[{"type":"bigwig","name":"Stanford ChipSeq GM12878 SMC3","url":"http://egg.wustl.edu/d/hg19/GSM935376_1.bigWig","mode":1,"qtc":{"anglescale":1,"pr":75,"pg":0,"pb":130,"nr":255,"ng":0,"nb":0,"pth":"rgb(75, 0, 130)","nth":"#800000","thtype":1,"thmin":4,"thmax":10,"thpercentile":90,"height":18,"summeth":1},"metadata":{"md1":["13047"],"md3":["24613"],"md4":["30018"]},"geolst":["GSM935376"]},{"type":"bigwig","name":"Bernstein GM12878 CTCF","url":"http://egg.wustl.edu/d/hg19/GSM733752_1.bigWig","mode":1,"qtc":{"anglescale":1,"pr":220,"pg":20,"pb":60,"nr":255,"ng":0,"nb":0,"pth":"rgb(220, 20, 60)","nth":"#800000","thtype":1,"thmin":3,"thmax":4,"thpercentile":90,"height":19,"summeth":1},"metadata":{"md1":["13047"],"md3":["24001"],"md4":["30003"]},"geolst":["GSM733752"]},{"type":"bigwig","name":"Bernstein GM12878 H3K27ac","url":"http://egg.wustl.edu/d/hg19/GSM733771_1.bigWig","mode":1,"qtc":{"anglescale":1,"pr":255,"pg":165,"pb":0,"nr":255,"ng":0,"nb":0,"pth":"rgb(255, 165, 0)","nth":"#800000","thtype":1,"thmin":3,"thmax":6,"thpercentile":90,"height":19,"summeth":1},"metadata":{"md1":["13047"],"md3":["22019"],"md4":["30003"]},"geolst":["GSM733771"]},{"type":"categorical","name":"GM12878 chromatin state","url":"http://egg.wustl.edu/d/hg19/wgEncodeBroadHmmGm12878HMM.gz","mode":1,"qtc":{"anglescale":1,"height":15},"metadata":{"md1":["13047"],"md3":["27004"],"md4":["30003"]},"categories":{"1":["Active promoter","#ff0000"],"2":["Weak promoter","#ff6969"],"3":["Inactive/poised promoter","#cf0bc6"],"4":["Strong enhancer","#faca00"],"5":["Strong enhancer","#faca00"],"6":["Weak enhancer","#fffc04"],"7":["Weak enhancer","#fffc04"],"8":["Insulator","#0abefe"],"9":["Transcriptional transition","#00b050"],"10":["Transcriptional elongation","#00b050"],"11":["Weak transcribed","#99ff66"],"12":["Polycomb-repressed","#7f7f7f"],"13":["Heterochromatin, low signal","#f5f5f5"],"14":["Repetitive/CNV","#f5f5f5"],"15":["Repetitive/CNV","#f5f5f5"],"-1":["no information","transparent"]},"geolst":["GSM936082"]},{"type":"bed","name":"Ref_003_summits.bed","url":"http://epigenomegateway.wustl.edu/browser/t/1662104673.txt.gz","mode":6,"qtc":{"anglescale":1,"pr":0,"pg":0,"pb":255,"nr":0,"ng":0,"nb":230,"pth":"rgb(0, 0, 255)","nth":"#000099","thtype":1,"thmin":0,"thmax":0.5,"thpercentile":95,"height":23,"summeth":1,"textcolor":"#000000","fontsize":"8pt","fontfamily":"sans-serif","fontbold":false,"bedcolor":"#336666"},"metadata":{}},{"type":"bed","name":"Risk_008_summits.bed","url":"http://epigenomegateway.wustl.edu/browser/t/2031479080.txt.gz","mode":6,"qtc":{"anglescale":1,"pr":255,"pg":0,"pb":0,"nr":0,"ng":0,"nb":230,"pth":"rgb(255, 0, 