[{"type":"BED","name":"Fimo hg19 Jaspar","url":"http://vizhub.wustl.edu/public/hg19/fimo_motif/fimo.hg19.jaspar_core-0.1.gz","mode":3,"qtc":{"anglescale":1,"pr":0,"pg":77,"pb":0,"nr":0,"ng":0,"nb":230,"pth":"#800000","nth":"#000099","thtype":0,"thmin":0,"thmax":10,"thpercentile":95,"height":50,"summeth":1,"textcolor":"#000000","fontsize":"8pt","fontfamily":"sans-serif","fontbold":false,"bedcolor":"#006600"}},{"type":"BED","name":"Fimo hg19 Transfac","url":"http://vizhub.wustl.edu/public/hg19/fimo_motif/fimo.hg19.transfac-0.1.gz","mode":3,"qtc":{"anglescale":1,"pr":0,"pg":77,"pb":0,"nr":0,"ng":0,"nb":230,"pth":"#800000","nth":"#000099","thtype":0,"thmin":0,"thmax":10,"thpercentile":95,"height":50,"summeth":1,"textcolor":"#000000","fontsize":"8pt","fontfamily":"sans-serif","fontbold":false,"bedcolor":"#006600"}},{"type":"bedGraph","name":"ChIP-Seq Input from IMR90 Cells","url":"http://egg.wustl.edu/d/hg19/GSM959044_1.gz","public":true,"mode":1,"qtc":{"anglescale":1,"pr":0,"pg":0,"pb":200,"nr":255,"ng":0,"nb":0,"pth":"#ffff00","nth":"#800000","thtype":0,"thmin":0,"thmax":10,"thpercentile":90,"height":71,"summeth":1},"annotation":["11310","22001","30002"],"details":{"sample alias":"IMR90-12","sample common name":"IMR90 Cell Line","molecule":"genomic DNA","disease":"None","biomaterial_provider":"ATCC","biomaterial_type":"Cell Line","line":"IMR90","lineage":"NA","batch":"12","differentiation_stage":"Fetal lung fibroblast","differentiation_method":"NA","passage":"NA","medium":"Minimum Essential Medium, Eagle with Earle's Balanced Salt Solution supplemented with 10% Fetal Bovine Serum (FBS), 1% Pen/Strep (penicillin, streptomycin), 1% GlutaMax (stable form of glutamine)","Sex":"Female","experiment_type":"ChIP-Seq Input","extraction_protocol":"See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf","extraction_protocol_type_of_sonicator":"Biorupter","extraction_protocol_sonication_cycles":"80","chip_protocol":"Input","chip_protocol_chromatin_amount":"500 micrograms","original_filename":"UCSD.IMR90.Input.AK106.bigWig"},"geolst":["GSM959044"]},{"type":"bedGraph","name":"H3K4me3 of IMR90 (fetal lung fibroblast)","url":"http://egg.wustl.edu/d/hg19/GSM521901.gz","public":true,"mode":1,"qtc":{"anglescale":1,"pr":0,"pg":117,"pb":0,"nr":255,"ng":0,"nb":0,"pth":"#ffff00","nth":"#800000","thtype":0,"thmin":0,"thmax":10,"thpercentile":90,"height":71,"summeth":1},"annotation":["11310","22009","30002"],"details":{"molecule":"genomic DNA"," disease":"None","biomaterial_provider":"ATCC","biomaterial_type":"Cell Line","line":"IMR90","lineage":"NA","batch":"4","differentiation_stage":"Fetal lung fibroblast","differentiation_method":"NA","passage":"NA","medium":"Minimum Essential Medium, Eagle with Earle's Balanced Salt Solution supplemented with 10% Fetal Bovine Serum (FBS), 1% Pen/Strep (penicillin, streptomycin), 1% GlutaMax (stable form of glutamine)","Sex":"Female","experiment_type":"Histone