[{"type":"bigwig","name":"S19_S22_161222_HCC1599_GSI_Notch1_merged","url":"http://128.91.213.129/Breast_cancer_MB157_HCC1599/HCC1599_NTC/S19_S22_161222_HCC1599_GSI_Notch1_merged.bw","mode":1,"qtc":{"anglescale":1,"pr":0,"pg":0,"pb":230,"nr":255,"ng":0,"nb":0,"pth":"#000099","nth":"#800000","thtype":1,"thmin":0,"thmax":1,"thpercentile":90,"height":40,"summeth":2,"smooth":5},"metadata":{}},{"type":"bigwig","name":"S20_S23_161222_HCC1599_WO_Notch1_merged","url":"http://128.91.213.129/Breast_cancer_MB157_HCC1599/HCC1599_NTC/S20_S23_161222_HCC1599_WO_Notch1_merged.bw","mode":1,"qtc":{"anglescale":1,"pr":0,"pg":0,"pb":230,"nr":255,"ng":0,"nb":0,"pth":"#000099","nth":"#800000","thtype":1,"thmin":0,"thmax":1,"thpercentile":90,"height":40,"summeth":2,"smooth":5},"metadata":{}},{"type":"bigwig","name":"S99_171102_HCC1599_GSI_RBPJ_merged","url":"http://128.91.213.129/Breast_cancer_MB157_HCC1599/HCC1599_NTC/S99_171102_HCC1599_GSI_RBPJ_merged_sorted.bw","mode":1,"qtc":{"anglescale":1,"pr":0,"pg":0,"pb":230,"nr":255,"ng":0,"nb":0,"pth":"#000099","nth":"#800000","thtype":1,"thmin":0,"thmax":2,"thpercentile":90,"height":40,"summeth":2,"smooth":5},"metadata":{}},{"type":"bigwig","name":"s03_s04_171102_HCC1599_WO_Rbpj_merged","url":"http://128.91.213.129/Breast_cancer_MB157_HCC1599/HCC1599_NTC/s03_s04_171102_HCC1599_WO_Rbpj_merged.bw","mode":1,"qtc":{"anglescale":1,"pr":0,"pg":0,"pb":230,"nr":255,"ng":0,"nb":0,"pth":"#000099","nth":"#800000","thtype":1,"thmin":0,"thmax":2,"thpercentile":90,"height":40,"summeth":2,"smooth":5},"metadata":{}},{"type":"bigwig","name":"s01_170929_HCC1599_untreated_ATAC","url":"http://128.91.213.129/Breast_cancer_MB157_HCC1599/HCC1599_ATAC/s01_170929_HCC1599_untreated_ATAC_36160142_S1.filt.srt.nodup.noBlack.bam.bw","mode":1,"qtc":{"anglescale":1,"pr":0,"pg":128,"pb":128,"nr":0,"ng":128,"nb":128,"pth":"#000099","nth":"#800000","thtype":0,"thmin":0,"thmax":10,"thpercentile":90,"height":40,"summeth":2,"smooth":5},"metadata":{}},{"type":"bigwig","name":"s02_170929_HCC1599_untreated_ATAC","url":"http://128.91.213.129/Breast_cancer_MB157_HCC1599/HCC1599_ATAC/s02_170929_HCC1599_untreated_ATAC_36160142_S2.filt.srt.nodup.noBlack.bam.bw","mode":1,"qtc":{"anglescale":1,"pr":0,"pg":128,"pb":128,"nr":0,"ng":128,"nb":128,"pth":"#000099","nth":"#800000","thtype":0,"thmin":0,"thmax":10,"thpercentile":90,"height":40,"summeth":2,"smooth":5},"metadata":{}},{"type":"bigwig","name":"s01_170929_HCC1599_GSI_H3K27me3","url":"http://128.91.213.129/Breast_cancer_MB157_HCC1599/HCC1599_H3K27me3/s01_170929_HCC1599_GSI_H3K27me3_ChIPseq_36160142_S2.filt.srt.nodup.noBlack.bam.bw","mode":1,"qtc":{"anglescale":1,"pr":75,"pg":0,"pb":130,"nr":75,"ng":0,"nb":130,"pth":"#000099","nth":"#800000","thtype":0,"thmin":0,"thmax":10,"thpercentile":90,"height":40,"summeth":2,"smooth":5},"metadata":{}},{"type":"bigwig","name":"s01_170929_HCC1599_WO_H3K27me3","url":"http://128.91.213.129/Breast_cancer_MB157_HCC1599/HCC1599_H3K27me3/s01_170929_HCC1599_WO_H3K27me3_ChIPseq_36160142_S4.filt.srt.nodup.noBlack.bam.bw","mode":1,"qtc":{"anglescale":1,"pr":75,"pg":0,"pb":130,"nr":75,"ng":0,"nb":130,"pth":"#000099","nth":"#800000","thtype":0,"thmin":0,"thmax":10,"thpercentile":90,"height":40,"summeth":2,"