[{"tracks":{"forward":{"CG":{"color":"rgb(100,139,216)","bg":"#d9d9d9","url":"http://wangftp.wustl.edu/~jjang/glioblastoma/BSseq/H838_Rep1_meth.sorted.bedGraph.gz"},"ReadDepth":{"color":"#525252","url":"http://wangftp.wustl.edu/~jjang/glioblastoma/BSseq/H838_Rep1_cov.sorted.bedGraph.gz"}}},"type":"methylc","name":"H838 Meth Rep1","mode":1,"qtc":{"height":50},"metadata":{"md1":["H838","BSseq"]}},{"type":"bigwig","name":"H838 Rep1 ATAC","url":"http://wangftp.wustl.edu/~jjang/glioblastoma/origATACseq/H838_combined_origATAC_Rep1.bigWig","mode":1,"qtc":{"anglescale":1,"pr":0,"pg":135,"pb":68,"nr":255,"ng":0,"nb":0,"pth":"rgb(0,94,47)","nth":"#800000","thtype":0,"thmin":0,"thmax":10,"thpercentile":90,"height":50,"summeth":1},"metadata":{"md1":["H838","ATAC"]}},{"type":"bedgraph","name":"H838 Rep1 q0.01 MACS","url":"http://wangftp.wustl.edu/~jjang/glioblastoma/origATACseq/H838_Rep1_q0.01_forbrowser.sorted.bed.gz","mode":1,"qtc":{"anglescale":1,"pr":116,"pg":214,"pb":0,"nr":255,"ng":0,"nb":0,"pth":"rgb(81,149,0)","nth":"#800000","thtype":1,"thmin":0,"thmax":1,"thpercentile":90,"height":20,"summeth":1},"metadata":{"md1":["H838","MACS"]}},{"type":"bedgraph","name":"H838 Rep1 BROAD MACS","url":"http://wangftp.wustl.edu/~jjang/glioblastoma/origATACseq/H838_Rep1_q0.01_peaks.broadPeak.sorted.bed.gz","mode":1,"qtc":{"anglescale":1,"pr":116,"pg":214,"pb":0,"nr":255,"ng":0,"nb":0,"pth":"rgb(81,149,0)","nth":"#800000","thtype":1,"thmin":0,"thmax":1,"thpercentile":90,"height":20,"summeth":1},"metadata":{"md1":["H838","MACS"]}},{"type":"bedgraph","name":"H838 CAGE PE distclu Rep1","url":"http://wangftp.wustl.edu/~jjang/glioblastoma/CAGEseq/combined_raw_values/H838_distclu_unique_tagCluster_for_browser.trimmed.bed.gz","mode":1,"qtc":{"anglescale":1,"pr":0,"pg":174,"pb":219,"nr":212,"ng":18,"nb":67,"pth":"rgb(0,121,153)","nth":"rgb(148,12,46)","thtype":0,"thmin":0,"thmax":10,"thpercentile":90,"height":50,"summeth":1},"metadata":{"md1":["H838","CAGE"]}},{"type":"bedgraph","name":"H838 CAGE PE raw Rep1","url":"http://wangftp.wustl.edu/~jjang/glioblastoma/CAGEseq/combined_raw_values/H838.CTSS.raw.trimmed.bed.gz","mode":1,"qtc":{"anglescale":1,"pr":0,"pg":174,"pb":219,"nr":212,"ng":18,"nb":67,"pth":"rgb(0,121,153)","nth":"rgb(148,12,46)","thtype":0,"thmin":0,"thmax":10,"thpercentile":90,"height":50,"summeth":1},"metadata":{"md1":["H838","CAGE"]}},{"type":"bigwig","name":"H838 Rep1 RNA","url":"http://wangftp.wustl.edu/~jjang/glioblastoma/RNAseq/H838_RNA_Rep2.bigWig","mode":1,"qtc":{"anglescale":1,"pr":255,"pg":51,"pb":204,"nr":255,"ng":0,"nb":0,"pth":"rgb(178,35,142)","nth":"#800000","thtype":0,"thmin":0,"thmax":10,"thpercentile":90,"height":50,"summeth":1},"metadata":{"md1":["H838","RNA"]}},{"type":"bedgraph","name":"H1299 DMSO