H3K4me3","extraction_protocol":"See","extraction_protocol_type_of_sonicator":"Bioruptor","extraction_protocol_sonication_cycles":"120","chip_protocol":"See","chip_protocol_chromatin_amount":"500 micrograms","chip_protocol_bead_type":"magnetic anti-rabbit","chip_protocol_bead_amount":"33,500,000","chip_protocol_antibody_amount":"5 micrograms","chip_antibody":"H3K4me3","chip_antibody_provider":"Active Motif","chip_antibody_catalog":"AM39159","chip_antibody_lot":"15808002","original_filename":"GSM521901_UCSD.IMR90.H3K4me3.SK03.bigWig","Embargo end date":"2010-12-22"},"geolst":["GSM521901"]},{"type":"bedGraph","name":"H3K4me3 of IMR90 (fetal lung fibroblast)","url":"http://egg.wustl.edu/d/hg19/GSM469970.gz","public":true,"mode":1,"qtc":{"anglescale":1,"pr":0,"pg":117,"pb":0,"nr":255,"ng":0,"nb":0,"pth":"#ffff00","nth":"#800000","thtype":0,"thmin":0,"thmax":10,"thpercentile":90,"height":71,"summeth":1},"annotation":["11310","22009","30002"],"details":{"molecule":"genomic DNA"," disease":"None","biomaterial_provider":"ATCC","biomaterial_type":"Cell Line","line":"IMR90","lineage":"NA","batch":"1","differentiation_stage":"Fetal lung fibroblast","differentiation_method":"NA","passage":"4","medium":"Minimum Essential Medium, Eagle with Earle's Balanced Salt Solution supplemented with 10% Fetal Bovine Serum (FBS), 1% Pen/Strep (penicillin, streptomycin), 1% GlutaMax (stable form of glutamine)","Sex":"Female","experiment_type":"Histone H3K4me3","extraction_protocol":"See","extraction_protocol_type_of_sonicator":"Branson Tip Sonicator","extraction_protocol_sonication_cycles":"30","chip_protocol":"See","chip_protocol_chromatin_amount":"500 micrograms","chip_protocol_bead_type":"magnetic anti-rabbit","chip_protocol_bead_amount":"33,500,000","chip_protocol_antibody_amount":"5 micrograms","chip_antibody":"H3K4me3","chip_antibody_provider":"Abcam","chip_antibody_catalog":"ab8580","chip_antibody_lot":"unknown","original_filename":"GSM469970_UCSD.IMR90.H3K4me3.LL221.bigWig","Embargo end date":"2010-10-07"},"geolst":["GSM469970"]},{"type":"bedGraph","name":"H3K4me1 of IMR90 (fetal lung fibroblast)","url":"http://egg.wustl.edu/d/hg19/GSM521897.gz","public":true,"mode":1,"qtc":{"anglescale":1,"pr":0,"pg":133,"pb":66,"nr":255,"ng":0,"nb":0,"pth":"#ffff00","nth":"#800000","thtype":0,"thmin":0,"thmax":10,"thpercentile":90,"height":71,"summeth":1},"annotation":["11310","22010","30002"],"details":{"molecule":"genomic DNA"," disease":"None","biomaterial_provider":"ATCC","biomaterial_type":"Cell Line","line":"IMR90","lineage":"NA","batch":"4","differentiation_stage":"Fetal lung fibroblast","differentiation_method":"NA","passage":"NA","medium":"Minimum Essential Medium, Eagle with Earle's Balanced Salt Solution supplemented with 10% Fetal Bovine Serum (FBS), 1% Pen/Strep (penicillin, streptomycin), 1% GlutaMax (stable form of glutamine)","Sex":"Female","experiment_type":"Histone H3K4me1","extraction_protocol":"See","extraction_protocol_type_of_sonicator":"Biorupter","extraction_protocol_sonication_cycles":"120","chip_protocol":"See","chip_protocol_chromatin_amount":"500 