[{"type":"bedgraph","name":"SD1-AWT","url":"https://friedr05.u.hpc.mssm.edu/links_to_bioinformatics/linkstohg19RNA-Seq/SD1-AWT.bedgraph.gz","mode":1,"qtc":{"anglescale":1,"pr":0,"pg":0,"pb":230,"nr":255,"ng":0,"nb":0,"pth":"#000099","nth":"#800000","thtype":1,"thmin":0,"thmax":150,"thpercentile":90,"height":40,"summeth":1,"bg":"rgb(204,229,204)"},"metadata":{}},{"type":"bedgraph","name":"SD1-AKO","url":"https://friedr05.u.hpc.mssm.edu/links_to_bioinformatics/linkstohg19RNA-Seq/SD1-AKO.bedgraph.gz","mode":1,"qtc":{"anglescale":1,"pr":0,"pg":0,"pb":230,"nr":255,"ng":0,"nb":0,"pth":"#000099","nth":"#800000","thtype":1,"thmin":0,"thmax":150,"thpercentile":90,"height":40,"summeth":1,"bg":"rgb(204,229,204)"},"metadata":{}},{"type":"bedgraph","name":"SD1-WT1 (C1)","url":"https://friedr05.u.hpc.mssm.edu/links_to_bioinformatics/linkstohg19RNA-Seq/SD1_1.bedgraph.gz","mode":1,"qtc":{"anglescale":1,"pr":0,"pg":0,"pb":230,"nr":255,"ng":0,"nb":0,"pth":"#000099","nth":"#800000","thtype":1,"thmin":0,"thmax":300,"thpercentile":90,"height":40,"summeth":1,"bg":"rgb(255,219,219)"},"metadata":{}},{"type":"bedgraph","name":"SD1-WT2 (C3)","url":"https://friedr05.u.hpc.mssm.edu/links_to_bioinformatics/linkstohg19RNA-Seq/SD1_2.bedgraph.gz","mode":1,"qtc":{"anglescale":1,"pr":0,"pg":0,"pb":230,"nr":255,"ng":0,"nb":0,"pth":"#000099","nth":"#800000","thtype":1,"thmin":0,"thmax":300,"thpercentile":90,"height":40,"summeth":1,"bg":"rgb(255,219,219)"},"metadata":{}},{"type":"bedgraph","name":"SD1-WT3 (C5)","url":"https://friedr05.u.hpc.mssm.edu/links_to_bioinformatics/linkstohg19RNA-Seq/SD1_4.bedgraph.gz","mode":1,"qtc":{"anglescale":1,"pr":0,"pg":0,"pb":230,"nr":255,"ng":0,"nb":0,"pth":"#000099","nth":"#800000","thtype":1,"thmin":0,"thmax":300,"thpercentile":90,"height":40,"summeth":1,"bg":"rgb(255,219,219)"},"metadata":{}},{"type":"bedgraph","name":"SD1-KO1 (C4)","url":"https://friedr05.u.hpc.mssm.edu/links_to_bioinformatics/linkstohg19RNA-Seq/SD1_3.bedgraph.gz","mode":1,"qtc":{"anglescale":1,"pr":0,"pg":0,"pb":230,"nr":255,"ng":0,"nb":0,"pth":"#000099","nth":"#800000","thtype":1,"thmin":0,"thmax":300,"thpercentile":90,"height":40,"summeth":1,"bg":"rgb(255,219,219)"},"metadata":{}},{"type":"bedgraph","name":"SD1-KO2 (C6)","url":"https://friedr05.u.hpc.mssm.edu/links_to_bioinformatics/linkstohg19RNA-Seq/SD1_5.bedgraph.gz","mode":1,"qtc":{"anglescale":1,"pr":0,"pg":0,"pb":230,"nr":255,"ng":0,"nb":0,"pth":"#000099","nth":"#800000","thtype":1,"thmin":0,"thmax":300,"thpercentile":90,"height":40,"summeth":1,"bg":"rgb(255,219,219)"},"metadata":{}},{"type":"bedgraph","name":"SD1-KO3 (C8)","url":"https://friedr05.u.hpc.mssm.edu/links_to_bioinformatics/linkstohg19RNA-Seq/SD1_6.bedgraph.gz","mode":1,"qtc":{"anglescale":1,"pr":0,"pg":0,"pb":230,"nr":255,"ng":0,"nb":0,"pth":"#000099","nth":"#800000","thtype":1,"thmin":0,"thmax":300,"thpercentile":90,"height":40,"summeth":1,"bg":"rgb(255,219,219)"},"metadata":{}},{"type":"bedgraph","name":"SD2-AWT","url":"https://friedr05.u.hpc.mssm.edu/links_to_bioinformatics/linkstohg19RNA-Seq/SD2-AWT.bedgraph.gz","mode":1,"qtc":{"anglescale":1,"pr":0,"pg":0,"pb":230,"nr":255,"ng":0,"nb":0,"pth":"#000099","nth":"#800000","thtype":1,"thmin":0,"thmax":150,"thpercentile":90,"height":40,"summeth":1,"bg":"rgb(204,229,204)"},"metadata":{}},{"type":"bedgraph","name":"SD2-AKO","url":"https://friedr05.u.hpc.mssm.edu/links_to_bioinformatics/linkstohg19RNA-Seq/SD2-AKO.bedgraph.gz","mode":1,"qtc":{"anglescale":1,"pr":0,"pg":0,"pb":230,"nr":255,"ng":0,"nb":0,"pth":"#000099","nth":"#800000","thtype":1,"thmin":0,"thmax":150,"thpercentile":90,"height":40,"summeth":1,"bg":"rgb(204,229,204)"},"metadata":{}},{"type":"bedgraph","name":"SD3-AWT","url":"https://friedr05.u.hpc.mssm.edu/links_to_bioinformatics/linkstohg19RNA-Seq/SD3-AWT.bedgraph.gz","mode":1,"qtc":{"anglescale":1,"pr":0,"pg":0,"pb":230,"nr":255,"ng":0,"nb":0,"pth":"#000099","nth":"#800000","thtype":1,"thmin":0,"thmax":150,"thpercentile":90,"height":40,"summeth":1,"bg":"rgb(204,229,204)"},"metadata":{}},{"type":"bedgraph","name":"SD3-AKO","url":"https://friedr05.u.hpc.mssm.edu/links_to_bioinformatics/linkstohg19RNA-Seq/SD3-AKO.bedgraph.gz","mode":1,"qtc":{"anglescale":1,"pr":0,"pg":0,"pb":230,"nr":255,"ng":0,"nb":0,"pth":"#000099","nth":"#800000","thtype":1,"thmin":0,"thmax":150,"thpercentile":90,"height":40,"summeth":1,"bg":"rgb(204,229,204)"},"metadata":{}},{"type":"bedgraph","name":"SD4-AWT","url":"https://friedr05.u.hpc.mssm.edu/links_to_bioinformatics/linkstohg19RNA-Seq/SD4-AWT.bedgraph.gz","mode":1,"qtc":{"anglescale":1,"pr":0,"pg":0,"pb":230,"nr":255,"ng":0,"nb":0,"pth":"#000099","nth":"#800000","thtype":1,"thmin":0,"thmax":150,"thpercentile":90,"height":40,"summeth":1,"bg":"rgb(204,229,204)"},"metadata":{}},{"type":"bedgraph","name":"SD4-AKO","url":"https://friedr05.u.hpc.mssm.edu/links_to_bioinformatics/linkstohg19RNA-Seq/SD4-AKO.bedgraph.gz","mode":1,"qtc":{"anglescale":1,"pr":0,"pg":0,"pb":230,"nr":255,"ng":0,"nb":0,"pth":"#000099","nth":"#800000","thtype":1,"thmin":0,"thmax":150,"thpercentile":90,"height":40,"summeth":1,"bg":"rgb(204,229,204)"},"metadata":{}},{"type":"bedgraph","name":"SD4-WT1 (D1)","url":"https://friedr05.u.hpc.mssm.edu/links_to_bioinformatics/linkstohg19RNA-Seq/SD4D1.bedgraph.gz","mode":1,"qtc":{"anglescale":1,"pr":0,"pg":0,"pb":230,"nr":255,"ng":0,"nb":0,"pth":"#000099","nth":"#800000","thtype":1,"thmin":0,"thmax":300,"thpercentile":90,"height":40,"summeth":1,"bg":"rgb(255,219,219)"},"metadata":{}},{"type":"bedgraph","name":"SD4-WT2 (D11)","url":"https://friedr05.u.hpc.mssm.edu/links_to_bioinformatics/linkstohg19RNA-Seq/SD4D11.bedgraph.gz","mode":1,"qtc":{"anglescale":1,"pr":0,"pg":0,"pb":230,"nr":255,"ng":0,"nb":0,"pth":"#000099","nth":"#800000","thtype":1,"thmin":0,"thmax":300,"thpercentile":90,"height":40,"summeth":1,"bg":"rgb(255,219,219)"},"metadata":{}},{"type":"bedgraph","name":"SD4-WT3 (D12)","url":"https://friedr05.u.hpc.mssm.edu/links_to_bioinformatics/linkstohg19RNA-Seq/SD4D12.bedgraph.gz","mode":1,"qtc":{"anglescale":1,"pr":0,"pg":0,"pb":230,"nr":255,"ng":0,"nb":0,"pth":"#000099","nth":"#800000","thtype":1,"thmin":0,"thmax":300,"thpercentile":90,"height":40,"summeth":1,"bg":"rgb(255,219,219)"},"metadata":{}},{"type":"bedgraph","name":"SD4-KO1 (D5)","url":"https://friedr05.u.hpc.mssm.edu/links_to_bioinformatics/linkstohg19RNA-Seq/SD4D5.bedgraph.gz","mode":1,"qtc":{"anglescale":1,"pr":0,"pg":0,"pb":230,"nr":255,"ng":0,"nb":0,"pth":"#000099","nth":"#800000","thtype":1,"thmin":0,"thmax":300,"thpercentile":90,"height":40,"summeth":1,"bg":"rgb(255,219,219)"},"metadata":{}},{"type":"bedgraph","name":"SD4-KO2 (D7)","url":"https://friedr05.u.hpc.mssm.edu/links_to_bioinformatics/linkstohg19RNA-Seq/SD4S7.bedgraph.gz","mode":1,"qtc":{"anglescale":1,"pr":0,"pg":0,"pb":230,"nr":255,"ng":0,"nb":0,"pth":"#000099","nth":"#800000","thtype":1,"thmin":0,"thmax":300,"thpercentile":90,"height":40,"summeth":1,"bg":"rgb(255,219,219)"},"metadata":{}},{"type":"bedgraph","name":"SD4-KO3 (D9)","url":"https://friedr05.u.hpc.mssm.edu/links_to_bioinformatics/linkstohg19RNA-Seq/SD4D9.bedgraph.gz","mode":1,"qtc":{"anglescale":1,"pr":0,"pg":0,"pb":230,"nr":255,"ng":0,"nb":0,"pth":"#000099","nth":"#800000","thtype":1,"thmin":0,"thmax":300,"thpercentile":90,"height":40,"summeth":1,"bg":"rgb(255,219,219)"},"metadata":{}},{"type":"native_track","list":[{"name":"rmsk_all","mode":7,"qtc":{"anglescale":1,"pr":255,"pg":0,"pb":0,"nr":0,"ng":0,"nb":230,"pth":"#800000","nth":"#000099","thtype":0,"thmin":0,"thmax":10,"thpercentile":95,"height":35,"summeth":1,"textcolor":"#000000","fontsize":"8pt","fontfamily":"sans-serif","fontbold":false,"bedcolor":"#336666"},"showscoreidx":2,"scorenamelst":["Smith-Waterman score","SW score normalized by length","1-divergence%"],"scorescalelst":[{"type":0},{"type":0},{"type":0}],"metadata":{},"categories":{"1":["SINE - short interspersed nuclear elements","#cc0000"],"2":["LINE - long interspersed nuclear element","#FF6600"],"3":["LTR - long terminal repeat element","#006600"],"4":["DNA transposon","#4A72E8"],"5":["Simple repeat, micro-satellite","#AB833B"],"6":["Satellite repeat","#660000"],"7":["Low complexity repeat","#663333"],"8":["RNA repeat","#cc33ff"],"9":["Other repeats","#488E8E"],"10":["Unknown","#5C5C5C"],"-1":["no information","transparent"]}},{"name":"refGene","mode":3,"qtc":{"anglescale":1,"pr":255,"pg":0,"pb":0,"nr":0,"ng":0,"nb":230,"pth":"#800000","nth":"#000099","thtype":0,"thmin":0,"thmax":10,"thpercentile":95,"height":50,"summeth":1,"textcolor":"#000000","fontsize":"8pt","fontfamily":"sans-serif","fontbold":false,"bedcolor":"#002EB8"},"metadata":{},"details":{"source":"UCSC Genome Browser","download date":"Jan 1, 2012"}}]},{"type":"metadata","vocabulary_set":{}},{"type":"coordinate_override","coord":"chr22,50708536,chr22,50750870"}]