smooth":5},"metadata":{}},{"type":"bigwig","name":"s05_170506_HCC1599_GSI_H3K4me1","url":"http://128.91.213.129/Breast_cancer_MB157_HCC1599/HCC1599_H3K4me1/s05_170506_HCC1599_GSI_H3K4me1_set1_25792768_S5.filt.srt.nodup.noBlack.bam.bw","mode":1,"qtc":{"anglescale":1,"pr":147,"pg":95,"pb":0,"nr":147,"ng":95,"nb":0,"pth":"#000099","nth":"#800000","thtype":0,"thmin":0,"thmax":10,"thpercentile":90,"height":40,"summeth":2,"smooth":5},"metadata":{}},{"type":"bigwig","name":"s08_170506_HCC1599_WO_H3K4me1","url":"http://128.91.213.129/Breast_cancer_MB157_HCC1599/HCC1599_H3K4me1/s08_170506_HCC1599_WO_H3K4me1_set2_25792768_S8.filt.srt.nodup.noBlack.bam.bw","mode":1,"qtc":{"anglescale":1,"pr":147,"pg":95,"pb":0,"nr":147,"ng":95,"nb":0,"pth":"#000099","nth":"#800000","thtype":0,"thmin":0,"thmax":10,"thpercentile":90,"height":40,"summeth":2,"smooth":5},"metadata":{}},{"type":"bigwig","name":"S99_170327_HCC1599_H3K27ac_GSI_merged","url":"http://128.91.213.129/Breast_cancer_MB157_HCC1599/MergedH3K27ac/S99_170327_HCC1599_H3K27ac_GSI_merged_noBlack.bw","mode":1,"qtc":{"anglescale":1,"pr":128,"pg":0,"pb":0,"nr":128,"ng":0,"nb":0,"pth":"#000099","nth":"#800000","thtype":0,"thmin":0,"thmax":10,"thpercentile":90,"height":40,"summeth":2,"smooth":5},"metadata":{}},{"type":"bigwig","name":"S99_170327_HCC1599_H3K27ac_WO_merged","url":"http://128.91.213.129/Breast_cancer_MB157_HCC1599/MergedH3K27ac/S99_170327_HCC1599_H3K27ac_WO_merged_noBlack.bw","mode":1,"qtc":{"anglescale":1,"pr":128,"pg":0,"pb":0,"nr":128,"ng":0,"nb":0,"pth":"#000099","nth":"#800000","thtype":0,"thmin":0,"thmax":7,"thpercentile":90,"height":40,"summeth":2,"smooth":5},"metadata":{}},{"type":"bigwig","name":"s01_170404_HCC1599_GSI_RNAseq","url":"http://128.91.213.129/Breast_cancer_MB157_HCC1599/HCC1599_RNAseq_total/s01_170404_HCC1599_GSI_RNAseq_23793824_S1_R1_001_NJ_norm.bw","mode":1,"qtc":{"anglescale":1,"pr":0,"pg":128,"pb":0,"nr":0,"ng":128,"nb":0,"pth":"#000099","nth":"#800000","thtype":0,"thmin":0,"thmax":10,"thpercentile":90,"height":40,"summeth":2,"smooth":5},"metadata":{}},{"type":"bigwig","name":"s06_170404_HCC1599_WO_RNAseq","url":"http://128.91.213.129/Breast_cancer_MB157_HCC1599/HCC1599_RNAseq_total/s06_170404_HCC1599_WO_RNAseq_23793824_S6_R1_001_NJ_norm.bw","mode":1,"qtc":{"anglescale":1,"pr":0,"pg":128,"pb":0,"nr":0,"ng":128,"nb":0,"pth":"#000099","nth":"#800000","thtype":0,"thmin":0,"thmax":10,"thpercentile":90,"height":40,"summeth":2,"smooth":5},"metadata":{}},{"type":"bed","name":"S99_170327_HCC1599_H3K27ac_WO_merged_noBlack-MACS2-FDR_1e-5-SHIFT_77_peaks.bed","url":"http://epigenomegateway.wustl.edu/browser/t/290991895.txt.gz","mode":2,"qtc":{"anglescale":1,"pr":255,"pg":0,"pb":0,"nr":0,"ng":0,"nb":230,"pth":"#800000","nth":"#000099","thtype":0,"thmin":0,"thmax":10,"thpercentile":95,"height":50,"summeth":1,"textcolor":"#000000","fontsize":"8pt","fontfamily":"sans-serif","fontbold":false,"bedcolor":"#336666"},"metadata":{}},{"type":"bed","name":"S99_170327_HCC1599_H3K27ac_GSI_merged_RPM_rank_SE_sort_5col.bed","url":"http://epigenomegateway.wustl.edu/browser/t/1869344910.txt.gz","mode":3,"qtc":{"anglescale":1,"pr":255,"pg":0,"pb":0,"nr":0,"ng":0,"nb":230,"pth":"#800000","nth":"#000099","thtype":0,"thmin":0,"thmax":10,"thpercentile":95,"height":50,"summeth":1,"textcolor":"#000000","fontsize":"8pt","fontfamily":"sans-serif","fontbold":false,"bedcolor":"rgb(54, 