micrograms","chip_protocol_bead_type":"magnetic anti-rabbit","chip_protocol_bead_amount":"33,500,000","chip_protocol_antibody_amount":"5 micrograms","chip_antibody":"H3K4me1","chip_antibody_provider":"Abcam","chip_antibody_catalog":"ab8895","chip_antibody_lot":"535659","original_filename":"GSM521897_UCSD.IMR90.H3K4me1.SK04.bigWig","Embargo end date":"2010-12-22"},"geolst":["GSM521897"]},{"type":"bedGraph","name":"H3K4me1 of IMR90 (fetal lung fibroblast)","url":"http://egg.wustl.edu/d/hg19/GSM521895.gz","public":true,"mode":1,"qtc":{"anglescale":1,"pr":0,"pg":133,"pb":66,"nr":255,"ng":0,"nb":0,"pth":"#ffff00","nth":"#800000","thtype":0,"thmin":0,"thmax":10,"thpercentile":90,"height":71,"summeth":1},"annotation":["11310","22010","30002"],"details":{"molecule":"genomic DNA"," disease":"None","biomaterial_provider":"ATCC","biomaterial_type":"Cell Line","line":"IMR90","lineage":"NA","batch":"1","differentiation_stage":"Fetal lung fibroblast","differentiation_method":"NA","passage":"4","medium":"Minimum Essential Medium, Eagle with Earle's Balanced Salt Solution supplemented with 10% Fetal Bovine Serum (FBS), 1% Pen/Strep (penicillin, streptomycin), 1% GlutaMax (stable form of glutamine)","Sex":"Female","experiment_type":"Histone H3K4me1","extraction_protocol":"See","extraction_protocol_type_of_sonicator":"Branson Tip Sonicator","extraction_protocol_sonication_cycles":"30","chip_protocol":"See","chip_protocol_chromatin_amount":"500 micrograms","chip_protocol_bead_type":"magnetic anti-rabbit","chip_protocol_bead_amount":"33,500,000","chip_protocol_antibody_amount":"5 micrograms","chip_antibody":"H3K4me1","chip_antibody_provider":"Abcam","chip_antibody_catalog":"ab8895","chip_antibody_lot":"u535659","original_filename":"GSM521895_UCSD.IMR90.H3K4me1.LL222.bigWig","Embargo end date":"2010-12-22"},"geolst":["GSM521895"]},{"type":"bedGraph","name":"H3K9me3 of IMR90 (fetal lung fibroblast)","url":"http://egg.wustl.edu/d/hg19/GSM521913.gz","public":true,"mode":1,"qtc":{"anglescale":1,"pr":159,"pg":0,"pb":72,"nr":255,"ng":0,"nb":0,"pth":"#ffff00","nth":"#800000","thtype":0,"thmin":0,"thmax":10,"thpercentile":90,"height":71,"summeth":1},"annotation":["11310","22012","30002"],"details":{"molecule":"genomic DNA"," disease":"None","biomaterial_provider":"ATCC","biomaterial_type":"Cell Line","line":"IMR90","lineage":"NA","batch":"4","differentiation_stage":"Fetal lung fibroblast","differentiation_method":"NA","passage":"NA","medium":"Minimum Essential Medium, Eagle with Earle's Balanced Salt Solution supplemented with 10% Fetal Bovine Serum (FBS), 1% Pen/Strep (penicillin, streptomycin), 1% GlutaMax (stable form of glutamine)","Sex":"Female","experiment_type":"Histone H3K9me3","extraction_protocol":"See","extraction_protocol_type_of_sonicator":"Biorupter","extraction_protocol_sonication_cycles":"120","chip_protocol":"See","chip_protocol_chromatin_amount":"500 micrograms","chip_protocol_bead_type":"magnetic anti-rabbit","chip_protocol_bead_amount":"33,500,000","chip_protocol_antibody_amount":"5 