BSmooth","url":"http://wangftp.wustl.edu/~jjang/LTR12C/H2_DMSO_2lanes_merged.CG.ALL.call.gz.BSmooth.sorted.bed.gz","mode":1,"qtc":{"anglescale":1,"pr":0,"pg":0,"pb":230,"nr":255,"ng":0,"nb":0,"pth":"#000099","nth":"#800000","thtype":0,"thmin":0,"thmax":10,"thpercentile":90,"height":50,"summeth":1,"bedcolor":"rgb(100,139,216)"},"metadata":{"md1":["H1299_DMSO","BSseq"]}},{"type":"bigwig","name":"H1299 DMSO H3K27ac","url":"http://wangftp.wustl.edu/~jjang/LTR12C/DMSO_H3K27ac_ATCACG_L008_R1_complete_filtered.fastq.gz.bigWig","mode":1,"qtc":{"anglescale":1,"pr":0,"pg":135,"pb":68,"nr":255,"ng":0,"nb":0,"pth":"rgb(0,94,47)","nth":"#800000","thtype":0,"thmin":0,"thmax":10,"thpercentile":90,"height":50,"summeth":1},"metadata":{"md1":["H1299_DMSO","ATAC"]}},{"type":"bedgraph","name":"H1299 DMSO PE CAGE","url":"http://wangftp.wustl.edu/~jjang/LTR12C/DMSO_PE.CTSS.normalized.sorted.bed.gz","mode":1,"qtc":{"anglescale":1,"pr":0,"pg":174,"pb":219,"nr":212,"ng":18,"nb":67,"pth":"rgb(0,121,153)","nth":"rgb(148,12,46)","thtype":0,"thmin":0,"thmax":10,"thpercentile":90,"height":50,"summeth":1},"metadata":{"md1":["H1299_DMSO","CAGE"]}},{"type":"bedgraph","name":"H1299 DACSB BSmooth","url":"http://wangftp.wustl.edu/~jjang/LTR12C/H2_DAC_plus_SB939_2lanes_merged.CG.ALL.call.gz.BSmooth.sorted.bed.gz","mode":1,"qtc":{"anglescale":1,"pr":0,"pg":0,"pb":230,"nr":255,"ng":0,"nb":0,"pth":"#000099","nth":"#800000","thtype":0,"thmin":0,"thmax":10,"thpercentile":90,"height":50,"summeth":1,"bedcolor":"rgb(100,139,216)"},"metadata":{"md1":["H1299_DACSB","BSseq"]}},{"type":"bigwig","name":"H1299 DACSB H3K27ac","url":"http://wangftp.wustl.edu/~jjang/LTR12C/DACSB_H3K27ac_CTTGTA_L008_R1_complete_filtered.fastq.gz.bigWig","mode":1,"qtc":{"anglescale":1,"pr":0,"pg":135,"pb":68,"nr":255,"ng":0,"nb":0,"pth":"rgb(0,94,47)","nth":"#800000","thtype":0,"thmin":0,"thmax":10,"thpercentile":90,"height":50,"summeth":1},"metadata":{"md1":["H1299_DACSB","ATAC"]}},{"type":"bedgraph","name":"H1299 DACSB PE CAGE","url":"http://wangftp.wustl.edu/~jjang/LTR12C/DACSB_PE.CTSS.normalized.sorted.bed.gz","mode":1,"qtc":{"anglescale":1,"pr":0,"pg":174,"pb":219,"nr":212,"ng":18,"nb":67,"pth":"rgb(0,121,153)","nth":"rgb(148,12,46)","thtype":0,"thmin":0,"thmax":10,"thpercentile":90,"height":50,"summeth":1},"metadata":{"md1":["H1299_DACSB","CAGE"]}},{"type":"native_track","list":[{"name":"rmsk_all","mode":7,"qtc":{"anglescale":1,"pr":255,"pg":0,"pb":0,"nr":0,"ng":0,"nb":230,"pth":"#800000","nth":"#000099","thtype":0,"thmin":0,"thmax":10,"thpercentile":95,"height":35,"summeth":1,"textcolor":"#000000","fontsize":"8pt","fontfamily":"sans-serif","fontbold":false,"bedcolor":"#336666"},"showscoreidx":2,"scorenamelst":["Smith-Waterman score","SW score normalized by length","1-divergence%"],"scorescalelst":[{"type":0},{"type":0},{"type":0}],"metadata":{},"categories":{"1":["SINE - short interspersed nuclear elements","#cc0000"],"2":["LINE - long interspersed nuclear element","#FF6600"],"3":["LTR - long terminal repeat element","#006600"],"4":["DNA transposon","#4A72E8"],"5":["Simple repeat, micro-satellite","#AB833B"],"6":["Satellite repeat","#660000"],"7":["Low