[{"type":"categorical","name":"chromHMM of Muscle Satellite Cultured Cells","url":"http://egg.wustl.edu/d/hg19/E052_15_coreMarks_dense.gz","mode":1,"qtc":{"anglescale":1,"height":15},"metadata":{"md1":["13001"],"md3":["27004"],"md4":["30003"]},"categories":{"1":["Active TSS","#ff0000"],"2":["Flanking Active TSS","#ff4500"],"3":["Transcr at gene 5' and 3'","#32cd32"],"4":["Strong transcription","#008000"],"5":["Weak transcription","#006400"],"6":["Genic enhancers","#c2e105"],"7":["Enhancers","#ffff00"],"8":["ZNF genes & repeats","#66cdaa"],"9":["Heterochromatin","#8a91d0"],"10":["Bivalent/Poised TSS","#cd5c5c"],"11":["Flanking Bivalent TSS/Enh","#e9967a"],"12":["Bivalent Enhancer","#bdb76b"],"13":["Repressed PolyComb","#808080"],"14":["Weak Repressed PolyComb","#c0c0c0"],"15":["Quiescent/Low","#ffffff"],"-1":["no information","transparent"]}},{"type":"categorical","name":"chromHMM of Skeletal Muscle","url":"http://egg.wustl.edu/d/hg19/E107_15_coreMarks_dense.gz","mode":1,"qtc":{"anglescale":1,"height":15},"metadata":{"md1":["13003"],"md3":["27004"],"md4":["30003"]},"categories":{"1":["Active TSS","#ff0000"],"2":["Flanking Active TSS","#ff4500"],"3":["Transcr at gene 5' and 3'","#32cd32"],"4":["Strong transcription","#008000"],"5":["Weak transcription","#006400"],"6":["Genic enhancers","#c2e105"],"7":["Enhancers","#ffff00"],"8":["ZNF genes & repeats","#66cdaa"],"9":["Heterochromatin","#8a91d0"],"10":["Bivalent/Poised TSS","#cd5c5c"],"11":["Flanking Bivalent TSS/Enh","#e9967a"],"12":["Bivalent Enhancer","#bdb76b"],"13":["Repressed PolyComb","#808080"],"14":["Weak Repressed PolyComb","#c0c0c0"],"15":["Quiescent/Low","#ffffff"],"-1":["no information","transparent"]}},{"type":"categorical","name":"chromHMM of Skeletal Muscle","url":"http://egg.wustl.edu/d/hg19/E108_15_coreMarks_dense.gz","mode":1,"qtc":{"anglescale":1,"height":15},"metadata":{"md1":["13003"],"md3":["27004"],"md4":["30003"]},"categories":{"1":["Active TSS","#ff0000"],"2":["Flanking Active TSS","#ff4500"],"3":["Transcr at gene 5' and 3'","#32cd32"],"4":["Strong transcription","#008000"],"5":["Weak transcription","#006400"],"6":["Genic enhancers","#c2e105"],"7":["Enhancers","#ffff00"],"8":["ZNF genes & repeats","#66cdaa"],"9":["Heterochromatin","#8a91d0"],"10":["Bivalent/Poised TSS","#cd5c5c"],"11":["Flanking Bivalent TSS/Enh","#e9967a"],"12":["Bivalent Enhancer","#bdb76b"],"13":["Repressed PolyComb","#808080"],"14":["Weak Repressed PolyComb","#c0c0c0"],"15":["Quiescent/Low","#ffffff"],"-1":["no information","transparent"]}},{"type":"categorical","name":"chromHMM of HSMM","url":"http://egg.wustl.edu/d/hg19/E120_15_coreMarks_dense.gz","mode":1,"qtc":{"anglescale":1,"height":15},"metadata":{"md1":["13050"],"md3":["27004"],"md4":["30003"]},"categories":{"1":["Active