micrograms","chip_antibody":"H3K9me3","chip_antibody_provider":"Abcam","chip_antibody_catalog":"Ab8896","chip_antibody_lot":"484099","original_filename":"GSM521913_UCSD.IMR90.H3K9me3.SK06.bigWig","Embargo end date":"2010-12-22"},"geolst":["GSM521913"]},{"type":"bedGraph","name":"H3K9me3 of IMR90 (fetal lung fibroblast)","url":"http://egg.wustl.edu/d/hg19/GSM469974.gz","public":true,"mode":1,"qtc":{"anglescale":1,"pr":159,"pg":0,"pb":72,"nr":255,"ng":0,"nb":0,"pth":"#ffff00","nth":"#800000","thtype":0,"thmin":0,"thmax":10,"thpercentile":90,"height":71,"summeth":1},"annotation":["11310","22012","30002"],"details":{"molecule":"genomic DNA"," disease":"None","biomaterial_provider":"ATCC","biomaterial_type":"Cell Line","line":"IMR90","lineage":"NA","batch":"1","differentiation_stage":"Fetal lung fibroblast","differentiation_method":"NA","passage":"4","medium":"Minimum Essential Medium, Eagle with Earle's Balanced Salt Solution supplemented with 10% Fetal Bovine Serum (FBS), 1% Pen/Strep (penicillin, streptomycin), 1% GlutaMax (stable form of glutamine)","Sex":"Female","experiment_type":"Histone H3K9me3","extraction_protocol":"See","extraction_protocol_type_of_sonicator":"Branson Tip Sonicator","extraction_protocol_sonication_cycles":"30","chip_protocol":"See","chip_protocol_chromatin_amount":"500 micrograms","chip_protocol_bead_type":"magnetic anti-rabbit","chip_protocol_bead_amount":"33,500,000","chip_protocol_antibody_amount":"5 micrograms","chip_antibody":"H3K9me3","chip_antibody_provider":"Abcam","chip_antibody_catalog":"ab8898","chip_antibody_lot":"484099","original_filename":"GSM469974_UCSD.IMR90.H3K9me3.LL224.bigWig","Embargo end date":"2010-10-07"},"geolst":["GSM469974"]},{"type":"bedGraph","name":"H3K27me3 of IMR90 (fetal lung fibroblast)","url":"http://egg.wustl.edu/d/hg19/GSM521889.gz","public":true,"mode":1,"qtc":{"anglescale":1,"pr":180,"pg":0,"pb":0,"nr":255,"ng":0,"nb":0,"pth":"#ffff00","nth":"#800000","thtype":0,"thmin":0,"thmax":10,"thpercentile":90,"height":71,"summeth":1},"annotation":["11310","22018","30002"],"details":{"molecule":"genomic DNA"," disease":"None","biomaterial_provider":"ATCC","biomaterial_type":"Cell Line","line":"IMR90","lineage":"NA","batch":"4","differentiation_stage":"Fetal lung fibroblast","differentiation_method":"NA","passage":"NA","medium":"Minimum Essential Medium, Eagle with Earle's Balanced Salt Solution supplemented with 10% Fetal Bovine Serum (FBS), 1% Pen/Strep (penicillin, streptomycin), 1% GlutaMax (stable form of glutamine)","Sex":"Female","experiment_type":"Histone H3K27me3","extraction_protocol":"See","extraction_protocol_type_of_sonicator":"Biorupter","extraction_protocol_sonication_cycles":"80","chip_protocol":"See","chip_protocol_chromatin_amount":"500 micrograms","chip_protocol_bead_type":"magnetic anti-rabbit","chip_protocol_bead_amount":"33,500,000","chip_protocol_antibody_amount":"5 micrograms","chip_antibody":"H3K27me3","chip_antibody_provider":"Millipore","chip_antibody_catalog":"07-449","chip_antibody_lot":"DAM1514011","original_filename":"GSM521889_UCSD.IMR90.H3K27me3.SK05.bigWig","Embargo