[{"type":"categorical","name":"E115 Dnd41 TCell Leukemia Cell Line ImputedHMM","url":"http://egg2.wustl.edu/roadmap/data/byFileType/chromhmmSegmentations/ChmmModels/imputed12marks/jointModel/final/E115_25_imputed12marks_stateno.bed.gz","mode":1,"qtc":{"anglescale":1,"height":15},"metadata":{"md1":["12","310","2113"],"md2":["14044"],"md4":["27004"]},"categories":{"1":["Active TSS","#ff0000"],"2":["Promoter Upstream TSS","#ff4500"],"3":["Promoter Downstream TSS with DNase","#ff4500"],"4":["Promoter Downstream TSS","#ff4500"],"5":["Transcription 5'","#008000"],"6":["Transcription","#008000"],"7":["Transcription 3'","#008000"],"8":["Weak transcription","#009600"],"9":["Transcription Regulatory","#c2e105"],"10":["Transcription 5' Enhancer","#c2e105"],"11":["Transcription 3' Enhancer","#c2e105"],"12":["Transcription Weak Enhancer","#c2e105"],"13":["Active Enhancer 1","#ffc34d"],"14":["Active Enhancer 2","#ffc34d"],"15":["Active Enhancer Flank","#ffc34d"],"16":["Weak Enhancer 1","#ffff00"],"17":["Weak Enhancer 2","#ffff00"],"18":["Enhancer Acetylation Only","#ffff00"],"19":["DNase only","#ffff66"],"20":["ZNF genes & repeats","#66cdaa"],"21":["Heterochromatin","#8a91d0"],"22":["Poised Promoter","#e6b8b7"],"23":["Bivalent Promoter","#7030a0"],"24":["Repressed PolyComb","#808080"],"25":["Quiescent/Low","#ffffff"],"-1":["no information","transparent"]}},{"type":"categorical","name":"E115 Dnd41 TCell Leukemia Cell Line AuxiliaryHMM","url":"http://egg2.wustl.edu/roadmap/data/byFileType/chromhmmSegmentations/ChmmModels/core_K27ac/jointModel/final/E115_18_core_K27ac_stateno.bed.gz","mode":1,"qtc":{"anglescale":1,"height":15},"metadata":{"md1":["11","39","2113"],"md2":["14044"],"md4":["27004"]},"categories":{"1":["Active TSS","#ff0000"],"2":["Flanking TSS","#ff4500"],"3":["Flanking TSS Upstream","#ff4500"],"4":["Flanking TSS Downstream","#ff4500"],"5":["Strong transcription","#008000"],"6":["Weak transcription","#006400"],"7":["Genic enhancer1","#c2e105"],"8":["Genic enhancer2","#c2e105"],"9":["Active Enhancer1","#ffc34d"],"10":["Active Enhancer2","#ffc34d"],"11":["Weak Enhancer","#ffff00"],"12":["ZNF genes & repeats","#66cdaa"],"13":["Heterochromatin","#8a91d0"],"14":["Bivalent/Poised TSS","#cd5c5c"],"15":["Bivalent Enhancer","#bdb76b"],"16":["Repressed PolyComb","#808080"],"17":["Weak Repressed PolyComb","#c0c0c0"],"18":["Quiescent/Low","#ffffff"],"-1":["no information","transparent"]}},{"type":"categorical","name":"E115 Dnd41 TCell Leukemia Cell Line PrimaryHMM","url":"http://egg2.wustl.edu/roadmap/data/byFileType/chromhmmSegmentations/ChmmModels/coreMarks/jointModel/final/E115_15_coreMarks_stateno.bed.gz","mode":1,"qtc":{"anglescale":1,"height":15},"metadata":{"md1":["11","38","2113"],"md2":["14044"],"md4":["27004"]},"categories":{"1":["Active TSS","#ff0000"],"2":["Flanking Active TSS","#ff4500"],"3":["Transcr at gene 5' and 3'","#32cd32"],"4":["Strong transcription","#008000"],"5":["Weak