[{"type":"categorical","name":"E017 IMR90 chromatin state","url":"http://egg.wustl.edu/d/hg19/E017_15_coreMarks_dense.gz","public":true,"mode":"show","qtc":{"anglescale":1,"height":21,"bg":null},"annotation":["11310","27004","30002"],"categories":{"1":["Active_TSS","#ff0000"],"2":["Flanking_Active_TSS","#ff4500"],"3":["Transcr_at_gene_5_and_3primer","#32cd32"],"4":["Strong_transcription","#008000"],"5":["Weak_transcription","#006400"],"6":["Genic_enhancers","#c2e105"],"7":["Enhancers","#ffff00"],"8":["ZNF_genes&repeats","#66cdaa"],"9":["Heterochromatin","#8a91d0"],"10":["Bivalent/Poised_TSS","#cd5c5c"],"11":["Flanking_Bivalent_TSS/Enh","#e9967a"],"12":["Bivalent_Enhancer","#bdb76b"],"13":["Repressed_PolyComb","#808080"],"14":["Weak_Repressed_PolyComb","#c0c0c0"],"15":["Quiescent/Low","#ffffff"],"-1":["no information","transparent"]},"details":{"NEW EID":"E017","Epigenome Mnemonic":"LNG.IMR90","Epigenome name":"IMR90_Cell_Line","download_url":"http://www.broadinstitute.org/~anshul/projects/roadmap/segmentations/models/coreMarks/parallel/set2/final/E017_15_coreMarks_dense.bed.gz"}},{"type":"bigWig","name":"RNA-Seq of IMR90 (fetal lung fibroblast)","url":"http://egg.wustl.edu/d/hg19/GSM438363_0.bigWig","public":true,"mode":"show","qtc":{"anglescale":1,"pr":0,"pg":0,"pb":230,"nr":255,"ng":0,"nb":0,"pth":"#ffff00","nth":"#800000","thtype":0,"thmin":0,"thmax":10,"thpercentile":90,"height":31,"summeth":1,"smooth":5,"bg":null},"annotation":["11310","25002","30002"],"details":{"disease":"None","biomaterial_provider":"ATCC","biomaterial_type":"Cell Line","line":"IMR90","lineage":"NA","batch":"1","differentiation_stage":"Fetal lung fibroblast","differentiation_method":"NA","passage":"4","medium":"Minimum Essential Medium, Eagle with Earle's Balanced Salt Solution supplemented with 10% Fetal Bovine Serum (FBS), 1% Pen/Strep (penicillin, streptomycin), 1% GlutaMax (stable form of glutamine)","Sex":"Female","experiment_type":"mRNA-Seq","extraction_protocol":"mirVana miRNA isolation kit (Applied Biosystems), performed as per manufacturer's instructions to isolate total RNA, followed by treatment with DNaseI (Qiagen) for 30 min at room temperature","extraction_protocol_mrna_enrichment":"2 x RiboMinus (Life Technologies) rRNA depletion (5S, 5.8S, 12S, 18S, 28S)","extraction_protocol_fragmentation":"15 min at 70 C with RNA Fragmentation kit (Ambion/Applied Biosystems) as per manufacturer's instructions","mrna_preparation_initial_mrna_qnty":"200 ng","mrna_preparation_fragment_size_range":"50-400 bp","rna_preparation_5'_rna_adapter_sequence":"5' GUUCAGAGUUCUACAGUCCGACGAUC","rna_preparation_3'_rna_adapter_sequence":"5' UCGUAUGCCGUCUUCUGCUUGidT, 5' adenylated (Illumina)","rna_preparation_reverse_transcription_primer_sequence":"5' CAAGCAGAAGACGGCATACGA","rna_preparation_5'_dephosphorylation":"Fragmented RNA was treated with 5 U Antarctic phosphatase (New England Biolabs) for 40 min at 37C in the presence of 40 U RNaseOut followed by phosphatase heat inactivation at 65C for 5 min. The RNA was purified using 66 l SPRI beads (Agencourt) and eluted in 11 l 10 mM Tris buffer pH 8.0.","rna_preparation_5'_phosphorylation":"Phosphorylation was performed by addition of 10 U PNK (New England Biolabs), 1 mM ATP, and 20 U RNaseOut  (Life Technologies) and incubation at 37C for 1 h.","rna_preparation_3'_rna_adapter_ligation_protocol":"1 l of 1:10 diluted adenylated 3 RNA adapter oligonucleotide was added to the phosphorylated RNA and incubated at 70C for 2 min followed by placement on ice. The 3 RNA adapter ligation reaction was performed by addition of 2 l 10x T4 RNA ligase 2 truncated ligation buffer, 1.6 l 100 mM MgCl2, 20 U RNaseOut and 300 U T4 RNA ligase 2 truncated (New England Biolabs) and incubation at 22C for 1 h.","rna_preparation_5'_rna_adapter_ligation_protocol":"Ligation of the 5 RNA adapter was performed by addition to the 3 adapter ligated reaction of 1 l 1:1 diluted, heat denatured (70C 2 min) 5 RNA adapter oligonucleotide, 1 l 10 mM ATP, and 10 U T4 RNA ligase (Promega), and incubation at 20C for 1 h. RNA was purified using 66 l SPRI beads and eluted in 10 l 10 mM Tris buffer pH 8.0.","rna_preparation_reverse_transcription_protocol":"To the RNA ligation products, 2 l 1:5 diluted RT primer was added and heat denatured (70C 2 min), followed by incubation on ice. Added to the denatured RNA/primer solution was 4 l 5x first strand buffer, 1 l 12.5 mM dNTPs, 2 l 100 mM DTT, and 40 U RNaseOut, followed by incubation at 48C for 1 min. To this, 200 U Superscript II reverse transcriptase (Life Technologies) was added, followed by incubation at 44C for 1 h.","library_generation_pcr_template":"The entire reverse transcription reaction was used in the PCR enrichment of the library.","library_generation_pcr_polymerase_type":"Phusion hot-start high fidelity DNA polymerase (New England Biolabs). 1x Phusion polymerase buffer and 4 U Phusion hot-start high fidelity DNA polymerase was used in a 100 l reaction.","library_generation_pcr_thermocycling_program":"98C 30 sec, 98C 10 sec, 60C 30 sec, 72C 15 sec, 72C 10 min","library_generation_pcr_number_cycles":"15","library_generation_pcr_f_primer_sequence":"5' AATGATACGGCGACCACCGACAGGTTCAGAGTTCTACAGTCCGA","library_generation_pcr_r_primer_sequence":"5' CAAGCAGAAGACGGCATACGA","library_generation_pcr_primer_conc":"0.25 M","library_generation_pcr_product_isolation_protocol":"PCR products were purified in two steps, first by purification using 180 l SPRI beads and elution in 30 l 10 mM Tris buffer pH 8.0, followed by purification with 39 l SPRI beads and elution in 10 l 10 mM Tris buffer pH 8.0.","original_filename":"GSM438363_UCSD.IMR90.mRNA-Seq.mRNA-seq_imr90_r1.bigWig"},"geolst":["GSM438363"]},{"type":"bigWig","name":"H3K36me3 of IMR90 (fetal lung fibroblast)","url":"http://egg.wustl.edu/d/hg19/GSM521890.bigWig","public":true,"mode":"show","qtc":{"anglescale":1,"pr":33,"pg":97,"pb":11,"nr":255,"ng":0,"nb":0,"pth":"#ffff00","nth":"#800000","thtype":0,"thmin":0,"thmax":10,"thpercentile":90,"height":31,"summeth":1,"smooth":5,"bg":null},"annotation":["11310","22020","30002"],"details":{"molecule":"genomic DNA"," disease":"None","biomaterial_provider":"ATCC","biomaterial_type":"Cell Line","line":"IMR90","lineage":"NA","batch":"1","differentiation_stage":"Fetal lung fibroblast","differentiation_method":"NA","passage":"4","medium":"Minimum Essential Medium, Eagle with Earle's Balanced Salt Solution supplemented with 10% Fetal Bovine Serum (FBS), 1% Pen/Strep (penicillin, streptomycin), 1% GlutaMax (stable form of glutamine)","Sex":"Female","experiment_type":"Histone H3K36me3","extraction_protocol":"See","extraction_protocol_type_of_sonicator":"Branson