end date":"2010-12-22"},"geolst":["GSM521889"]},{"type":"bedGraph","name":"H3K27me3 of IMR90 (fetal lung fibroblast)","url":"http://egg.wustl.edu/d/hg19/GSM469968.gz","public":true,"mode":1,"qtc":{"anglescale":1,"pr":180,"pg":0,"pb":0,"nr":255,"ng":0,"nb":0,"pth":"#ffff00","nth":"#800000","thtype":0,"thmin":0,"thmax":10,"thpercentile":90,"height":71,"summeth":1},"annotation":["11310","22018","30002"],"details":{"molecule":"genomic DNA"," disease":"None","biomaterial_provider":"ATCC","biomaterial_type":"Cell Line","line":"IMR90","lineage":"NA","batch":"1","differentiation_stage":"Fetal lung fibroblast","differentiation_method":"NA","passage":"4","medium":"Minimum Essential Medium, Eagle with Earle's Balanced Salt Solution supplemented with 10% Fetal Bovine Serum (FBS), 1% Pen/Strep (penicillin, streptomycin), 1% GlutaMax (stable form of glutamine)","Sex":"Female","experiment_type":"Histone H3K27me3","extraction_protocol":"See","extraction_protocol_type_of_sonicator":"Branson Tip Sonicator","extraction_protocol_sonication_cycles":"30","chip_protocol":"See","chip_protocol_chromatin_amount":"500 micrograms","chip_protocol_bead_type":"magnetic anti-rabbit","chip_protocol_bead_amount":"33,500,000","chip_protocol_antibody_amount":"5 micrograms","chip_antibody":"H3K27me3","chip_antibody_provider":"Upstate","chip_antibody_catalog":"07-449","chip_antibody_lot":"DAM1514011","original_filename":"GSM469968_UCSD.IMR90.H3K27me3.LL223.bigWig","Embargo end date":"2010-10-07"},"geolst":["GSM469968"]},{"type":"categorical","name":"E017 IMR90 chromatin state","url":"http://egg.wustl.edu/d/hg19/E017_15_coreMarks_dense.gz","public":true,"mode":1,"qtc":{"anglescale":1,"height":71},"annotation":["11310","27004","30002"],"categories":{"1":["Active_TSS","#ff0000"],"2":["Flanking_Active_TSS","#ff4500"],"3":["Transcr_at_gene_5_and_3primer","#32cd32"],"4":["Strong_transcription","#008000"],"5":["Weak_transcription","#006400"],"6":["Genic_enhancers","#c2e105"],"7":["Enhancers","#ffff00"],"8":["ZNF_genes&repeats","#66cdaa"],"9":["Heterochromatin","#8a91d0"],"10":["Bivalent/Poised_TSS","#cd5c5c"],"11":["Flanking_Bivalent_TSS/Enh","#e9967a"],"12":["Bivalent_Enhancer","#bdb76b"],"13":["Repressed_PolyComb","#808080"],"14":["Weak_Repressed_PolyComb","#c0c0c0"],"15":["Quiescent/Low","#ffffff"],"-1":["no information","transparent"]},"details":{"NEW EID":"E017","Epigenome Mnemonic":"LNG.IMR90","Epigenome name":"IMR90_Cell_Line","download_url":"http://www.broadinstitute.org/~anshul/projects/roadmap/segmentations/models/coreMarks/parallel/set2/final/E017_15_coreMarks_dense.bed.gz"}},{"type":"bigWig","name":"Stam HeLa-S3 CTCF 2","url":"http://egg.wustl.edu/d/hg19/GSM749739_1.bigWig","public":true,"mode":1,"qtc":{"anglescale":1,"pr":0,"pg":0,"pb":230,"nr":255,"ng":0,"nb":0,"pth":"#ffff00","nth":"#800000","thtype":0,"thmin":0,"thmax":10,"thpercentile":90,"height":71,"summeth":1},"annotation":["14001","24001","30004"],"details":{"cell":"HeLa-S3","cell