transcription","#006400"],"6":["Genic enhancers","#c2e105"],"7":["Enhancers","#ffff00"],"8":["ZNF genes & repeats","#66cdaa"],"9":["Heterochromatin","#8a91d0"],"10":["Bivalent/Poised TSS","#cd5c5c"],"11":["Flanking Bivalent TSS/Enh","#e9967a"],"12":["Bivalent Enhancer","#bdb76b"],"13":["Repressed PolyComb","#808080"],"14":["Weak Repressed PolyComb","#c0c0c0"],"15":["Quiescent/Low","#ffffff"],"-1":["no information","transparent"]}},{"type":"categorical","name":"E047 Primary T CD8+ naive cells from peripheral blood ImputedHMM","url":"http://egg2.wustl.edu/roadmap/data/byFileType/chromhmmSegmentations/ChmmModels/imputed12marks/jointModel/final/E047_25_imputed12marks_stateno.bed.gz","mode":1,"qtc":{"anglescale":1,"height":15},"metadata":{"md1":["12","247","310"],"md2":["13021"],"md4":["27004"]},"categories":{"1":["Active TSS","#ff0000"],"2":["Promoter Upstream TSS","#ff4500"],"3":["Promoter Downstream TSS with DNase","#ff4500"],"4":["Promoter Downstream TSS","#ff4500"],"5":["Transcription 5'","#008000"],"6":["Transcription","#008000"],"7":["Transcription 3'","#008000"],"8":["Weak transcription","#009600"],"9":["Transcription Regulatory","#c2e105"],"10":["Transcription 5' Enhancer","#c2e105"],"11":["Transcription 3' Enhancer","#c2e105"],"12":["Transcription Weak Enhancer","#c2e105"],"13":["Active Enhancer 1","#ffc34d"],"14":["Active Enhancer 2","#ffc34d"],"15":["Active Enhancer Flank","#ffc34d"],"16":["Weak Enhancer 1","#ffff00"],"17":["Weak Enhancer 2","#ffff00"],"18":["Enhancer Acetylation Only","#ffff00"],"19":["DNase only","#ffff66"],"20":["ZNF genes & repeats","#66cdaa"],"21":["Heterochromatin","#8a91d0"],"22":["Poised Promoter","#e6b8b7"],"23":["Bivalent Promoter","#7030a0"],"24":["Repressed PolyComb","#808080"],"25":["Quiescent/Low","#ffffff"],"-1":["no information","transparent"]}},{"type":"categorical","name":"E047 Primary T CD8+ naive cells from peripheral blood PrimaryHMM","url":"http://egg2.wustl.edu/roadmap/data/byFileType/chromhmmSegmentations/ChmmModels/coreMarks/jointModel/final/E047_15_coreMarks_stateno.bed.gz","mode":1,"qtc":{"anglescale":1,"height":15},"metadata":{"md1":["11","38","247"],"md2":["13021"],"md4":["27004"]},"categories":{"1":["Active TSS","#ff0000"],"2":["Flanking Active TSS","#ff4500"],"3":["Transcr at gene 5' and 3'","#32cd32"],"4":["Strong transcription","#008000"],"5":["Weak transcription","#006400"],"6":["Genic enhancers","#c2e105"],"7":["Enhancers","#ffff00"],"8":["ZNF genes & repeats","#66cdaa"],"9":["Heterochromatin","#8a91d0"],"10":["Bivalent/Poised TSS","#cd5c5c"],"11":["Flanking Bivalent TSS/Enh","#e9967a"],"12":["Bivalent Enhancer","#bdb76b"],"13":["Repressed PolyComb","#808080"],"14":["Weak Repressed PolyComb","#c0c0c0"],"15":["Quiescent/Low","#ffffff"],"-1":["no information","transparent"]}},{"type":"categorical","name":"E047 Primary T CD8+ naive cells from peripheral blood