Tip Sonicator","extraction_protocol_sonication_cycles":"30","chip_protocol":"See","chip_protocol_chromatin_amount":"500 micrograms","chip_protocol_bead_type":"magnetic anti-rabbit","chip_protocol_bead_amount":"33,500,000","chip_protocol_antibody_amount":"5 micrograms","chip_antibody":"H3K36me3","chip_antibody_provider":"Abcam","chip_antibody_catalog":"ab9050","chip_antibody_lot":"475787","original_filename":"GSM521890_UCSD.IMR90.H3K36me3.LL225.bigWig","Embargo end date":"2010-12-22"},"geolst":["GSM521890"]},{"type":"bigWig","name":"H4K20me1 of IMR90 (fetal lung fibroblast)","url":"http://egg.wustl.edu/d/hg19/GSM521915.bigWig","public":true,"mode":"show","qtc":{"anglescale":1,"pr":0,"pg":150,"pb":150,"nr":255,"ng":0,"nb":0,"pth":"#ffff00","nth":"#800000","thtype":0,"thmin":0,"thmax":10,"thpercentile":90,"height":16,"summeth":1,"smooth":5,"bg":null},"annotation":["11310","22025","30002"],"details":{"molecule":"genomic DNA"," disease":"None","biomaterial_provider":"ATCC","biomaterial_type":"Cell Line","line":"IMR90","lineage":"NA","batch":"2","differentiation_stage":"Fetal lung fibroblast","differentiation_method":"NA","passage":"NA","medium":"Minimum Essential Medium, Eagle with Earle's Balanced Salt Solution supplemented with 10% Fetal Bovine Serum (FBS), 1% Pen/Strep (penicillin, streptomycin), 1% GlutaMax (stable form of glutamine)","Sex":"Female","experiment_type":"Histone H4K20me1","extraction_protocol":"See","extraction_protocol_type_of_sonicator":"Biorupter","extraction_protocol_sonication_cycles":"80","chip_protocol":"See","chip_protocol_chromatin_amount":"500 micrograms","chip_protocol_bead_type":"magnetic anti-rabbit","chip_protocol_bead_amount":"33,500,000","chip_protocol_antibody_amount":"5 micrograms","chip_antibody":"H4K20me1","chip_antibody_provider":"Abcam","chip_antibody_catalog":"ab9051","chip_antibody_lot":"519198","original_filename":"GSM521915_UCSD.IMR90.H4K20me1.YL21.bigWig","Embargo end date":"2010-12-22"},"geolst":["GSM521915"]},{"type":"bigWig","name":"H3K79me2 of IMR90 (fetal lung fibroblast)","url":"http://egg.wustl.edu/d/hg19/GSM521909.bigWig","public":true,"mode":"show","qtc":{"anglescale":1,"pr":170,"pg":170,"pb":0,"nr":255,"ng":0,"nb":0,"pth":"#ffff00","nth":"#800000","thtype":0,"thmin":0,"thmax":10,"thpercentile":90,"height":16,"summeth":1,"smooth":5,"bg":null},"annotation":["11310","22022","30002"],"details":{"molecule":"genomic DNA"," disease":"None","biomaterial_provider":"ATCC","biomaterial_type":"Cell Line","line":"IMR90","lineage":"NA","batch":"2","differentiation_stage":"Fetal lung fibroblast","differentiation_method":"NA","passage":"NA","medium":"Minimum Essential Medium, Eagle with Earle's Balanced Salt Solution supplemented with 10% Fetal Bovine Serum (FBS), 1% Pen/Strep (penicillin, streptomycin), 1% GlutaMax (stable form of glutamine)","Sex":"Female","experiment_type":"Histone H3K79me2","extraction_protocol":"See","extraction_protocol_type_of_sonicator":"Biorupter","extraction_protocol_sonication_cycles":"80","chip_protocol":"See","chip_protocol_chromatin_amount":"500 micrograms","chip_protocol_bead_type":"magnetic anti-rabbit","chip_protocol_bead_amount":"33,500,000","chip_protocol_antibody_amount":"5 micrograms","chip_antibody":"H3K79me2","chip_antibody_provider":"Abcam","chip_antibody_catalog":"ab3594","chip_antibody_lot":"573640","original_filename":"GSM521909_UCSD.IMR90.H3K79me2.LL238.bigWig","Embargo end date":"2010-12-22"},"geolst":["GSM521909"]},{"type":"bigWig","name":"H3K79me1 of IMR90 (fetal lung fibroblast)","url":"http://egg.wustl.edu/d/hg19/GSM521904.bigWig","public":true,"mode":"show","qtc":{"anglescale":1,"pr":185,"pg":0,"pb":185,"nr":255,"ng":0,"nb":0,"pth":"#ffff00","nth":"#800000","thtype":0,"thmin":0,"thmax":10,"thpercentile":90,"height":16,"summeth":1,"smooth":5,"bg":null},"annotation":["11310","22023","30002"],"details":{"molecule":"genomic DNA"," disease":"None","biomaterial_provider":"ATCC","biomaterial_type":"Cell Line","line":"IMR90","lineage":"NA","batch":"2","differentiation_stage":"Fetal lung fibroblast","differentiation_method":"NA","passage":"NA","medium":"Minimum Essential Medium, Eagle with Earle's Balanced Salt Solution supplemented with 10% Fetal Bovine Serum (FBS), 1% Pen/Strep (penicillin, streptomycin), 1% GlutaMax (stable form of glutamine)","Sex":"Female","experiment_type":"Histone H3K79me1","extraction_protocol":"See","extraction_protocol_type_of_sonicator":"Biorupter","extraction_protocol_sonication_cycles":"80","chip_protocol":"See","chip_protocol_chromatin_amount":"500 micrograms","chip_protocol_bead_type":"magnetic anti-rabbit","chip_protocol_bead_amount":"33,500,000","chip_protocol_antibody_amount":"5 micrograms","chip_antibody":"H3K79me1","chip_antibody_provider":"Abcam","chip_antibody_catalog":"ab2886-100","chip_antibody_lot":"502497","original_filename":"GSM521904_UCSD.IMR90.H3K79me1.YL16.bigWig","Embargo end date":"2010-12-22"},"geolst":["GSM521904"]},{"type":"bigWig","name":"H3K9me1 of IMR90 (fetal lung fibroblast)","url":"http://egg.wustl.edu/d/hg19/GSM752987_0.bigWig","public":true,"mode":"show","qtc":{"anglescale":1,"pr":150,"pg":0,"pb":0,"nr":255,"ng":0,"nb":0,"pth":"#ffff00","nth":"#800000","thtype":0,"thmin":0,"thmax":10,"thpercentile":90,"height":16,"summeth":1,"smooth":5,"bg":null},"annotation":["11310","22029","30002"],"details":{"sample_alias":"IMR90-03","sample_common_name":"IMR90 Cell Line","molecule":"genomic DNA","disease":"None","biomaterial_provider":"ATCC","biomaterial_type":"Cell Line","line":"IMR90","lineage":"NA","batch":"3","differentiation_stage":"Fetal lung fibroblast","differentiation_method":"NA","passage":"NA","medium":"Minimum Essential Medium, Eagle with Earle's Balanced Salt Solution supplemented with 10% Fetal Bovine Serum (FBS), 1% Pen/Strep (penicillin, streptomycin), 1% GlutaMax (stable form of glutamine)","Sex":"Female","experiment_type":"Histone H3K9me1","extraction_protocol":"See","extraction_protocol_type_of_sonicator":"Biorupter","extraction_protocol_sonication_cycles":"80","chip_protocol":"See","chip_protocol_chromatin_amount":"500 micrograms","chip_protocol_bead_type":"magnetic anti-rabbit","chip_protocol_bead_amount":"33,500,000","chip_protocol_antibody_amount":"5 micrograms","chip_antibody":"H3K9me1","chip_antibody_provider":"Abcam","chip_antibody_catalog":"ab8896","chip_antibody_lot":"377518","original_filename":"GSM752987_UCSD.IMR90.H3K9me1.SK12.bigWig"},"geolst":["GSM752987"]},{"type":"bigWig","name":"DNase hypersensitivity of IMR90 (fetal lung