TSS","#ff0000"],"2":["Flanking Active TSS","#ff4500"],"3":["Transcr at gene 5' and 3'","#32cd32"],"4":["Strong transcription","#008000"],"5":["Weak transcription","#006400"],"6":["Genic enhancers","#c2e105"],"7":["Enhancers","#ffff00"],"8":["ZNF genes & repeats","#66cdaa"],"9":["Heterochromatin","#8a91d0"],"10":["Bivalent/Poised TSS","#cd5c5c"],"11":["Flanking Bivalent TSS/Enh","#e9967a"],"12":["Bivalent Enhancer","#bdb76b"],"13":["Repressed PolyComb","#808080"],"14":["Weak Repressed PolyComb","#c0c0c0"],"15":["Quiescent/Low","#ffffff"],"-1":["no information","transparent"]}},{"type":"categorical","name":"chromHMM of HSMMtube","url":"http://egg.wustl.edu/d/hg19/E121_15_coreMarks_dense.gz","mode":1,"qtc":{"anglescale":1,"height":15},"metadata":{"md1":["13051"],"md3":["27004"],"md4":["30003"]},"categories":{"1":["Active TSS","#ff0000"],"2":["Flanking Active TSS","#ff4500"],"3":["Transcr at gene 5' and 3'","#32cd32"],"4":["Strong transcription","#008000"],"5":["Weak transcription","#006400"],"6":["Genic enhancers","#c2e105"],"7":["Enhancers","#ffff00"],"8":["ZNF genes & repeats","#66cdaa"],"9":["Heterochromatin","#8a91d0"],"10":["Bivalent/Poised TSS","#cd5c5c"],"11":["Flanking Bivalent TSS/Enh","#e9967a"],"12":["Bivalent Enhancer","#bdb76b"],"13":["Repressed PolyComb","#808080"],"14":["Weak Repressed PolyComb","#c0c0c0"],"15":["Quiescent/Low","#ffffff"],"-1":["no information","transparent"]}},{"type":"categorical","name":"chromHMM of Psoas_Muscle","url":"http://egg.wustl.edu/d/hg19/E100_15_coreMarks_dense.gz","mode":1,"qtc":{"anglescale":1,"height":15},"metadata":{"md1":["13218"],"md3":["27004"],"md4":["30002"]},"categories":{"1":["Active TSS","#ff0000"],"2":["Flanking Active TSS","#ff4500"],"3":["Transcr at gene 5' and 3'","#32cd32"],"4":["Strong transcription","#008000"],"5":["Weak transcription","#006400"],"6":["Genic enhancers","#c2e105"],"7":["Enhancers","#ffff00"],"8":["ZNF genes & repeats","#66cdaa"],"9":["Heterochromatin","#8a91d0"],"10":["Bivalent/Poised TSS","#cd5c5c"],"11":["Flanking Bivalent TSS/Enh","#e9967a"],"12":["Bivalent Enhancer","#bdb76b"],"13":["Repressed PolyComb","#808080"],"14":["Weak Repressed PolyComb","#c0c0c0"],"15":["Quiescent/Low","#ffffff"],"-1":["no information","transparent"]}},{"type":"bigwig","name":"DNase hypersensitivity of Psoas_Muscle","url":"http://egg.wustl.edu/d/hg19/GSM1027321_1.bigWig","mode":1,"qtc":{"anglescale":1,"pr":0,"pg":77,"pb":0,"nr":255,"ng":0,"nb":0,"pth":"rgb(0,53,0)","nth":"#800000","thtype":0,"thmin":0,"thmax":10,"thpercentile":90,"height":10,"summeth":1},"metadata":{"md1":["13218"],"md2":["40272"],"md3":["23001"],"md4":["30004"]},"geolst":["GSM1027321"]},{"combinestrands":true,"scalebarheight":true,"smoothwindow":11,"tracks":{"forward":{