8pt","fontfamily":"sans-serif","fontbold":false,"bedcolor":"#336666"},"metadata":{}},{"type":"interaction","name":"s01_170610_MB157_H3K27ac_28318291_mango_VI_SC_DE_FDR_0.05","url":"http://128.91.213.129/Breast_cancer_MB157_HCC1599/170610_MB157_H3K27ac_HiChIP/s01_170610_MB157_H3K27ac_28318291_mango_VI_SC_DE_FDR_0.05_washu.bed.gz","mode":4,"qtc":{"anglescale":1,"textcolor":"#000000","thtype":0,"fontsize":"8pt","fontfamily":"sans-serif","fontbold":false,"pr":184,"pg":0,"pb":138,"nr":0,"ng":99,"nb":133,"pcolorscore":59218,"ncolorscore":0,"pfilterscore":10000,"nfilterscore":-2,"height":50},"metadata":{}},{"type":"interaction","name":"H3K27ac_MACS2_1E-3_TAD_1E-2","url":"http://128.91.213.129/Breast_cancer_MB157_HCC1599/170610_MB157_H3K27ac_HiChIP/s01_170610_MB157_H3K27ac_28318291_MACS2_1E-3_TAD_1E-2.bed.gz","mode":4,"qtc":{"anglescale":1,"textcolor":"#000000","thtype":0,"fontsize":"8pt","fontfamily":"sans-serif","fontbold":false,"pr":184,"pg":0,"pb":138,"nr":0,"ng":99,"nb":133,"pcolorscore":387,"ncolorscore":0,"pfilterscore":2,"nfilterscore":-2,"height":50},"metadata":{}},{"type":"interaction","name":"H3K27ac_MACS2_1E-4_TAD_0.05","url":"http://128.91.213.129/Breast_cancer_MB157_HCC1599/170610_MB157_H3K27ac_HiChIP/s01_170610_MB157_H3K27ac_28318291_mango_MACS2_1E-4_TAD_0.05.bed.gz","mode":4,"qtc":{"anglescale":1,"textcolor":"#000000","thtype":0,"fontsize":"8pt","fontfamily":"sans-serif","fontbold":false,"pr":184,"pg":0,"pb":138,"nr":0,"ng":99,"nb":133,"pcolorscore":617,"ncolorscore":0,"pfilterscore":2,"nfilterscore":-2,"height":50},"metadata":{}},{"type":"interaction","name":"H3K27ac_MACS2_1E-5_TAD_0.05","url":"http://128.91.213.129/Breast_cancer_MB157_HCC1599/170610_MB157_H3K27ac_HiChIP/s01_170610_MB157_H3K27ac_28318291_mango_MACS2_1E-5_TAD_0.05.bed.gz","mode":4,"qtc":{"anglescale":1,"textcolor":"#000000","thtype":0,"fontsize":"8pt","fontfamily":"sans-serif","fontbold":false,"pr":184,"pg":0,"pb":138,"nr":0,"ng":99,"nb":133,"pcolorscore":579,"ncolorscore":0,"pfilterscore":2,"nfilterscore":-2,"height":50},"metadata":{}},{"type":"native_track","list":[{"name":"refGene","mode":3,"qtc":{"anglescale":1,"pr":255,"pg":0,"pb":0,"nr":0,"ng":0,"nb":230,"pth":"#800000","nth":"#000099","thtype":0,"thmin":0,"thmax":10,"thpercentile":95,"height":50,"summeth":1,"textcolor":"#000000","fontsize":"8pt","fontfamily":"sans-serif","fontbold":false,"bedcolor":"#002EB8"},"metadata":{},"details":{"source":"UCSC Genome Browser","download date":"Jan 1, 2012"}},{"name":"gencodeV19","mode":3,"qtc":{"anglescale":1,"pr":255,"pg":0,"pb":0,"nr":0,"ng":0,"nb":230,"pth":"#800000","nth":"#000099","thtype":0,"thmin":0,"thmax":10,"thpercentile":95,"height":50,"summeth":1,"textcolor":"#000000","fontsize":"8pt","fontfamily":"sans-serif","fontbold":false,"bedcolor":"#336666"},"metadata":{},"categories":{"1":["coding","rgb(0,60,179)"],"2":["non-coding","rgb(0,128,0)"],"3":["pseudogene","rgb(230,0,172)"],"4":["problem","rgb(255,0,0)"],"5":["polyA","rgb(0,0,51)"],"-1":["no information","transparent"]}},{"name":"rmsk_all","mode":7,"qtc":{"anglescale":1,"pr":255,"pg":0,"pb":0,"nr":0,"ng":0,"nb":230,"pth":"#800000","nth":"#000099","thtype":0,"thmin":0,"thmax":10,"thpercentile":95,"height":35,"summeth":1,"textcolor":"#000000","fontsize":"8pt","fontfamily":"sans-serif","fontbold":false,"bedcolor":"#336666"},"showscoreidx":2,"scorenamelst":["Smith-Waterman score","SW score normalized by length","1-divergence%"],"scorescalelst":[{"type":0},{"type":0},{"type":0}],"metadata":{},"categories":{"1":["SINE - short interspersed nuclear elements","#cc0000"],"2":["LINE - long interspersed nuclear element","#FF6600"],"3":["LTR - long terminal repeat element","#006600"],"4":["DNA transposon","#4A72E8"],"5":["Simple repeat, micro-satellite","#AB833B"],"6":["Satellite repeat","#660000"],"7":["Low complexity repeat","#663333"],"8":["RNA repeat","#cc33ff"],"9":["Other repeats","#488E8E"],"10":["Unknown","#5C5C5C"],"-1":["no information","transparent"]}}]},{"type":"bed","name":"S90_170314_MB157_WO_H3K27ac_merged_noBlack_sorted-MACS2-FDR_1e-5-SHIFT_99_summits.bed","url":"http://epigenomegateway.wustl.edu/browser/t/1963094133.txt.gz","mode":"hide","qtc":{},"metadata":{}},{"type":"metadata","vocabulary_set":{"md1":"http://vizhub.wustl.edu/metadata/human/Samples","md2":"http://vizhub.wustl.edu/metadata/human/Donor","md3":"http://vizhub.wustl.edu/metadata/Experimental_assays","md4":"http://vizhub.wustl.edu/metadata/Institutions"},"show_terms":{"md1":["Sample"],"md3":["Assay"]}},{"type":"coordinate_override","coord":"chr8,127955445,chr8,128776802"}]