fibroblast)","url":"http://egg.wustl.edu/d/hg19/GSM468801.bigWig","public":true,"mode":"show","qtc":{"anglescale":1,"pr":0,"pg":77,"pb":0,"nr":255,"ng":0,"nb":0,"pth":"#ffff00","nth":"#800000","thtype":0,"thmin":0,"thmax":10,"thpercentile":90,"height":31,"summeth":1,"smooth":5,"bg":null},"annotation":["11310","23001","30004"],"details":{"molecule":"genomic DNA"," disease":"None","biomaterial_provider":"ATCC","biomaterial_type":"Cell Line","line":"IMR90","lineage":"NA","differentiation_stage":"Fetal lung fibroblast","differentiation_method":"NA","passage":"4","medium":"Eagle's Minimum Essential Medium, Catalog No. 30-2003.","Sex":"Female","batch":"CCL-186","experiment_type":"Chromatin Accessibility","extraction_protocol":"Qiagen minElut","dnase_protocol":"Stamlab DNase Protocol","original_filename":"GSM468801_UW.IMR90.ChromatinAccessibility.DS11764.bigWig","Embargo end date":"2010-10-06"},"geolst":["GSM468801"]},{"type":"bigWig","name":"Digital Genomic Footprinting of IMR90 (fetal lung fibroblast)","url":"http://egg.wustl.edu/d/hg19/GSM723024_0.bigWig","public":true,"mode":"show","qtc":{"anglescale":1,"pr":11,"pg":59,"pb":23,"nr":255,"ng":0,"nb":0,"pth":"#ffff00","nth":"#800000","thtype":0,"thmin":0,"thmax":10,"thpercentile":90,"height":16,"summeth":1,"smooth":5,"bg":null},"annotation":["11310","23002","30004"],"details":{"sample_alias":"IMR90","sample_common_name":"IMR90 Cell Line","molecule":"genomic DNA","disease":"None","biomaterial_provider":"ATCC","biomaterial_type":"Cell Line","line":"IMR90","lineage":"NA","differentiation_stage":"Fetal lung fibroblast","differentiation_method":"NA","passage":"4","medium":"Eagle's Minimum Essential Medium, Catalog No. 30-2003.","Sex":"Female","batch":"CCL-186","experiment_type":"Digital Genomic Footprinting","extraction_protocol":"Qiagen minElut","dnase_protocol":"Stamlab DNase Protocol, Sabo, P. J. et al. Nat Methods 3, 511-518 (2006)","original_filename":"GSM723024_UW.IMR90.Digital_Genomic_Footprinting.DGF.DS13219.bigWig"},"geolst":["GSM723024"]},{"type":"bigWig","name":"ChIP-Seq input of IMR90 (fetal lung fibroblast)","url":"http://egg.wustl.edu/d/hg19/GSM521926.bigWig","public":true,"mode":"show","qtc":{"anglescale":1,"pr":0,"pg":0,"pb":200,"nr":255,"ng":0,"nb":0,"pth":"#ffff00","nth":"#800000","thtype":0,"thmin":0,"thmax":10,"thpercentile":90,"height":16,"summeth":1,"smooth":5,"bg":null},"annotation":["11310","22001","30002"],"details":{"molecule":"genomic DNA"," disease":"None","biomaterial_provider":"ATCC","biomaterial_type":"Cell Line","line":"IMR90","lineage":"NA","batch":"1","differentiation_stage":"Fetal lung fibroblast","differentiation_method":"NA","passage":"4","medium":"Minimum Essential Medium, Eagle with Earle's Balanced Salt Solution supplemented with 10% Fetal Bovine Serum (FBS), 1% Pen/Strep (penicillin, streptomycin), 1% GlutaMax (stable form of glutamine)","Sex":"Female","experiment_type":"ChIP-Seq Input","extraction_protocol":"See","extraction_protocol_type_of_sonicator":"Branson Tip Sonicator","extraction_protocol_sonication_cycles":"30","chip_protocol":"Input","chip_protocol_chromatin_amount":"500 micrograms","original_filename":"GSM521926_UCSD.IMR90.Input.LL-I1.bigWig","Embargo end date":"2010-12-22"},"geolst":["GSM521926"]},{"type":"bedGraph","name":"H3K4me3 of IMR90 (fetal lung fibroblast)","url":"http://egg.wustl.edu/d/hg19/GSM521901.gz","public":true,"mode":"show","qtc":{"anglescale":1,"pr":0,"pg":117,"pb":0,"nr":255,"ng":0,"nb":0,"pth":"#ffff00","nth":"#800000","thtype":0,"thmin":0,"thmax":10,"thpercentile":90,"height":31,"summeth":1,"smooth":5,"bg":null},"annotation":["11310","22009","30002"],"details":{"molecule":"genomic DNA"," disease":"None","biomaterial_provider":"ATCC","biomaterial_type":"Cell Line","line":"IMR90","lineage":"NA","batch":"4","differentiation_stage":"Fetal lung fibroblast","differentiation_method":"NA","passage":"NA","medium":"Minimum Essential Medium, Eagle with Earle's Balanced Salt Solution supplemented with 10% Fetal Bovine Serum (FBS), 1% Pen/Strep (penicillin, streptomycin), 1% GlutaMax (stable form of glutamine)","Sex":"Female","experiment_type":"Histone H3K4me3","extraction_protocol":"See","extraction_protocol_type_of_sonicator":"Bioruptor","extraction_protocol_sonication_cycles":"120","chip_protocol":"See","chip_protocol_chromatin_amount":"500 micrograms","chip_protocol_bead_type":"magnetic anti-rabbit","chip_protocol_bead_amount":"33,500,000","chip_protocol_antibody_amount":"5 micrograms","chip_antibody":"H3K4me3","chip_antibody_provider":"Active Motif","chip_antibody_catalog":"AM39159","chip_antibody_lot":"15808002","original_filename":"GSM521901_UCSD.IMR90.H3K4me3.SK03.bigWig","Embargo end date":"2010-12-22"},"geolst":["GSM521901"]},{"type":"bigWig","name":"H3K56ac of IMR90 (fetal lung fibroblast)","url":"http://egg.wustl.edu/d/hg19/GSM521902.bigWig","public":true,"mode":"show","qtc":{"anglescale":1,"pr":0,"pg":149,"pb":149,"nr":255,"ng":0,"nb":0,"pth":"#ffff00","nth":"#800000","thtype":0,"thmin":0,"thmax":10,"thpercentile":90,"height":16,"summeth":1,"smooth":5,"bg":null},"annotation":["11310","22021","30002"],"details":{"molecule":"genomic DNA"," disease":"None","biomaterial_provider":"ATCC","biomaterial_type":"Cell Line","line":"IMR90","lineage":"NA","batch":"2","differentiation_stage":"Fetal lung fibroblast","differentiation_method":"NA","passage":"NA","medium":"Minimum Essential Medium, Eagle with Earle's Balanced Salt Solution supplemented with 10% Fetal Bovine Serum (FBS), 1% Pen/Strep (penicillin, streptomycin), 1% GlutaMax (stable form of glutamine)","Sex":"Female","experiment_type":"Histone H3K56ac","extraction_protocol":"See","extraction_protocol_type_of_sonicator":"Biorupter","extraction_protocol_sonication_cycles":"80","chip_protocol":"See","chip_protocol_chromatin_amount":"500 micrograms","chip_protocol_bead_type":"magnetic anti-rabbit","chip_protocol_bead_amount":"33,500,000","chip_protocol_antibody_amount":"5 micrograms","chip_antibody":"H3K56ac","chip_antibody_provider":"Upstate","chip_antibody_catalog":"07-677","chip_antibody_lot":"DAM1462569","original_filename":"GSM521902_UCSD.IMR90.H3K56ac.YL05.bigWig","Embargo end date":"2010-12-22"},"geolst":["GSM521902"]},{"type":"bigWig","name":"H2A.Z of IMR90 (fetal lung fibroblast)","url":"http://egg.wustl.edu/d/hg19/GSM818008.bigWig","public":true,"mode":"show","qtc":{"anglescale":1,"pr":51,"pg":102,"pb":190,"nr":255,"ng":0,"nb":0,"pth":"#ffff00","nth":"#800000","thtype":0,"thmin":0,"thmax":10,"thpercentile":90,"height":31,"summeth":1,"smooth":5,"bg":null},"annotation":["11310","22028","30002"],"details":{"sample_alias":"IMR90-13","sample_common_name":"IMR90 Cell Line","molecule":"genomic DNA","disease":"None","biomaterial_provider":"ATCC","biomaterial_type":"Cell Line","line":"IMR90","lineage":"NA","batch":"13","differentiation_stage":"Fetal lung