AuxiliaryHMM","url":"http://egg2.wustl.edu/roadmap/data/byFileType/chromhmmSegmentations/ChmmModels/core_K27ac/jointModel/final/E047_18_core_K27ac_stateno.bed.gz","mode":1,"qtc":{"anglescale":1,"height":15},"metadata":{"md1":["11","39","247"],"md2":["13021"],"md4":["27004"]},"categories":{"1":["Active TSS","#ff0000"],"2":["Flanking TSS","#ff4500"],"3":["Flanking TSS Upstream","#ff4500"],"4":["Flanking TSS Downstream","#ff4500"],"5":["Strong transcription","#008000"],"6":["Weak transcription","#006400"],"7":["Genic enhancer1","#c2e105"],"8":["Genic enhancer2","#c2e105"],"9":["Active Enhancer1","#ffc34d"],"10":["Active Enhancer2","#ffc34d"],"11":["Weak Enhancer","#ffff00"],"12":["ZNF genes & repeats","#66cdaa"],"13":["Heterochromatin","#8a91d0"],"14":["Bivalent/Poised TSS","#cd5c5c"],"15":["Bivalent Enhancer","#bdb76b"],"16":["Repressed PolyComb","#808080"],"17":["Weak Repressed PolyComb","#c0c0c0"],"18":["Quiescent/Low","#ffffff"],"-1":["no information","transparent"]}},{"type":"native_track","list":[{"name":"rmsk_all","mode":7,"qtc":{"anglescale":1,"pr":0,"pg":77,"pb":0,"nr":0,"ng":0,"nb":230,"pth":"#800000","nth":"#000099","thtype":0,"thmin":0,"thmax":10,"thpercentile":95,"height":35,"summeth":1,"textcolor":"#000000","fontsize":"8pt","fontfamily":"sans-serif","fontbold":false,"bedcolor":"#336666"},"showscoreidx":2,"scorenamelst":["Smith-Waterman score","SW score normalized by length","1-divergence%"],"scorescalelst":[{"type":0},{"type":0},{"type":0}],"metadata":{},"categories":{"1":["SINE - short interspersed nuclear elements","#cc0000"],"2":["LINE - long interspersed nuclear element","#FF6600"],"3":["LTR - long terminal repeat element","#006600"],"4":["DNA transposon","#4A72E8"],"5":["Simple repeat, micro-satellite","#AB833B"],"6":["Satellite repeat","#660000"],"7":["Low complexity repeat","#663333"],"8":["RNA repeat","#cc33ff"],"9":["Other repeats","#488E8E"],"10":["Unknown","#5C5C5C"],"-1":["no information","transparent"]}},{"name":"refGene","mode":3,"qtc":{"anglescale":1,"pr":0,"pg":77,"pb":0,"nr":0,"ng":0,"nb":230,"pth":"#800000","nth":"#000099","thtype":0,"thmin":0,"thmax":10,"thpercentile":95,"height":50,"summeth":1,"textcolor":"#000000","fontsize":"8pt","fontfamily":"sans-serif","fontbold":false,"bedcolor":"#002EB8"},"metadata":{},"details":{"source":"UCSC Genome Browser","download date":"Jan 1, 2012"}}]},{"type":"metadata","vocabulary_set":{"md1":{"terms":{"11":["Real"],"12":["Imputed"],"21":["E001"],"22":["E002"],"23":["E003"],"24":["E004"],"25":["E005"],"26":["E006"],"27":["E007"],"28":["E008"],"29":["E009"],"31":["Alignment"],"32":["Signal"],"33":["macs2signal_pval"],"34":["macs2signal_foldChange"],"35":["narrowPeak"],"36":["broadPeak"],"37":["gappedPeak"],"38":["PrimaryHMM"],"39":["AuxiliaryHMM"],"210":["E010"],"211":["E011"],"212":["E012"],"213":["E013"],"214":["E014"],"215":["E015"],"216":["E016"],"217":["E017"],"218":["E018"],"219":["E019"],"220":["E020"],"221":["E021"],"222":["E022