organism":"Human","cell description":"cervical carcinoma","cell karyotype":"cancer","cell lineage":"ectoderm","cell sex":"F","antibody":"CTCF","antibody description":"rabbit polyclonal","antibody target description":"CTCF zinc finger transcription factor. A sequence specific DNA binding protein that functions as an insulator, blocking enhancer activity. It has also been suggested to block the spreading of chromatin structure in certain instances.","antibody vendor name":"Millipore","replicate":"2","original_filename":"GSM749739_hg19_wgEncodeUwTfbsHelas3CtcfStdRawRep2.bigWig"},"geolst":["GSM749739"]},{"type":"bigWig","name":"Stam HeLa-S3 CTCF 1","url":"http://egg.wustl.edu/d/hg19/GSM749729_1.bigWig","public":true,"mode":1,"qtc":{"anglescale":1,"pr":0,"pg":0,"pb":230,"nr":255,"ng":0,"nb":0,"pth":"#ffff00","nth":"#800000","thtype":0,"thmin":0,"thmax":10,"thpercentile":90,"height":71,"summeth":1},"annotation":["14001","24001","30004"],"details":{"cell":"HeLa-S3","cell organism":"Human","cell description":"cervical carcinoma","cell karyotype":"cancer","cell lineage":"ectoderm","cell sex":"F","antibody":"CTCF","antibody description":"rabbit polyclonal","antibody target description":"CTCF zinc finger transcription factor. A sequence specific DNA binding protein that functions as an insulator, blocking enhancer activity. It has also been suggested to block the spreading of chromatin structure in certain instances.","antibody vendor name":"Millipore","replicate":"1","original_filename":"GSM749729_hg19_wgEncodeUwTfbsHelas3CtcfStdRawRep1.bigWig"},"geolst":["GSM749729"]},{"type":"bigWig","name":"Bernstein HeLa-S3 CTCF","url":"http://egg.wustl.edu/d/hg19/GSM733785_1.bigWig","public":true,"mode":1,"qtc":{"anglescale":1,"pr":0,"pg":0,"pb":230,"nr":255,"ng":0,"nb":0,"pth":"#ffff00","nth":"#800000","thtype":0,"thmin":0,"thmax":10,"thpercentile":90,"height":71,"summeth":1},"annotation":["14001","24001","30003"],"details":{"cell":"HeLa-S3","cell organism":"Human","cell description":"cervical carcinoma","cell karyotype":"cancer","cell lineage":"ectoderm","cell sex":"F","antibody":"CTCF","antibody description":"rabbit polyclonal","antibody target description":"CTCF zinc finger transcription factor. A sequence specific DNA binding protein that functions as an insulator, blocking enhancer activity. It has also been suggested to block the spreading of chromatin structure in certain instances.","antibody vendor name":"Millipore","original_filename":"GSM733785_hg19_wgEncodeBroadHistoneHelas3CtcfStdSig.bigWig"},"geolst":["GSM733785"]},{"type":"bigWig","name":"UT-A ChipSeq HeLa-S3 CTCF","url":"http://egg.wustl.edu/d/hg19/GSM822285_1.bigWig","public":true,"mode":1,"qtc":{"anglescale":1,"pr":0,"pg":0,"pb":230,"nr":255,"ng":0,"nb":0,"pth":"#ffff00","nth":"#800000","thtype":0,"thmin":0,"thmax":10,"thpercentile":90,"height":71,"summeth":1},"annotation":["14001","24001","30009"],"details":{"lab":"UT-A","lab description":"Iyer - University of Texas at Austin","datatype":"ChipSeq","datatype