fibroblast","differentiation_method":"NA","passage":"NA","medium":"Minimum Essential Medium, Eagle with Earle's Balanced Salt Solution supplemented with 10% Fetal Bovine Serum (FBS), 1% Pen/Strep (penicillin, streptomycin), 1% GlutaMax (stable form of glutamine)","Sex":"Female","experiment_type":"Histone H2A.Z","extraction_protocol":"See ","extraction_protocol_type_of_sonicator":"Biorupter","extraction_protocol_sonication_cycles":"80","chip_protocol":"See ","chip_protocol_chromatin_amount":"500 micrograms","chip_protocol_bead_type":"magnetic anti-rabbit","chip_protocol_bead_amount":"33,500,000","chip_protocol_antibody_amount":"5 micrograms","chip_antibody":"H2A.Z","chip_antibody_provider":"Abcam","chip_antibody_catalog":"ab4174-100","chip_antibody_lot":"460460"},"geolst":["GSM818008"]},{"type":"bigWig","name":"H2AK9ac of IMR90 (fetal lung fibroblast)","url":"http://egg.wustl.edu/d/hg19/GSM818013.bigWig","public":true,"mode":"show","qtc":{"anglescale":1,"pr":158,"pg":84,"pb":0,"nr":255,"ng":0,"nb":0,"pth":"#ffff00","nth":"#800000","thtype":0,"thmin":0,"thmax":10,"thpercentile":90,"height":16,"summeth":1,"smooth":5,"bg":null},"annotation":["11310","22066","30002"],"details":{"sample_alias":"IMR90-13","sample_common_name":"IMR90 Cell Line","molecule":"genomic DNA","disease":"None","biomaterial_provider":"ATCC","biomaterial_type":"Cell Line","line":"IMR90","lineage":"NA","batch":"13","differentiation_stage":"Fetal lung fibroblast","differentiation_method":"NA","passage":"NA","medium":"Minimum Essential Medium, Eagle with Earle's Balanced Salt Solution supplemented with 10% Fetal Bovine Serum (FBS), 1% Pen/Strep (penicillin, streptomycin), 1% GlutaMax (stable form of glutamine)","Sex":"Female","experiment_type":"Histone H2AK9ac","extraction_protocol":"See ","extraction_protocol_type_of_sonicator":"Biorupter","extraction_protocol_sonication_cycles":"80","chip_protocol":"See ","chip_protocol_chromatin_amount":"500 micrograms","chip_protocol_bead_type":"magnetic anti-rabbit","chip_protocol_bead_amount":"33,500,000","chip_protocol_antibody_amount":"5 micrograms","chip_antibody":"H2AK9ac","chip_antibody_provider":"Upstate","chip_antibody_catalog":"07-289","chip_antibody_lot":"22178"},"geolst":["GSM818013"]},{"type":"bigWig","name":"H2BK5ac of IMR90 (fetal lung fibroblast)","url":"http://egg.wustl.edu/d/hg19/GSM832838.bigWig","public":true,"mode":"show","qtc":{"anglescale":1,"pr":0,"pg":120,"pb":110,"nr":255,"ng":0,"nb":0,"pth":"#ffff00","nth":"#800000","thtype":0,"thmin":0,"thmax":10,"thpercentile":90,"height":16,"summeth":1,"smooth":5,"bg":null},"annotation":["11310","22003","30002"],"details":{"sample_alias":"IMR90-02","sample_common_name":"IMR90 Cell Line","molecule":"genomic DNA","disease":"None","biomaterial_provider":"ATCC","biomaterial_type":"Cell Line","line":"IMR90","lineage":"NA","batch":"2","differentiation_stage":"Fetal lung fibroblast","differentiation_method":"NA","passage":"NA","medium":"Minimum Essential Medium, Eagle with Earle's Balanced Salt Solution supplemented with 10% Fetal Bovine Serum (FBS), 1% Pen/Strep (penicillin, streptomycin), 1% GlutaMax (stable form of glutamine)","Sex":"Female","experiment_type":"Histone H2BK5ac","extraction_protocol":"See ","extraction_protocol_type_of_sonicator":"Bioruptor","extraction_protocol_sonication_cycles":"80","chip_protocol":"See ","chip_protocol_chromatin_amount":"500 micrograms","chip_protocol_bead_type":"magnetic anti-rabbit","chip_protocol_bead_amount":"33,500,000","chip_protocol_antibody_amount":"5 micrograms","chip_antibody":"H2BK5ac","chip_antibody_provider":"Abcam","chip_antibody_catalog":"ab40886","chip_antibody_lot":"529107"},"geolst":["GSM832838"]},{"type":"bigWig","name":"H3K9ac of IMR90 (fetal lung fibroblast)","url":"http://egg.wustl.edu/d/hg19/GSM521912.bigWig","public":true,"mode":"show","qtc":{"anglescale":1,"pr":46,"pg":92,"pb":0,"nr":255,"ng":0,"nb":0,"pth":"#ffff00","nth":"#800000","thtype":0,"thmin":0,"thmax":10,"thpercentile":90,"height":16,"summeth":1,"smooth":5,"bg":null},"annotation":["11310","22013","30002"],"details":{"molecule":"genomic DNA"," disease":"None","biomaterial_provider":"ATCC","biomaterial_type":"Cell Line","line":"IMR90","lineage":"NA","batch":"5","differentiation_stage":"Fetal lung fibroblast","differentiation_method":"NA","passage":"NA","medium":"Minimum Essential Medium, Eagle with Earle's Balanced Salt Solution supplemented with 10% Fetal Bovine Serum (FBS), 1% Pen/Strep (penicillin, streptomycin), 1% GlutaMax (stable form of glutamine)","Sex":"Female","experiment_type":"Histone H3K9ac","extraction_protocol":"See","extraction_protocol_type_of_sonicator":"Bioruptor","extraction_protocol_sonication_cycles":"120","chip_protocol":"See","chip_protocol_chromatin_amount":"500 micrograms","chip_protocol_bead_type":"magnetic anti-rabbit","chip_protocol_bead_amount":"33,500,000","chip_protocol_antibody_amount":"5 micrograms","chip_antibody":"H3K9ac","chip_antibody_provider":"Active Motif","chip_antibody_catalog":"AM39137","chip_antibody_lot":"1008001","original_filename":"GSM521912_UCSD.IMR90.H3K9ac.SK46.bigWig","Embargo end date":"2010-12-22"},"geolst":["GSM521912"]},{"type":"bigWig","name":"H3K4me2 of IMR90 (fetal lung fibroblast)","url":"http://egg.wustl.edu/d/hg19/GSM521900.bigWig","public":true,"mode":"show","qtc":{"anglescale":1,"pr":0,"pg":82,"pb":41,"nr":255,"ng":0,"nb":0,"pth":"#ffff00","nth":"#800000","thtype":0,"thmin":0,"thmax":10,"thpercentile":90,"height":16,"summeth":1,"smooth":5,"bg":null},"annotation":["11310","22008","30002"],"details":{"molecule":"genomic DNA"," disease":"None","biomaterial_provider":"ATCC","biomaterial_type":"Cell Line","line":"IMR90","lineage":"NA","batch":"4","differentiation_stage":"Fetal lung fibroblast","differentiation_method":"NA","passage":"NA","medium":"Minimum Essential Medium, Eagle with Earle's Balanced Salt Solution supplemented with 10% Fetal Bovine Serum (FBS), 1% Pen/Strep (penicillin, streptomycin), 1% GlutaMax (stable form of glutamine)","Sex":"Female","experiment_type":"Histone H3K4me2","extraction_protocol":"See","extraction_protocol_type_of_sonicator":"Bioruptor","extraction_protocol_sonication_cycles":"120","chip_protocol":"See","chip_protocol_chromatin_amount":"500 micrograms","chip_protocol_bead_type":"magnetic anti-rabbit","chip_protocol_bead_amount":"33,500,000","chip_protocol_antibody_amount":"5 micrograms","chip_antibody":"H3K4me2","chip_antibody_provider":"Abcam","chip_antibody_catalog":"ab32356","chip_antibody_lot":"577702","original_filename":"GSM521900_UCSD.IMR90.H3K4me2.SK07.bigWig","Embargo end date":"2010-12-22"},"geolst":["GSM521900"]},{"type":"bigWig","name":"H3K18ac of IMR90 (fetal lung