complexity repeat","#663333"],"8":["RNA repeat","#cc33ff"],"9":["Other repeats","#488E8E"],"10":["Unknown","#5C5C5C"],"-1":["no information","transparent"]}},{"name":"refGene","mode":3,"qtc":{"anglescale":1,"pr":255,"pg":0,"pb":0,"nr":0,"ng":0,"nb":230,"pth":"#800000","nth":"#000099","thtype":0,"thmin":0,"thmax":10,"thpercentile":95,"height":50,"summeth":1,"textcolor":"#000000","fontsize":"8pt","fontfamily":"sans-serif","fontbold":false,"bedcolor":"#002EB8"},"metadata":{},"details":{"source":"UCSC Genome Browser","download date":"Jan 1, 2012"}}]},{"type":"bigwig","name":"Glio B49 Rep1 RNA","url":"http://wangftp.wustl.edu/~jjang/glioblastoma/RNAseq/GlioB49_RNA_Rep1.bigWig","mode":"hide","qtc":{"pr":255,"pg":51,"pb":204,"pth":"rgb(178,35,142)","height":50,"thtype":0},"metadata":{"md1":["B49","RNA"]}},{"type":"bigwig","name":"Glio B36 Rep1 RNA","url":"http://wangftp.wustl.edu/~jjang/glioblastoma/RNAseq/GlioB36_RNA_Rep3.bigWig","mode":"hide","qtc":{"pr":255,"pg":51,"pb":204,"pth":"rgb(178,35,142)","height":50,"thtype":0},"metadata":{"md1":["B36","RNA"]}},{"type":"bigwig","name":"Glio B66-2 Rep1 ATAC","url":"http://wangftp.wustl.edu/~jjang/glioblastoma/origATACseq/B66_origATAC_Rep1.bigWig","mode":"hide","qtc":{"pr":0,"pg":135,"pb":68,"pth":"rgb(0,94,47)","height":50,"thtype":0},"metadata":{"md1":["B66","ATAC"]}},{"type":"bigwig","name":"Glio-B49 Rep1","url":"http://wangftp.wustl.edu/~jjang/glioblastoma/ATACseq_opt/Merged_WangT_B49_original_50k_R1.bigWig","mode":"hide","qtc":{"pr":0,"pg":135,"pb":68,"pth":"rgb(0,94,47)","height":50,"thtype":0},"metadata":{"md1":["B49","ATAC"]}},{"type":"bigwig","name":"Glio B36 Rep1 ATAC","url":"http://wangftp.wustl.edu/~jjang/glioblastoma/origATACseq/B36_origATAC_Rep1.bigWig","mode":"hide","qtc":{"pr":0,"pg":135,"pb":68,"pth":"rgb(0,94,47)","height":50,"thtype":0},"metadata":{"md1":["B36","ATAC"]}},{"type":"bigwig","name":"NHA (no lysis) Rep1 ATAC","url":"http://wangftp.wustl.edu/~jjang/glioblastoma/ATACseq_nolysis/Merged_WangT_NHA_ATAC_Rep1_SIC_index_0810_GACGTTGTG_S3_R1.sorted.rmdup.bigWig","mode":"hide","qtc":{"pr":0,"pg":135,"pb":68,"pth":"rgb(0,94,47)","height":50,"thtype":0},"metadata":{"md1":["NHA","ATAC"]}},{"type":"bedgraph","name":"GlioB66 CAGE PE raw Rep1","url":"http://wangftp.wustl.edu/~jjang/glioblastoma/CAGEseq/combined_raw_values/B66.CTSS.raw.trimmed.bed.gz","mode":"hide","qtc":{"pr":0,"pg":174,"pb":219,"pth":"rgb(0,121,153)","nr":212,"ng":18,"nb":67,"nth":"rgb(148,12,46)","height":50,"thtype":0},"metadata":{"md1":["B66","CAGE"]}},{"type":"bedgraph","name":"GlioB66 CAGE PE distclu Rep1","url":"http://wangftp.wustl.edu/~jjang/glioblastoma/CAGEseq/combined_raw_values/B66_distclu_unique_tagCluster_for_browser.trimmed.bed.gz","mode":"hide","qtc":{"pr":0,"pg":174,"pb":219,"pth":"rgb(0,121,153)","nr":212,"ng":18,"nb":67,"nth":"rgb(148,12,46)","height":50,"thtype":0},"metadata":{"md1":["B66","CAGE"]}},{"type":"bedgraph","name":"GlioB49 CAGE PE