description":"ChIP-Seq","cell":"HeLa-S3","cell organism":"human","cell description":"cervical carcinoma","cell karyotype":"cancer","cell sex":"F","antibody":"CTCF","antibody antibodydescription":"rabbit polyclonal","antibody targetdescription":"CTCF zinc finger transcription factor. A sequence specific DNA binding protein that functions as an insulator, blocking enhancer activity. It has also been suggested to block the spreading of chromatin structure in certain instances.","antibody vendorname":"Millipore","antibody vendorid":"07-729","controlid":"HeLa-S3/Input","labversion":"align_on_cluster_bwa.pl v 1","replicate":"1","replicate description":"tier 1","original_filename":"GSM822285_hg19_wgEncodeOpenChromChipHelas3CtcfBaseOverlapSignal.bigWig"},"geolst":["GSM822285"]},{"type":"interaction","name":"ENCODE GIS ChIA-PET HeLaS3 POL2","url":"http://egg.wustl.edu/d/hg19/wgEncodeGisChiaPetHelas3Pol2InteractionsRep1.gz","public":true,"mode":4,"qtc":{"anglescale":1,"pr":0,"pg":77,"pb":0,"nr":0,"ng":0,"nb":230,"pth":"#800000","nth":"#000099","thtype":0,"thmin":0,"thmax":10,"thpercentile":95,"height":10,"summeth":1,"textcolor":"#000000","fontsize":"8pt","fontfamily":"sans-serif","fontbold":false,"pcolor":"rgb(184,0,138)","ncolor":"rgb(0,99,133)","pcolorscore":0,"ncolorscore":0,"pfilterscore":0,"nfilterscore":0},"annotation":["14001","27001","30007"],"details":{"project":"wgEncode","grant":"Ruan","lab":"GIS-Ruan","composite":"wgEncodeGisChiaPet","dataType":"ChiaPet","view":"Interactions","cell":"HeLa-S3","antibody":"Pol2","replicate":"1","dataVersion":"ENCODE Mar 2012 Freeze","dccAccession":"wgEncodeEH001426","dateSubmitted":"2011-01-20","dateResubmitted":"2011-09-24","dateUnrestricted":"2011-10-20","subId":"4872","labExpId":"IHH025M_hg19","tableName":"wgEncodeGisChiaPetHelas3Pol2InteractionsRep1","type":"bed","md5sum":"56ca928080cfc8fbc6b909a3cbc17c88","size":"1.5M"}},{"type":"interaction","name":"gisChiaPet HeLa RNAPII pilot","url":"http://egg.wustl.edu/d/hg19/GSM832461.gz","public":true,"mode":4,"qtc":{"anglescale":1,"pr":0,"pg":77,"pb":0,"nr":0,"ng":0,"nb":230,"pth":"#800000","nth":"#000099","thtype":0,"thmin":0,"thmax":10,"thpercentile":95,"height":10,"summeth":1,"textcolor":"#000000","fontsize":"8pt","fontfamily":"sans-serif","fontbold":false,"pcolor":"rgb(184,0,138)","ncolor":"rgb(0,99,133)","pcolorscore":0,"ncolorscore":0,"pfilterscore":0,"nfilterscore":0},"annotation":["14001","27001","30007"],"details":{"Publication":"Extensive promoter-centered chromatin interactions provide a topological basis for transcription regulation","Journal":"Cell 148(1-2):84","Year":"2012","Institution":"Genome Institute of Singapore","PI":"Michael Snyder, Yijun Ruan","Assay":"ChIA-PET","Factor":"PolII","Sample":"HeLa cells"},"geolst":["GSM832461","GSE33664"]},{"type":"bigWig","name":"UT-A ChipSeq HeLa-S3 CTCF","url":"http://egg.wustl.edu/d/hg19/GSM822285_2.bigWig","public":true,"mode":1,"qtc":{"anglescale":1,"pr":0,"pg":0,"pb":230,"nr":255,"ng":0,"nb":0,"pth":"#ffff00","nth":"#800000","thtype":0,"thmin":0,"thmax":10,"thpercentile":90,"height":71,"summeth":1},"annotation":["14001","24001","30009"],"details":{"lab":"UT-A","lab