fibroblast)","url":"http://egg.wustl.edu/d/hg19/GSM469965.bigWig","public":true,"mode":"show","qtc":{"anglescale":1,"pr":150,"pg":0,"pb":0,"nr":255,"ng":0,"nb":0,"pth":"#ffff00","nth":"#800000","thtype":0,"thmin":0,"thmax":10,"thpercentile":90,"height":16,"summeth":1,"smooth":5,"bg":null},"annotation":["11310","22015","30002"],"details":{"molecule":"genomic DNA"," disease":"None","biomaterial_provider":"ATCC","biomaterial_type":"Cell Line","line":"IMR90","lineage":"NA","batch":"1","differentiation_stage":"Fetal lung fibroblast","differentiation_method":"NA","passage":"4","medium":"Minimum Essential Medium, Eagle with Earle's Balanced Salt Solution supplemented with 10% Fetal Bovine Serum (FBS), 1% Pen/Strep (penicillin, streptomycin), 1% GlutaMax (stable form of glutamine)","Sex":"Female","experiment_type":"Histone H3K18ac","extraction_protocol":"See","extraction_protocol_type_of_sonicator":"Branson Tip Sonicator","extraction_protocol_sonication_cycles":"30","chip_protocol":"See","chip_protocol_chromatin_amount":"500 micrograms","chip_protocol_bead_type":"magnetic anti-rabbit","chip_protocol_bead_amount":"33,500,000","chip_protocol_antibody_amount":"5 micrograms","chip_antibody":"H3K18ac","chip_antibody_provider":"Abcam","chip_antibody_catalog":"Ab1191","chip_antibody_lot":"122116","original_filename":"GSM469965_UCSD.IMR90.H3K18ac.LL230.bigWig","Embargo end date":"2010-12-22"},"geolst":["GSM469965"]},{"type":"bedGraph","name":"H3K4me1 of IMR90 (fetal lung fibroblast)","url":"http://egg.wustl.edu/d/hg19/GSM521895.gz","public":true,"mode":"show","qtc":{"anglescale":1,"pr":0,"pg":133,"pb":66,"nr":255,"ng":0,"nb":0,"pth":"#ffff00","nth":"#800000","thtype":0,"thmin":0,"thmax":10,"thpercentile":90,"height":31,"summeth":1,"smooth":5,"bg":null},"annotation":["11310","22010","30002"],"details":{"molecule":"genomic DNA"," disease":"None","biomaterial_provider":"ATCC","biomaterial_type":"Cell Line","line":"IMR90","lineage":"NA","batch":"1","differentiation_stage":"Fetal lung fibroblast","differentiation_method":"NA","passage":"4","medium":"Minimum Essential Medium, Eagle with Earle's Balanced Salt Solution supplemented with 10% Fetal Bovine Serum (FBS), 1% Pen/Strep (penicillin, streptomycin), 1% GlutaMax (stable form of glutamine)","Sex":"Female","experiment_type":"Histone H3K4me1","extraction_protocol":"See","extraction_protocol_type_of_sonicator":"Branson Tip Sonicator","extraction_protocol_sonication_cycles":"30","chip_protocol":"See","chip_protocol_chromatin_amount":"500 micrograms","chip_protocol_bead_type":"magnetic anti-rabbit","chip_protocol_bead_amount":"33,500,000","chip_protocol_antibody_amount":"5 micrograms","chip_antibody":"H3K4me1","chip_antibody_provider":"Abcam","chip_antibody_catalog":"ab8895","chip_antibody_lot":"u535659","original_filename":"GSM521895_UCSD.IMR90.H3K4me1.LL222.bigWig","Embargo end date":"2010-12-22"},"geolst":["GSM521895"]},{"type":"bigWig","name":"H3K27ac of IMR90 (fetal lung fibroblast)","url":"http://egg.wustl.edu/d/hg19/GSM469967.bigWig","public":true,"mode":"show","qtc":{"anglescale":1,"pr":0,"pg":0,"pb":150,"nr":255,"ng":0,"nb":0,"pth":"#ffff00","nth":"#800000","thtype":0,"thmin":0,"thmax":10,"thpercentile":90,"height":16,"summeth":1,"smooth":5,"bg":null},"annotation":["11310","22019","30002"],"details":{"molecule":"genomic DNA"," disease":"None","biomaterial_provider":"ATCC","biomaterial_type":"Cell Line","line":"IMR90","lineage":"NA","batch":"1","differentiation_stage":"Fetal lung fibroblast","differentiation_method":"NA","passage":"4","medium":"Minimum Essential Medium, Eagle with Earle's Balanced Salt Solution supplemented with 10% Fetal Bovine Serum (FBS), 1% Pen/Strep (penicillin, streptomycin), 1% GlutaMax (stable form of glutamine)","Sex":"Female","experiment_type":"Histone H3K27ac","extraction_protocol":"See","extraction_protocol_type_of_sonicator":"Branson Tip Sonicator","extraction_protocol_sonication_cycles":"30","chip_protocol":"See","chip_protocol_chromatin_amount":"500 micrograms","chip_protocol_bead_type":"magnetic anti-rabbit","chip_protocol_bead_amount":"33,500,000","chip_protocol_antibody_amount":"5 micrograms","chip_antibody":"H3K27ac","chip_antibody_provider":"Abcam","chip_antibody_catalog":"Ab4729","chip_antibody_lot":"454269","original_filename":"GSM469967_UCSD.IMR90.H3K27ac.LL235.bigWig","Embargo end date":"2010-12-22"},"geolst":["GSM469967"]},{"type":"bigWig","name":"H4K5ac of IMR90 (fetal lung fibroblast)","url":"http://egg.wustl.edu/d/hg19/GSM521918.bigWig","public":true,"mode":"show","qtc":{"anglescale":1,"pr":150,"pg":0,"pb":150,"nr":255,"ng":0,"nb":0,"pth":"#ffff00","nth":"#800000","thtype":0,"thmin":0,"thmax":10,"thpercentile":90,"height":16,"summeth":1,"smooth":5,"bg":null},"annotation":["11310","22027","30002"],"details":{"molecule":"genomic DNA"," disease":"None","biomaterial_provider":"ATCC","biomaterial_type":"Cell Line","line":"IMR90","lineage":"NA","batch":"4","differentiation_stage":"Fetal lung fibroblast","differentiation_method":"NA","passage":"NA","medium":"Minimum Essential Medium, Eagle with Earle's Balanced Salt Solution supplemented with 10% Fetal Bovine Serum (FBS), 1% Pen/Strep (penicillin, streptomycin), 1% GlutaMax (stable form of glutamine)","Sex":"Female","experiment_type":"Histone H4K5ac","extraction_protocol":"See","extraction_protocol_type_of_sonicator":"Biorupter","extraction_protocol_sonication_cycles":"120","chip_protocol":"See","chip_protocol_chromatin_amount":"500 micrograms","chip_protocol_bead_type":"magnetic anti-rabbit","chip_protocol_bead_amount":"33,500,000","chip_protocol_antibody_amount":"5 micrograms","chip_antibody":"H4K5ac","chip_antibody_provider":"Upstate","chip_antibody_catalog":"07-327","chip_antibody_lot":"30417","original_filename":"GSM521918_UCSD.IMR90.H4K5ac.SK08.bigWig","Embargo end date":"2010-12-22"},"geolst":["GSM521918"]},{"type":"bigWig","name":"H4K8ac of IMR90 (fetal lung fibroblast)","url":"http://egg.wustl.edu/d/hg19/GSM521919.bigWig","public":true,"mode":"show","qtc":{"anglescale":1,"pr":94,"pg":97,"pb":11,"nr":255,"ng":0,"nb":0,"pth":"#ffff00","nth":"#800000","thtype":0,"thmin":0,"thmax":10,"thpercentile":90,"height":16,"summeth":1,"smooth":5,"bg":null},"annotation":["11310","22024","30002"],"details":{"molecule":"genomic DNA"," disease":"None","biomaterial_provider":"ATCC","biomaterial_type":"Cell Line","line":"IMR90","lineage":"NA","batch":"2","differentiation_stage":"Fetal lung fibroblast","differentiation_method":"NA","passage":"NA","medium":"Minimum Essential Medium, Eagle with Earle's Balanced Salt Solution supplemented with 10% Fetal Bovine Serum (FBS), 1% Pen/Strep (penicillin, streptomycin), 1% GlutaMax (stable form of glutamine)","Sex":"Female","experiment_type":"Histone