raw Rep1","url":"http://wangftp.wustl.edu/~jjang/glioblastoma/CAGEseq/combined_raw_values/B49.CTSS.raw.trimmed.bed.gz","mode":"hide","qtc":{"pr":0,"pg":174,"pb":219,"pth":"rgb(0,121,153)","nr":212,"ng":18,"nb":67,"nth":"rgb(148,12,46)","height":50,"thtype":0},"metadata":{"md1":["B49","CAGE"]}},{"type":"bedgraph","name":"GlioB49 CAGE PE distclu Rep1","url":"http://wangftp.wustl.edu/~jjang/glioblastoma/CAGEseq/combined_raw_values/B49_distclu_unique_tagCluster_for_browser.trimmed.bed.gz","mode":"hide","qtc":{"pr":0,"pg":174,"pb":219,"pth":"rgb(0,121,153)","nr":212,"ng":18,"nb":67,"nth":"rgb(148,12,46)","height":50,"thtype":0},"metadata":{"md1":["B49","CAGE"]}},{"type":"bedgraph","name":"GlioB36 CAGE raw Rep1","url":"http://wangftp.wustl.edu/~jjang/glioblastoma/CAGEseq/combined_raw_values/B36.CTSS.raw.trimmed.bed.gz","mode":"hide","qtc":{"pr":0,"pg":174,"pb":219,"pth":"rgb(0,121,153)","nr":212,"ng":18,"nb":67,"nth":"rgb(148,12,46)","height":50,"thtype":0},"metadata":{"md1":["B36","CAGE"]}},{"type":"bedgraph","name":"GlioB36 CAGE distclu Rep1","url":"http://wangftp.wustl.edu/~jjang/glioblastoma/CAGEseq/combined_raw_values/B36_distclu_unique_tagCluster_for_browser.trimmed.bed.gz","mode":"hide","qtc":{"pr":0,"pg":174,"pb":219,"pth":"rgb(0,121,153)","nr":212,"ng":18,"nb":67,"nth":"rgb(148,12,46)","height":50,"thtype":0},"metadata":{"md1":["B36","CAGE"]}},{"type":"bedgraph","name":"NHA CAGE PE raw Rep1","url":"http://wangftp.wustl.edu/~jjang/glioblastoma/CAGEseq/combined_raw_values/NHA.CTSS.raw.trimmed.bed.gz","mode":"hide","qtc":{"pr":0,"pg":174,"pb":219,"pth":"rgb(0,121,153)","nr":212,"ng":18,"nb":67,"nth":"rgb(148,12,46)","height":50,"thtype":0},"metadata":{"md1":["NHA","CAGE"]}},{"type":"bedgraph","name":"NHA CAGE PE distclu Rep1","url":"http://wangftp.wustl.edu/~jjang/glioblastoma/CAGEseq/combined_raw_values/NHA_distclu_unique_tagCluster_for_browser.trimmed.bed.gz","mode":"hide","qtc":{"pr":0,"pg":174,"pb":219,"pth":"rgb(0,121,153)","nr":212,"ng":18,"nb":67,"nth":"rgb(148,12,46)","height":50,"thtype":0},"metadata":{"md1":["NHA","CAGE"]}},{"type":"bedgraph","name":"B66 Rep1 BROAD MACS","url":"http://wangftp.wustl.edu/~jjang/glioblastoma/origATACseq/B66_Rep1_q0.01_peaks.broadPeak.sorted.bed.gz","mode":"hide","qtc":{"pr":116,"pg":214,"pb":0,"pth":"rgb(81,149,0)","thtype":1,"thmin":0,"thmax":1,"height":20},"metadata":{"md1":["B66","MACS"]}},{"type":"bedgraph","name":"B66 Rep1 q0.01 MACS","url":"http://wangftp.wustl.edu/~jjang/glioblastoma/origATACseq/B66_Rep1_q0.01_forbrowser.sorted.bed.gz","mode":"hide","qtc":{"pr":116,"pg":214,"pb":0,"pth":"rgb(81,149,0)","thtype":1,"thmin":0,"thmax":1,"height":20},"metadata":{"md1":["B66","MACS"]}},{"type":"bedgraph","name":"B49 Rep1 BROAD MACS","url":"http://wangftp.wustl.edu/~jjang/glioblastoma/origATACseq/B49_Rep1_q0.01_peaks.broadPeak.sorted.bed.gz","mode":"hide","qtc":{"pr":116,"pg":214,"pb":0,"pth":"rgb(81,149,0)","thtype":1,"thmin":0,"thmax":1,"height":20},"metadata":{"md1":["B49","MACS"]}},{"type":"bedgraph","name":"B49 