description":"Iyer - University of Texas at Austin","datatype":"ChipSeq","datatype description":"ChIP-Seq","cell":"HeLa-S3","cell organism":"human","cell description":"cervical carcinoma","cell karyotype":"cancer","cell sex":"F","antibody":"CTCF","antibody antibodydescription":"rabbit polyclonal","antibody targetdescription":"CTCF zinc finger transcription factor. A sequence specific DNA binding protein that functions as an insulator, blocking enhancer activity. It has also been suggested to block the spreading of chromatin structure in certain instances.","antibody vendorname":"Millipore","antibody vendorid":"07-729","controlid":"HeLa-S3/Input","labversion":"align_on_cluster_bwa.pl v 1","replicate":"1","replicate description":"tier 1","original_filename":"GSM822285_hg19_wgEncodeOpenChromChipHelas3CtcfSig.bigWig"},"geolst":["GSM822285"]},{"type":"interaction","name":"ENCODE UMass 5C HeLa-S","url":"http://egg.wustl.edu/d/hg19/wgEncodeUmassDekker5CHelas3Pk.gz","public":true,"mode":4,"qtc":{"anglescale":1,"pr":0,"pg":77,"pb":0,"nr":0,"ng":0,"nb":230,"pth":"#800000","nth":"#000099","thtype":0,"thmin":0,"thmax":10,"thpercentile":95,"height":10,"summeth":1,"textcolor":"#000000","fontsize":"8pt","fontfamily":"sans-serif","fontbold":false,"pcolor":"rgb(184,0,138)","ncolor":"rgb(0,99,133)","pcolorscore":699,"ncolorscore":0,"pfilterscore":0,"nfilterscore":0},"annotation":["14001","27002","30024"],"details":{"project":"wgEncode","grant":"Dekker","lab":"UMass-Dekker","composite":"wgEncodeUmassDekker5C","dataType":"5C","view":"Peaks","cell":"HeLa-S3","dataVersion":"ENCODE Mar 2012 Freeze","dccAccession":"wgEncodeEH001667","dateSubmitted":"2011-01-25","dateResubmitted":"2012-02-07","dateUnrestricted":"2011-10-25","subId":"5451","region":"None","tableName":"wgEncodeUmassDekker5CHelas3Pk","type":"bed","md5sum":"b3e549a8a1dc7aaa1bc367da2d6d0910","size":"51K"}},{"type":"native_track","list":[{"name":"rmsk_ensemble","mode":1,"qtc":{"anglescale":1,"height":71},"categories":{"1":["SINE - short interspersed nuclear elements","#cc0000"],"2":["LINE - long interspersed nuclear element","#FF6600"],"3":["LTR - long terminal repeat element","#006600"],"4":["DNA transposon","#4A72E8"],"5":["Simple repeat, micro-satellite","#AB833B"],"6":["Satellite repeat","#660000"],"7":["Low complexity repeat","#663333"],"8":["RNA repeat","#cc33ff"],"9":["Other repeats","#488E8E"],"10":["Unknown","#5C5C5C"],"-1":["no information","transparent"]}},{"name":"refGene","mode":3,"qtc":{"anglescale":1,"pr":0,"pg":77,"pb":0,"nr":0,"ng":0,"nb":230,"pth":"#800000","nth":"#000099","thtype":0,"thmin":0,"thmax":10,"thpercentile":95,"height":50,"summeth":1,"textcolor":"rgb(0,0,0)","fontsize":"8pt","fontfamily":"sans-serif","fontbold":false,"bedcolor":"rgb(0,77,153)"}}]},{"type":"coordinate_override","coord":"chr21,34036432,chr21,34521533"},{"type":"native_metadata_terms","list":["Assay","Sample"]}]