H4K8ac","extraction_protocol":"See","extraction_protocol_type_of_sonicator":"Biorupter","extraction_protocol_sonication_cycles":"80","chip_protocol":"See","chip_protocol_chromatin_amount":"500 micrograms","chip_protocol_bead_type":"magnetic anti-rabbit","chip_protocol_bead_amount":"33,500,000","chip_protocol_antibody_amount":"5 micrograms","chip_antibody":"H4K8ac","chip_antibody_provider":"Upstate","chip_antibody_catalog":"07-328","chip_antibody_lot":"DAM1487557","original_filename":"GSM521919_UCSD.IMR90.H4K8ac.YL17.bigWig","Embargo end date":"2010-12-22"},"geolst":["GSM521919"]},{"type":"bigWig","name":"H3K4ac of IMR90 (fetal lung fibroblast)","url":"http://egg.wustl.edu/d/hg19/GSM521894.bigWig","public":true,"mode":"show","qtc":{"anglescale":1,"pr":113,"pg":113,"pb":0,"nr":255,"ng":0,"nb":0,"pth":"#ffff00","nth":"#800000","thtype":0,"thmin":0,"thmax":10,"thpercentile":90,"height":16,"summeth":1,"smooth":5,"bg":null},"annotation":["11310","22011","30002"],"details":{"molecule":"genomic DNA"," disease":"None","biomaterial_provider":"ATCC","biomaterial_type":"Cell Line","line":"IMR90","lineage":"NA","batch":"3","differentiation_stage":"Fetal lung fibroblast","differentiation_method":"NA","passage":"NA","medium":"Minimum Essential Medium, Eagle with Earle's Balanced Salt Solution supplemented with 10% Fetal Bovine Serum (FBS), 1% Pen/Strep (penicillin, streptomycin), 1% GlutaMax (stable form of glutamine)","Sex":"Female","experiment_type":"Histone H3K4ac","extraction_protocol":"See","extraction_protocol_type_of_sonicator":"Biorupter","extraction_protocol_sonication_cycles":"120","chip_protocol":"See","chip_protocol_chromatin_amount":"500 micrograms","chip_protocol_bead_type":"magnetic anti-rabbit","chip_protocol_bead_amount":"33,500,000","chip_protocol_antibody_amount":"5 micrograms","chip_antibody":"H3K4ac","chip_antibody_provider":"Upstate","chip_antibody_catalog":"07-539","chip_antibody_lot":"26747","original_filename":"GSM521894_UCSD.IMR90.H3K4ac.SK16.bigWig","Embargo end date":"2010-12-22"},"geolst":["GSM521894"]},{"type":"bigWig","name":"H3K14ac of IMR90 (fetal lung fibroblast)","url":"http://egg.wustl.edu/d/hg19/GSM521883.bigWig","public":true,"mode":"show","qtc":{"anglescale":1,"pr":0,"pg":0,"pb":200,"nr":255,"ng":0,"nb":0,"pth":"#ffff00","nth":"#800000","thtype":0,"thmin":0,"thmax":10,"thpercentile":90,"height":16,"summeth":1,"smooth":5,"bg":null},"annotation":["11310","22014","30002"],"details":{"molecule":"genomic DNA"," disease":"None","biomaterial_provider":"ATCC","biomaterial_type":"Cell Line","line":"IMR90","lineage":"NA","batch":"3","differentiation_stage":"Fetal lung fibroblast","differentiation_method":"NA","passage":"NA","medium":"Minimum Essential Medium, Eagle with Earle's Balanced Salt Solution supplemented with 10% Fetal Bovine Serum (FBS), 1% Pen/Strep (penicillin, streptomycin), 1% GlutaMax (stable form of glutamine)","Sex":"Female","experiment_type":"Histone H3K14ac","extraction_protocol":"See","extraction_protocol_type_of_sonicator":"Biorupter","extraction_protocol_sonication_cycles":"120","chip_protocol":"See","chip_protocol_chromatin_amount":"500 micrograms","chip_protocol_bead_type":"magnetic anti-rabbit","chip_protocol_bead_amount":"33,500,000","chip_protocol_antibody_amount":"5 micrograms","chip_antibody":"H3K14ac","chip_antibody_provider":"Upstate","chip_antibody_catalog":"07-353","chip_antibody_lot":"1462567","original_filename":"GSM521883_UCSD.IMR90.H3K14ac.SK17.bigWig","Embargo end date":"2010-12-22"},"geolst":["GSM521883"]},{"type":"bigWig","name":"H3K23ac of IMR90 (fetal lung fibroblast)","url":"http://egg.wustl.edu/d/hg19/GSM521886.bigWig","public":true,"mode":"show","qtc":{"anglescale":1,"pr":0,"pg":150,"pb":0,"nr":255,"ng":0,"nb":0,"pth":"#ffff00","nth":"#800000","thtype":0,"thmin":0,"thmax":10,"thpercentile":90,"height":16,"summeth":1,"smooth":5,"bg":null},"annotation":["11310","22017","30002"],"details":{"molecule":"genomic DNA"," disease":"None","biomaterial_provider":"ATCC","biomaterial_type":"Cell Line","line":"IMR90","lineage":"NA","batch":"3","differentiation_stage":"Fetal lung fibroblast","differentiation_method":"NA","passage":"NA","medium":"Minimum Essential Medium, Eagle with Earle's Balanced Salt Solution supplemented with 10% Fetal Bovine Serum (FBS), 1% Pen/Strep (penicillin, streptomycin), 1% GlutaMax (stable form of glutamine)","Sex":"Female","experiment_type":"Histone H3K23ac","extraction_protocol":"See","extraction_protocol_type_of_sonicator":"Biorupter","extraction_protocol_sonication_cycles":"120","chip_protocol":"See","chip_protocol_chromatin_amount":"500 micrograms","chip_protocol_bead_type":"magnetic anti-rabbit","chip_protocol_bead_amount":"33,500,000","chip_protocol_antibody_amount":"5 micrograms","chip_antibody":"H3K23ac","chip_antibody_provider":"Upstate","chip_antibody_catalog":"07-355","chip_antibody_lot":"502497","original_filename":"GSM521886_UCSD.IMR90.H3K23ac.SK18.bigWig","Embargo end date":"2010-12-22"},"geolst":["GSM521886"]},{"type":"bigWig","name":"H2AK5ac of IMR90 (fetal lung fibroblast)","url":"http://egg.wustl.edu/d/hg19/GSM521866.bigWig","public":true,"mode":"show","qtc":{"anglescale":1,"pr":140,"pg":97,"pb":0,"nr":255,"ng":0,"nb":0,"pth":"#ffff00","nth":"#800000","thtype":0,"thmin":0,"thmax":10,"thpercentile":90,"height":16,"summeth":1,"smooth":5,"bg":null},"annotation":["11310","22002","30002"],"details":{"molecule":"genomic DNA"," disease":"None","biomaterial_provider":"ATCC","biomaterial_type":"Cell Line","line":"IMR90","lineage":"NA","batch":"2","differentiation_stage":"Fetal lung fibroblast","differentiation_method":"NA","passage":"NA","medium":"Minimum Essential Medium, Eagle with Earle's Balanced Salt Solution supplemented with 10% Fetal Bovine Serum (FBS), 1% Pen/Strep (penicillin, streptomycin), 1% GlutaMax (stable form of glutamine)","Sex":"Female","experiment_type":"Histone H2AK5ac","extraction_protocol":"See","extraction_protocol_type_of_sonicator":"Biorupter","extraction_protocol_sonication_cycles":"80","chip_protocol":"See","chip_protocol_chromatin_amount":"500 micrograms","chip_protocol_bead_type":"magnetic anti-rabbit","chip_protocol_bead_amount":"33,500,000","chip_protocol_antibody_amount":"5 micrograms","chip_antibody":"H2AK5ac","chip_antibody_provider":"Abcam","chip_antibody_catalog":"ab45152","chip_antibody_lot":"496800","original_filename":"GSM521866_UCSD.IMR90.H2AK5ac.YL20.bigWig","Embargo end date":"2010-12-22"},"geolst":["GSM521866"]},{"type":"bigWig","name":"H4K91ac of IMR90 (fetal lung