"CG":{"color":"rgb(100,139,216)","bg":"#d9d9d9","url":"http://vizhub.wustl.edu/public/hg19/RoadmapFinalMethylation/WGBS/E100.fm.f.bedGraph.gz"},"ReadDepth":{"color":"#525252","url":"http://vizhub.wustl.edu/public/hg19/RoadmapFinalMethylation/WGBS/E100.rc.f.bedGraph.gz"}},"reverse":{"CG":{"color":"rgb(100,139,216)","bg":"#d9d9d9","url":"http://vizhub.wustl.edu/public/hg19/RoadmapFinalMethylation/WGBS/E100.fm.r.bedGraph.gz"},"ReadDepth":{"color":"#525252","url":"http://vizhub.wustl.edu/public/hg19/RoadmapFinalMethylation/WGBS/E100.rc.r.bedGraph.gz"}}},"type":"methylc","name":"methylC-Seq of Psoas_Muscle","mode":1,"qtc":{"height":70,"smooth":11},"metadata":{"md1":["13218"],"md3":["21004"],"md4":["30002"]}},{"type":"bedgraph","name":"RRBS of Skeletal Muscle","url":"http://egg.wustl.edu/d/hg19/GSM621726.gz","mode":1,"qtc":{"anglescale":1,"pr":180,"pg":49,"pb":4,"nr":255,"ng":0,"nb":0,"pth":"rgb(125,34,2)","nth":"#800000","thtype":0,"thmin":0,"thmax":10,"thpercentile":90,"height":10,"summeth":1,"barplotbg":"#cccccc"},"metadata":{"md1":["13003"],"md2":["40045","60002","70004"],"md3":["21002"],"md4":["30003"]},"geolst":["GSM621726"]},{"type":"bedgraph","name":"RRBS of Skeletal Muscle","url":"http://egg.wustl.edu/d/hg19/GSM621727.gz","mode":1,"qtc":{"anglescale":1,"pr":180,"pg":49,"pb":4,"nr":255,"ng":0,"nb":0,"pth":"rgb(125,34,2)","nth":"#800000","thtype":0,"thmin":0,"thmax":10,"thpercentile":90,"height":10,"summeth":1,"barplotbg":"#cccccc"},"metadata":{"md1":["13003"],"md2":["40046","60001","70004"],"md3":["21002"],"md4":["30003"]},"geolst":["GSM621727"]},{"type":"interaction","name":"GIS-Ruan_ChiaPet_MCF-7_Pol2-R1","url":"http://epgg-test.wustl.edu/dli/long-range-mc/hg19/interaction_GSM970209_hg19_wgEncodeGisChiaPetMcf7Pol2InteractionsRep1.bed.txt.gz","mode":4,"qtc":{"anglescale":1,"textcolor":"#000000","thtype":0,"fontsize":"8pt","fontfamily":"sans-serif","fontbold":false,"pr":184,"pg":0,"pb":138,"nr":0,"ng":99,"nb":133,"pcolorscore":4,"ncolorscore":0,"pfilterscore":0,"nfilterscore":0,"height":10},"metadata":{"md1":["14028"],"md3":["27001"],"md4":["30018"]},"details":{"Publication":"NA","PMID":"NA"},"geolst":["GSE39495","GSM970209"]},{"type":"interaction","name":"GIS-Ruan_ChiaPet_MCF-7_Pol2-R2","url":"http://epgg-test.wustl.edu/dli/long-range-mc/hg19/interaction_GSM970209_hg19_wgEncodeGisChiaPetMcf7Pol2InteractionsRep2.bed.txt.gz","mode":4,"qtc":{"anglescale":1,"textcolor":"#000000","thtype":0,"fontsize":"8pt","fontfamily":"sans-serif","fontbold":false,"pr":184,"pg":0,"pb":138,"nr":0,"ng":99,"nb":133,"pcolorscore":6,"ncolorscore":0,"pfilterscore":0,"nfilterscore":0,"height":10},"metadata":{"md1":["14028"],"md3":["27001"],"md4":["30018"]},"details":{"Publication":"NA","PMID":"NA"},"geolst":["GSE39495","GSM970209