61, 102)"},"metadata":{}},{"type":"bed","name":"S99_170327_HCC1599_H3K27ac_WO_merged_RPM_rank_SE_sort_5col.bed","url":"http://epigenomegateway.wustl.edu/browser/t/590552572.txt.gz","mode":3,"qtc":{"anglescale":1,"pr":255,"pg":0,"pb":0,"nr":0,"ng":0,"nb":230,"pth":"#800000","nth":"#000099","thtype":0,"thmin":0,"thmax":10,"thpercentile":95,"height":50,"summeth":1,"textcolor":"#000000","fontsize":"8pt","fontfamily":"sans-serif","fontbold":false,"bedcolor":"rgb(127, 11, 34)"},"metadata":{}},{"type":"interaction","name":"S01_180315_HCC1599_DMSO_Smc1_HiChIP_686974_combined","url":"http://128.91.213.129:/Breast_cancer_MB157_HCC1599/180402_HCC1599_SMC1_HiCHIP/S01_180315_HCC1599_DMSO_Smc1_HiChIP_686974_combined_mango_washu.bed.gz","mode":4,"qtc":{"anglescale":1,"textcolor":"#000000","thtype":1,"fontsize":"8pt","fontfamily":"sans-serif","fontbold":false,"pr":184,"pg":0,"pb":138,"nr":0,"ng":99,"nb":133,"pcolorscore":49,"ncolorscore":0,"pfilterscore":4,"nfilterscore":-2,"height":50},"metadata":{}},{"type":"interaction","name":"S98_180329_HCC1599_GSI_Smc1_HiChIP_747577_combined","url":"http://128.91.213.129:/Breast_cancer_MB157_HCC1599/180402_HCC1599_SMC1_HiCHIP/S98_180329_HCC1599_GSI_Smc1_HiChIP_747577_combined_mango_washu.bed.gz","mode":4,"qtc":{"anglescale":1,"textcolor":"#000000","thtype":1,"fontsize":"8pt","fontfamily":"sans-serif","fontbold":false,"pr":184,"pg":0,"pb":138,"nr":0,"ng":99,"nb":133,"pcolorscore":49,"ncolorscore":0,"pfilterscore":4,"nfilterscore":-2,"height":50},"metadata":{}},{"type":"interaction","name":"180403_HCC1599_processed_tad","url":"http://128.91.213.129//Breast_cancer_MB157_HCC1599/180402_HCC1599_SMC1_HiCHIP/180403_HCC1599_processed_tad_washu.bed.gz","mode":4,"qtc":{"anglescale":1,"textcolor":"#000000","thtype":0,"fontsize":"8pt","fontfamily":"sans-serif","fontbold":false,"pr":11,"pg":11,"pb":145,"nr":0,"ng":99,"nb":133,"pcolorscore":0,"ncolorscore":0,"pfilterscore":0,"nfilterscore":-2,"height":50},"metadata":{}},{"type":"native_track","list":[{"name":"rmsk_all","mode":7,"qtc":{"anglescale":1,"pr":255,"pg":0,"pb":0,"nr":0,"ng":0,"nb":230,"pth":"#800000","nth":"#000099","thtype":0,"thmin":0,"thmax":10,"thpercentile":95,"height":35,"summeth":1,"textcolor":"#000000","fontsize":"8pt","fontfamily":"sans-serif","fontbold":false,"bedcolor":"#336666"},"showscoreidx":2,"scorenamelst":["Smith-Waterman score","SW score normalized by length","1-divergence%"],"scorescalelst":[{"type":0},{"type":0},{"type":0}],"metadata":{},"categories":{"1":["SINE - short interspersed nuclear elements","#cc0000"],"2":["LINE - long interspersed nuclear element","#FF6600"],"3":["LTR - long terminal repeat element","#006600"],"4":["DNA transposon","#4A72E8"],"5":["Simple repeat, micro-satellite","#AB833B"],"6":["Satellite repeat","#660000"],"7":["Low complexity repeat","#663333"],"8":["RNA repeat","#cc33ff"],"9":["Other repeats","#488E8E"],"10":["Unknown","#5C5C5C"],"-1":["no information","transparent"]}}]},{"type":"metadata","vocabulary_set":{}},{"type":"coordinate_override","coord":"chr8,128164476,chr8,128838645"}]