fibroblast)","url":"http://egg.wustl.edu/d/hg19/GSM521924.bigWig","public":true,"mode":"show","qtc":{"anglescale":1,"pr":0,"pg":120,"pb":120,"nr":255,"ng":0,"nb":0,"pth":"#ffff00","nth":"#800000","thtype":0,"thmin":0,"thmax":10,"thpercentile":90,"height":16,"summeth":1,"smooth":5,"bg":null},"annotation":["11310","22026","30002"],"details":{"molecule":"genomic DNA"," disease":"None","biomaterial_provider":"ATCC","biomaterial_type":"Cell Line","line":"IMR90","lineage":"NA","batch":"2","differentiation_stage":"Fetal lung fibroblast","differentiation_method":"NA","passage":"NA","medium":"Minimum Essential Medium, Eagle with Earle's Balanced Salt Solution supplemented with 10% Fetal Bovine Serum (FBS), 1% Pen/Strep (penicillin, streptomycin), 1% GlutaMax (stable form of glutamine)","Sex":"Female","experiment_type":"Histone H4K91ac","extraction_protocol":"See","extraction_protocol_type_of_sonicator":"Biorupter","extraction_protocol_sonication_cycles":"80","chip_protocol":"See","chip_protocol_chromatin_amount":"500 micrograms","chip_protocol_bead_type":"magnetic anti-rabbit","chip_protocol_bead_amount":"33,500,000","chip_protocol_antibody_amount":"5 micrograms","chip_antibody":"H4K91ac","chip_antibody_provider":"Abcam","chip_antibody_catalog":"ab4627","chip_antibody_lot":"82963","original_filename":"GSM521924_UCSD.IMR90.H4K91ac.YL08.bigWig","Embargo end date":"2010-12-22"},"geolst":["GSM521924"]},{"type":"bigWig","name":"H2BK120ac of IMR90 (fetal lung fibroblast)","url":"http://egg.wustl.edu/d/hg19/GSM521870.bigWig","public":true,"mode":"show","qtc":{"anglescale":1,"pr":0,"pg":148,"pb":64,"nr":255,"ng":0,"nb":0,"pth":"#ffff00","nth":"#800000","thtype":0,"thmin":0,"thmax":10,"thpercentile":90,"height":16,"summeth":1,"smooth":5,"bg":null},"annotation":["11310","22004","30002"],"details":{"molecule":"genomic DNA"," disease":"None","biomaterial_provider":"ATCC","biomaterial_type":"Cell Line","line":"IMR90","lineage":"NA","batch":"3","differentiation_stage":"Fetal lung fibroblast","differentiation_method":"NA","passage":"NA","medium":"Minimum Essential Medium, Eagle with Earle's Balanced Salt Solution supplemented with 10% Fetal Bovine Serum (FBS), 1% Pen/Strep (penicillin, streptomycin), 1% GlutaMax (stable form of glutamine)","Sex":"Female","experiment_type":"Histone H2BK120ac","extraction_protocol":"See","extraction_protocol_type_of_sonicator":"Biorupter","extraction_protocol_sonication_cycles":"120","chip_protocol":"See","chip_protocol_chromatin_amount":"500 micrograms","chip_protocol_bead_type":"magnetic anti-rabbit","chip_protocol_bead_amount":"33,500,000","chip_protocol_antibody_amount":"5 micrograms","chip_antibody":"H2BK120ac","chip_antibody_provider":"Upstate","chip_antibody_catalog":"07-567","chip_antibody_lot":"26872","original_filename":"GSM521870_UCSD.IMR90.H2BK120ac.SK15.bigWig","Embargo end date":"2010-12-22"},"geolst":["GSM521870"]},{"type":"bigWig","name":"H2BK12ac of IMR90 (fetal lung fibroblast)","url":"http://egg.wustl.edu/d/hg19/GSM521871.bigWig","public":true,"mode":"show","qtc":{"anglescale":1,"pr":0,"pg":0,"pb":175,"nr":255,"ng":0,"nb":0,"pth":"#ffff00","nth":"#800000","thtype":0,"thmin":0,"thmax":10,"thpercentile":90,"height":16,"summeth":1,"smooth":5,"bg":null},"annotation":["11310","22007","30002"],"details":{"molecule":"genomic DNA"," disease":"None","biomaterial_provider":"ATCC","biomaterial_type":"Cell Line","line":"IMR90","lineage":"NA","batch":"2","differentiation_stage":"Fetal lung fibroblast","differentiation_method":"NA","passage":"NA","medium":"Minimum Essential Medium, Eagle with Earle's Balanced Salt Solution supplemented with 10% Fetal Bovine Serum (FBS), 1% Pen/Strep (penicillin, streptomycin), 1% GlutaMax (stable form of glutamine)","Sex":"Female","experiment_type":"Histone H2BK12ac","extraction_protocol":"See","extraction_protocol_type_of_sonicator":"Biorupter","extraction_protocol_sonication_cycles":"80","chip_protocol":"See","chip_protocol_chromatin_amount":"500 micrograms","chip_protocol_bead_type":"magnetic anti-rabbit","chip_protocol_bead_amount":"33,500,000","chip_protocol_antibody_amount":"5 micrograms","chip_antibody":"H2BK12ac","chip_antibody_provider":"Abcam","chip_antibody_catalog":"ab40883","chip_antibody_lot":"451732","original_filename":"GSM521871_UCSD.IMR90.H2BK12ac.YL18.bigWig","Embargo end date":"2010-12-22"},"geolst":["GSM521871"]},{"type":"bigWig","name":"H2BK15ac of IMR90 (fetal lung fibroblast)","url":"http://egg.wustl.edu/d/hg19/GSM521875.bigWig","public":true,"mode":"show","qtc":{"anglescale":1,"pr":180,"pg":0,"pb":0,"nr":255,"ng":0,"nb":0,"pth":"#ffff00","nth":"#800000","thtype":0,"thmin":0,"thmax":10,"thpercentile":90,"height":16,"summeth":1,"smooth":5,"bg":null},"annotation":["11310","22006","30002"],"details":{"molecule":"genomic DNA"," disease":"None","biomaterial_provider":"ATCC","biomaterial_type":"Cell Line","line":"IMR90","lineage":"NA","batch":"2","differentiation_stage":"Fetal lung fibroblast","differentiation_method":"NA","passage":"NA","medium":"Minimum Essential Medium, Eagle with Earle's Balanced Salt Solution supplemented with 10% Fetal Bovine Serum (FBS), 1% Pen/Strep (penicillin, streptomycin), 1% GlutaMax (stable form of glutamine)","Sex":"Female","experiment_type":"Histone H2BK15ac","extraction_protocol":"See","extraction_protocol_type_of_sonicator":"Biorupter","extraction_protocol_sonication_cycles":"80","chip_protocol":"See","chip_protocol_chromatin_amount":"500 micrograms","chip_protocol_bead_type":"magnetic anti-rabbit","chip_protocol_bead_amount":"33,500,000","chip_protocol_antibody_amount":"5 micrograms","chip_antibody":"H2BK15ac","chip_antibody_provider":"Abcam","chip_antibody_catalog":"ab62335","chip_antibody_lot":"457743","original_filename":"GSM521875_UCSD.IMR90.H2BK15ac.YL19.bigWig","Embargo end date":"2010-12-22"},"geolst":["GSM521875"]},{"type":"bigWig","name":"H2BK20ac of IMR90 (fetal lung fibroblast)","url":"http://egg.wustl.edu/d/hg19/GSM521880.bigWig","public":true,"mode":"show","qtc":{"anglescale":1,"pr":40,"pg":100,"pb":20,"nr":255,"ng":0,"nb":0,"pth":"#ffff00","nth":"#800000","thtype":0,"thmin":0,"thmax":10,"thpercentile":90,"height":16,"summeth":1,"smooth":5,"bg":null},"annotation":["11310","22005","30002"],"details":{"molecule":"genomic DNA"," disease":"None","biomaterial_provider":"ATCC","biomaterial_type":"Cell Line","line":"IMR90","lineage":"NA","batch":"3","differentiation_stage":"Fetal lung fibroblast","differentiation_method":"NA","passage":"NA","medium":"Minimum Essential Medium, Eagle with Earle's Balanced Salt Solution supplemented with 10% Fetal Bovine Serum (FBS), 1% Pen/Strep (penicillin, streptomycin), 1% GlutaMax (stable form of glutamine)","Sex":"Female","experiment_type":"Histone H2BK20ac","extraction_protocol":"See","extraction_protocol_type_of_sonicator":"Biorupter","extraction_protocol_sonication_cycles":"120","chip_protocol":"See","chip_protocol_chromatin_amount":"500 