"],"223":["E023"],"224":["E024"],"225":["E025"],"226":["E026"],"227":["E027"],"228":["E028"],"229":["E029"],"230":["E030"],"231":["E031"],"232":["E032"],"233":["E033"],"234":["E034"],"235":["E035"],"236":["E036"],"237":["E037"],"238":["E038"],"239":["E039"],"240":["E040"],"241":["E041"],"242":["E042"],"243":["E043"],"244":["E044"],"245":["E045"],"246":["E046"],"247":["E047"],"248":["E048"],"249":["E049"],"250":["E050"],"251":["E051"],"252":["E052"],"253":["E053"],"254":["E054"],"255":["E055"],"256":["E056"],"257":["E057"],"258":["E058"],"259":["E059"],"260":["E061"],"261":["E062"],"262":["E063"],"263":["E065"],"264":["E066"],"265":["E067"],"266":["E068"],"267":["E069"],"268":["E070"],"269":["E071"],"270":["E072"],"271":["E073"],"272":["E074"],"273":["E075"],"274":["E076"],"275":["E077"],"276":["E078"],"277":["E079"],"278":["E080"],"279":["E081"],"280":["E082"],"281":["E083"],"282":["E084"],"283":["E085"],"284":["E086"],"285":["E087"],"286":["E088"],"287":["E089"],"288":["E090"],"289":["E091"],"290":["E092"],"291":["E093"],"292":["E094"],"293":["E095"],"294":["E096"],"295":["E097"],"296":["E098"],"297":["E099"],"298":["E100"],"299":["E101"],"310":["ImputedHMM"],"2100":["E102"],"2101":["E103"],"2102":["E104"],"2103":["E105"],"2104":["E106"],"2105":["E107"],"2106":["E108"],"2107":["E109"],"2108":["E110"],"2109":["E111"],"2110":["E112"],"2111":["E113"],"2112":["E114"],"2113":["E115"],"2114":["E116"],"2115":["E117"],"2116":["E118"],"2117":["E119"],"2118":["E120"],"2119":["E121"],"2120":["E122"],"2121":["E123"],"2122":["E124"],"2123":["E125"],"2124":["E126"],"2125":["E127"],"2126":["E128"],"2127":["E129"]},"vocabulary":{"Type":["11","12"],"EID":["21","22","23","24","25","26","27","28","29","210","211","212","213","214","215","216","217","218","219","220","221","222","223","224","225","226","227","228","229","230","231","232","233","234","235","236","237","238","239","240","241","242","243","244","245","246","247","248","249","250","251","252","253","254","255","256","257","258","259","260","261","262","263","264","265","266","267","268","269","270","271","272","273","274","275","276","277","278","279","280","281","282","283","284","285","286","287","288","289","290","291","292","293","294","295","296","297","298","299","2100","2101","2102","2103","2104","2105","2106","2107","2108","2109","2110","2111","2112","2113","2114","2115","2116","2117","2118","2119","2120","2121","2122","2123","2124","2125","2126","2127"],"View":["31","32","33","34","35","36","37","38","39","310"]},"source":"http://vizhub.wustl.edu/public/hg19/roadmap_consolidated_02182015.json.md.hmm"},"md2":"http://vizhub.wustl.edu/metadata/human/Samples","md3":"http://vizhub.wustl.edu/metadata/human/Donor","md4":"http://vizhub.wustl.edu/metadata/Experimental_assays"},"show_terms":{"md2":["Sample"],"md4":["Assay"],"md1":["View","Type"]}},{"type":"coordinate_override","coord":"chr16,40950000,chr16,58949999"}]