Rep1 q0.01 MACS","url":"http://wangftp.wustl.edu/~jjang/glioblastoma/origATACseq/B49_Rep1_q0.01_forbrowser.sorted.bed.gz","mode":"hide","qtc":{"pr":116,"pg":214,"pb":0,"pth":"rgb(81,149,0)","thtype":1,"thmin":0,"thmax":1,"height":20},"metadata":{"md1":["B49","MACS"]}},{"type":"bedgraph","name":"B36 Rep1 BROAD MACS","url":"http://wangftp.wustl.edu/~jjang/glioblastoma/origATACseq/B36_Rep1_q0.01_peaks.broadPeak.sorted.bed.gz","mode":"hide","qtc":{"pr":116,"pg":214,"pb":0,"pth":"rgb(81,149,0)","thtype":1,"thmin":0,"thmax":1,"height":20},"metadata":{"md1":["B36","MACS"]}},{"type":"bedgraph","name":"B36 Rep1 q0.01 MACS","url":"http://wangftp.wustl.edu/~jjang/glioblastoma/origATACseq/B36_Rep1_q0.01_forbrowser.sorted.bed.gz","mode":"hide","qtc":{"pr":116,"pg":214,"pb":0,"pth":"rgb(81,149,0)","thtype":1,"thmin":0,"thmax":1,"height":20},"metadata":{"md1":["B36","MACS"]}},{"tracks":{"forward":{"CG":{"color":"rgb(100,139,216)","bg":"#d9d9d9","url":"http://wangftp.wustl.edu/~jjang/glioblastoma/BSseq/NHA_Rep1_meth.sorted.bedGraph.gz"},"ReadDepth":{"color":"#525252","url":"http://wangftp.wustl.edu/~jjang/glioblastoma/BSseq/NHA_Rep1_cov.sorted.bedGraph.gz"}}},"type":"methylc","name":"NHA Meth Rep1","mode":"hide","qtc":{"height":50},"metadata":{"md1":["NHA","BSseq"]}},{"tracks":{"forward":{"CG":{"color":"rgb(100,139,216)","bg":"#d9d9d9","url":"http://wangftp.wustl.edu/~jjang/glioblastoma/BSseq/GlioB36_Trypsin_meth.sorted.bedGraph.gz"},"ReadDepth":{"color":"#525252","url":"http://wangftp.wustl.edu/~jjang/glioblastoma/BSseq/GlioB36_Trypsin_cov.sorted.bedGraph.gz"}}},"type":"methylc","name":"Glio B36 Meth Rep1","mode":"hide","qtc":{"height":50},"metadata":{"md1":["B36","BSseq"]}},{"tracks":{"forward":{"CG":{"color":"rgb(100,139,216)","bg":"#d9d9d9","url":"http://wangftp.wustl.edu/~jjang/glioblastoma/BSseq/GlioB49_Rep1_meth.sorted.bedGraph.gz"},"ReadDepth":{"color":"#525252","url":"http://wangftp.wustl.edu/~jjang/glioblastoma/BSseq/GlioB49_Rep1_cov.sorted.bedGraph.gz"}}},"type":"methylc","name":"Glio B49 Meth Rep1","mode":"hide","qtc":{"height":50},"metadata":{"md1":["B49","BSseq"]}},{"tracks":{"forward":{"CG":{"color":"rgb(100,139,216)","bg":"#d9d9d9","url":"http://wangftp.wustl.edu/~jjang/glioblastoma/BSseq/GlioB66_Rep1_meth.sorted.bedGraph.gz"},"ReadDepth":{"color":"#525252","url":"http://wangftp.wustl.edu/~jjang/glioblastoma/BSseq/GlioB66_Rep1_cov.sorted.bedGraph.gz"}}},"type":"methylc","name":"Glio B66 Meth Rep1","mode":"hide","qtc":{"height":50},"metadata":{"md1":["B66","BSseq"]}},{"type":"metadata","vocabulary_set":{"md1":{"vocabulary":{"Cell lines":["NHA","B36","B49","B66","H838","H1299_DMSO","H1299_DACSB"],"Assay":["BSseq","ATAC","MACS","CAGE","RNA"]},"source":"http://wangftp.wustl.edu/~jjang/glioblastoma/glio_wH1299.txt"}},"show_terms":{"md1":["Cell lines","Assay"]}},{"type":"coordinate_override","coord":"chr6,105376457,chr6,105414014"}]