micrograms","chip_protocol_bead_type":"magnetic anti-rabbit","chip_protocol_bead_amount":"33,500,000","chip_protocol_antibody_amount":"5 micrograms","chip_antibody":"H2BK20ac","chip_antibody_provider":"Upstate","chip_antibody_catalog":"07-347","chip_antibody_lot":"22355","original_filename":"GSM521880_UCSD.IMR90.H2BK20ac.SK14.bigWig","Embargo end date":"2010-12-22"},"geolst":["GSM521880"]},{"type":"bedGraph","name":"H3K27me3 of IMR90 (fetal lung fibroblast)","url":"http://egg.wustl.edu/d/hg19/GSM469968.gz","public":true,"mode":"show","qtc":{"anglescale":1,"pr":180,"pg":0,"pb":0,"nr":255,"ng":0,"nb":0,"pth":"#ffff00","nth":"#800000","thtype":0,"thmin":0,"thmax":10,"thpercentile":90,"height":31,"summeth":1,"smooth":5,"bg":null},"annotation":["11310","22018","30002"],"details":{"molecule":"genomic DNA"," disease":"None","biomaterial_provider":"ATCC","biomaterial_type":"Cell Line","line":"IMR90","lineage":"NA","batch":"1","differentiation_stage":"Fetal lung fibroblast","differentiation_method":"NA","passage":"4","medium":"Minimum Essential Medium, Eagle with Earle's Balanced Salt Solution supplemented with 10% Fetal Bovine Serum (FBS), 1% Pen/Strep (penicillin, streptomycin), 1% GlutaMax (stable form of glutamine)","Sex":"Female","experiment_type":"Histone H3K27me3","extraction_protocol":"See","extraction_protocol_type_of_sonicator":"Branson Tip Sonicator","extraction_protocol_sonication_cycles":"30","chip_protocol":"See","chip_protocol_chromatin_amount":"500 micrograms","chip_protocol_bead_type":"magnetic anti-rabbit","chip_protocol_bead_amount":"33,500,000","chip_protocol_antibody_amount":"5 micrograms","chip_antibody":"H3K27me3","chip_antibody_provider":"Upstate","chip_antibody_catalog":"07-449","chip_antibody_lot":"DAM1514011","original_filename":"GSM469968_UCSD.IMR90.H3K27me3.LL223.bigWig","Embargo end date":"2010-10-07"},"geolst":["GSM469968"]},{"type":"bigWig","name":"H3K9me3 of IMR90 (fetal lung fibroblast)","url":"http://egg.wustl.edu/d/hg19/GSM521914.bigWig","public":true,"mode":"show","qtc":{"anglescale":1,"pr":159,"pg":0,"pb":72,"nr":255,"ng":0,"nb":0,"pth":"#ffff00","nth":"#800000","thtype":0,"thmin":0,"thmax":10,"thpercentile":90,"height":31,"summeth":1,"smooth":5,"bg":null},"annotation":["11310","22012","30002"],"details":{"molecule":"genomic DNA"," disease":"None","biomaterial_provider":"ATCC","biomaterial_type":"Cell Line","line":"IMR90","lineage":"NA","batch":"6","differentiation_stage":"Fetal lung fibroblast","differentiation_method":"NA","passage":"NA","medium":"Minimum Essential Medium, Eagle with Earle's Balanced Salt Solution supplemented with 10% Fetal Bovine Serum (FBS), 1% Pen/Strep (penicillin, streptomycin), 1% GlutaMax (stable form of glutamine)","Sex":"Female","experiment_type":"Histone H3K9me3","extraction_protocol":"See","extraction_protocol_type_of_sonicator":"Biorupter","extraction_protocol_sonication_cycles":"150","chip_protocol":"See","chip_protocol_chromatin_amount":"500 micrograms","chip_protocol_bead_type":"magnetic anti-rabbit","chip_protocol_bead_amount":"33,500,000","chip_protocol_antibody_amount":"5 micrograms","chip_antibody":"H3K9me3","chip_antibody_provider":"Abcam","chip_antibody_catalog":"ab8898","chip_antibody_lot":"699671","original_filename":"GSM521914_UCSD.IMR90.H3K9me3.YL104.bigWig","Embargo end date":"2010-12-22"},"geolst":["GSM521914"]},{"type":"bedGraph","name":"Bisulfite-Seq of IMR90 (fetal lung fibroblast)","url":"http://egg.wustl.edu/d/hg19/GSM432687_1.gz","public":true,"mode":"show","qtc":{"anglescale":1,"pr":200,"pg":0,"pb":0,"nr":255,"ng":0,"nb":0,"pth":"#ffff00","nth":"#800000","thtype":0,"thmin":0,"thmax":10,"thpercentile":90,"height":31,"summeth":1,"barplotbg":"#cccccc","bg":null},"annotation":["11310","21004","30002"],"details":{"molecule":"genomic DNA"," disease":"None","biomaterial_provider":"ATCC","biomaterial_type":"Cell Line","line":"IMR90","lineage":"NA","batch":"Replicate 1","differentiation_stage":"Fetal lung fibroblast","differentiation_method":"NA","passage":"4","medium":"Minimum Essential Medium, Eagle with Earle's Balanced Salt Solution supplemented with 10% Fetal Bovine Serum (FBS), 1% Pen/Strep (penicillin, streptomycin), 1% GlutaMax (stable form of glutamine)","Sex":"Female","experiment_type":"DNA Methylation","extraction_protocol":"Qiagen DNeasy mini kit, performed as per manufacturer's instructions'","extraction_protocol_type_of_sonicator":"Diagenode Bioruptor","extraction_protocol_sonication_cycles":"20 cycles of","dna_preparation_initial_dna_qnty":"5 g","dna_preparation_fragment_size_range":"50-500 bp","dna_preparation_adaptor_sequence":"A","dna_preparation_adaptor_ligation_protocol":"Standard Illumina genomic DNA library preparation ligation protocol (15 minutes at room temperature), except the adapters contained methylcytosine and were supplied by Illumina","dna_preparation_post-ligation_fragment_size_selection":"Separation by electrophoresis on a 2% agarose gel followed by excision of 140-210 bp fragments","bisulfite_conversion_protocol":"Standard Human Genetic Signatures MethylEasy Xceed bisulfite conversion kit protocol","bisulfite_conversion_percent":"99.6% of cytosines converted based on shotgun sequencing of unmethylated lambda phage control spiked into original genomic DNA sample","library_generation_pcr_template_conc":"One third of the 140-210 nt adapter-ligated, bisulfite converted DNA was used in each 50 l PCR reaction","library_generation_pcr_polymerase_type":"Stratagene Pfu Turbo Cx","library_generation_pcr_thermocycling_program":"95C 2 min, 98C 30 sec, 4 cycles of 98C 15 sec, 60C 30 sec, 72C 4 min, 72C 10 min","library_generation_pcr_number_cycles":"4","library_generation_pcr_f_primer_sequence":"5' AATGATACGGCGACCACCGAGATCTACACTCTTTCCCTACACGACGCTCTTCCGATCT","library_generation_pcr_r_primer_sequence":"5' CAAGCAGAAGACGGCATACGAGCTCTTCCGATCT","library_generation_pcr_primer_conc":"25 M","library_generation_pcr_product_isolation_protocol":"Separation by electrophoresis on a 2% agarose gel followed by excision of 180-300 bp fragments.","original_filename":"GSM432687_UCSD.IMR90.Bisulfite-Seq.combined.bigWig","Embargo end date":"2010-07-13"},"geolst":["GSM432687"]},{"type":"native_track","list":[{"name":"refGene","mode":"full","qtc":{"anglescale":1,"pr":0,"pg":77,"pb":0,"nr":0,"ng":0,"nb":230,"pth":"#800000","nth":"#000099","thtype":0,"thmin":0,"thmax":10,"thpercentile":95,"height":50,"summeth":1,"textcolor":"rgb(0,0,0)","fontsize":"8pt","fontfamily":"sans-serif","fontbold":false,"bedcolor":"rgb(0,77,153)","bg":null}}]},{"type":"coordinate_override","coord":"chr9,34764838,chr9,38676145"}]