"]},{"type":"interaction","name":"GIS-Ruan_ChiaPet_MCF-7_Pol2-R3","url":"http://epgg-test.wustl.edu/dli/long-range-mc/hg19/interaction_GSM970209_hg19_wgEncodeGisChiaPetMcf7Pol2InteractionsRep3.bed.txt.gz","mode":4,"qtc":{"anglescale":1,"textcolor":"#000000","thtype":0,"fontsize":"8pt","fontfamily":"sans-serif","fontbold":false,"pr":184,"pg":0,"pb":138,"nr":0,"ng":99,"nb":133,"pcolorscore":125,"ncolorscore":0,"pfilterscore":0,"nfilterscore":0,"height":10},"metadata":{"md1":["14028"],"md3":["27001"],"md4":["30018"]},"details":{"Publication":"NA","PMID":"NA"},"geolst":["GSE39495","GSM970209"]},{"type":"interaction","name":"GIS-Ruan_ChiaPet_MCF-7_Pol2-R4","url":"http://epgg-test.wustl.edu/dli/long-range-mc/hg19/interaction_GSM970209_hg19_wgEncodeGisChiaPetMcf7Pol2InteractionsRep4.bed.txt.gz","mode":4,"qtc":{"anglescale":1,"textcolor":"#000000","thtype":0,"fontsize":"8pt","fontfamily":"sans-serif","fontbold":false,"pr":184,"pg":0,"pb":138,"nr":0,"ng":99,"nb":133,"pcolorscore":128,"ncolorscore":0,"pfilterscore":0,"nfilterscore":0,"height":10},"metadata":{"md1":["14028"],"md3":["27001"],"md4":["30018"]},"details":{"Publication":"NA","PMID":"NA"},"geolst":["GSE39495","GSM970209"]},{"type":"interaction","name":"GIS-Ruan_ChiaPet_MCF-7_ERalpha_a-R1","url":"http://epgg-test.wustl.edu/dli/long-range-mc/hg19/interaction_GSM970212_hg19_wgEncodeGisChiaPetMcf7EraaInteractionsRep1.bed.txt.gz","mode":4,"qtc":{"anglescale":1,"textcolor":"#000000","thtype":0,"fontsize":"8pt","fontfamily":"sans-serif","fontbold":false,"pr":184,"pg":0,"pb":138,"nr":0,"ng":99,"nb":133,"pcolorscore":11,"ncolorscore":0,"pfilterscore":0,"nfilterscore":0,"height":10},"metadata":{"md1":["14028"],"md3":["27001"],"md4":["30018"]},"details":{"Publication":"NA","PMID":"NA"},"geolst":["GSE39495","GSM970212"]},{"type":"interaction","name":"GIS-Ruan_ChiaPet_MCF-7_ERalpha_a-R2","url":"http://epgg-test.wustl.edu/dli/long-range-mc/hg19/interaction_GSM970212_hg19_wgEncodeGisChiaPetMcf7EraaInteractionsRep2.bed.txt.gz","mode":4,"qtc":{"anglescale":1,"textcolor":"#000000","thtype":0,"fontsize":"8pt","fontfamily":"sans-serif","fontbold":false,"pr":184,"pg":0,"pb":138,"nr":0,"ng":99,"nb":133,"pcolorscore":14,"ncolorscore":0,"pfilterscore":0,"nfilterscore":0,"height":10},"metadata":{"md1":["14028"],"md3":["27001"],"md4":["30018"]},"details":{"Publication":"NA","PMID":"NA"},"geolst":["GSE39495","GSM970212"]},{"type":"interaction","name":"GIS-Ruan_ChiaPet_MCF-7_ERalpha_a-R3","url":"http://epgg-test.wustl.edu/dli/long-range-mc/hg19/interaction_GSM970212_hg19_wgEncodeGisChiaPetMcf7EraaInteractionsRep3.bed.txt.gz","mode":4,"qtc":{"anglescale":1,"textcolor":"#000000","thtype":0,"fontsize":"8pt","fontfamily":"sans-serif","fontbold":false,"pr":184,"pg":0,"pb":138,"nr":0,"ng":99,"nb":133,"pcolorscore":2,"ncolorscore":0,"pfilterscore":0,"nfilterscore":0,"height":10},"metadata":{"md1":["14028"],"md3":["27001"],"md4":["30018"]},"details":{"Publication":"NA","PMID":"NA"},"geolst":["GSE39495","GSM970212"]},{"type":"interaction","name":"GIS-Ruan_ChiaPet_MCF-7_CTCF-R1","url":"http://epgg-test.wustl.edu/dli/long-range-mc/hg19/interaction_GSM970215_hg19_wgEncodeGisChiaPetMcf7CtcfInteractionsRep1.bed.txt.gz","mode":4,"qtc":{"anglescale":1,"textcolor":"#000000","thtype":0,"fontsize":"8pt","fontfamily":"sans-serif","fontbold":false,"pr":184,"pg":0,"pb":138,"nr":0,"ng":99,"nb":133,"pcolorscore":3,"ncolorscore":0,"pfilterscore":0,"nfilterscore":0,"height":10},"metadata":{"md1":["14028"],"md3":["27001"],"md4":["30018"]},"details":{"Publication":"NA","PMID":"NA"},"geolst":["GSE39495","GSM970215"]},{"type":"interaction","name":"GIS-Ruan_ChiaPet_MCF-7_CTCF-R2","url":"http://epgg-test.wustl.edu/dli/long-range-mc/hg19/interaction_GSM970215_hg19_wgEncodeGisChiaPetMcf7CtcfInteractionsRep2.bed.txt.gz","mode":4,"qtc":{"anglescale":1,"textcolor":"#000000","thtype":0,"fontsize":"8pt","fontfamily":"sans-serif","fontbold":false,"pr":184,"pg":0,"pb":138,"nr":0,"ng":99,"nb":133,"pcolorscore":2,"ncolorscore":0,"pfilterscore":0,"nfilterscore":0,"height":10},"metadata":{"md1":["14028"],"md3":["27001"],"md4":["30018"]},"details":{"Publication":"NA","PMID":"NA"},"geolst":["GSE39495","GSM970215"]},{"type":"native_track","list":[{"name":"refGene","mode":3,"qtc":{"anglescale":1,"pr":255,"pg":0,"pb":0,"nr":0,"ng":0,"nb":230,"pth":"#800000","nth":"#000099","thtype":0,"thmin":0,"thmax":10,"thpercentile":95,"height":50,"summeth":1,"textcolor":"#000000","fontsize":"8pt","fontfamily":"sans-serif","fontbold":false,"bedcolor":"#002EB8"},"metadata":{},"details":{"source":"UCSC Genome Browser","download date":"Jan 1, 2012"}},{"name":"gencodeV19","mode":3,"qtc":{"anglescale":1,"pr":255,"pg":0,"pb":0,"nr":0,"ng":0,"nb":230,"pth":"#800000","nth":"#000099","thtype":0,"thmin":0,"thmax":10,"thpercentile":95,"height":50,"summeth":1,"textcolor":"#000000","fontsize":"8pt","fontfamily":"sans-serif","fontbold":false,"bedcolor":"#336666"},"metadata":{},"categories":{"1":["coding","rgb(0,60,179)"],"2":["non-coding","rgb(0,128,0)"],"3":["pseudogene","rgb(230,0,172)"],"4":["problem","rgb(255,0,0)"],"5":["polyA","rgb(0,0,51)"],"-1":["no information","transparent"]}}]},{"type":"metadata","vocabulary_set":{"md1":"http://vizhub.wustl.edu/metadata/human/Samples","md2":"http://vizhub.wustl.edu/metadata/human/Donor","md3":"http://vizhub.wustl.edu/metadata/Experimental_assays","md4":"http://vizhub.wustl.edu/metadata/Institutions"},"show_terms":{"md1":["Sample"],"md3":["Assay"]}},{"type":"coordinate_override","coord":"chr2,226300000,chr2,227700000"}]