0)","nth":"#000099","thtype":1,"thmin":0,"thmax":0.5,"thpercentile":95,"height":24,"summeth":1,"textcolor":"#000000","fontsize":"8pt","fontfamily":"sans-serif","fontbold":false,"bedcolor":"#336666"},"metadata":{}},{"type":"bed","name":"Risk_shNR2F2_summits.bed","url":"http://epigenomegateway.wustl.edu/browser/t/535058664.txt.gz","mode":6,"qtc":{"anglescale":1,"pr":75,"pg":0,"pb":130,"nr":0,"ng":0,"nb":230,"pth":"rgb(75, 0, 130)","nth":"#000099","thtype":1,"thmin":0,"thmax":1,"thpercentile":95,"height":23,"summeth":1,"textcolor":"#000000","fontsize":"8pt","fontfamily":"sans-serif","fontbold":false,"bedcolor":"#336666"},"metadata":{}},{"type":"bed","name":"sign sort LOG2 FC shNR2F2 RISK REF sh008_003.txt","url":"http://epigenomegateway.wustl.edu/browser/t/346652038.txt.gz","mode":6,"qtc":{"anglescale":1,"pr":138,"pg":43,"pb":226,"nr":0,"ng":0,"nb":230,"pth":"rgb(138, 43, 226)","nth":"#000099","thtype":1,"thmin":0,"thmax":1,"thpercentile":95,"height":20,"summeth":1,"textcolor":"#000000","fontsize":"8pt","fontfamily":"sans-serif","fontbold":false,"bedcolor":"#336666"},"metadata":{}},{"type":"interaction","name":"Reference ChIA-PET rep 2.txt","url":"http://epigenomegateway.wustl.edu/browser/t/1113357942.txt.gz","mode":3,"qtc":{"anglescale":1,"textcolor":"#000000","thtype":1,"fontsize":"8pt","fontfamily":"sans-serif","fontbold":false,"pr":0,"pg":0,"pb":255,"nr":0,"ng":99,"nb":133,"pcolorscore":1,"ncolorscore":0,"pfilterscore":0,"nfilterscore":0,"height":50},"metadata":{}},{"type":"interaction","name":"Risk ChIA-PET 2 rep 2.txt","url":"http://epigenomegateway.wustl.edu/browser/t/588738850.txt.gz","mode":3,"qtc":{"anglescale":1,"textcolor":"#000000","thtype":1,"fontsize":"8pt","fontfamily":"sans-serif","fontbold":false,"pr":255,"pg":0,"pb":0,"nr":0,"ng":99,"nb":133,"pcolorscore":1,"ncolorscore":0,"pfilterscore":0,"nfilterscore":0,"height":50},"metadata":{}},{"type":"interaction","name":"Risk KD plus ChIA-PET Risk minus.txt","url":"http://epigenomegateway.wustl.edu/browser/t/1761586506.txt.gz","mode":3,"qtc":{"anglescale":1,"textcolor":"#000000","thtype":1,"fontsize":"9pt","fontfamily":"sans-serif","fontbold":false,"pr":75,"pg":0,"pb":130,"nr":255,"ng":0,"nb":0,"pcolorscore":1,"ncolorscore":-1,"pfilterscore":0,"nfilterscore":-100000,"height":50},"metadata":{}},{"type":"native_track","list":[{"name":"refGene","mode":3,"qtc":{"anglescale":1,"pr":255,"pg":0,"pb":0,"nr":0,"ng":0,"nb":230,"pth":"#800000","nth":"#000099","thtype":0,"thmin":0,"thmax":10,"thpercentile":95,"height":50,"summeth":1,"textcolor":"#000000","fontsize":"8pt","fontfamily":"sans-serif","fontbold":false,"bedcolor":"#002EB8"},"metadata":{},"details":{"source":"UCSC Genome Browser","download date":"Jan 1, 2012"}}]},{"type":"interaction","name":"Reference ChIA-PET plus Risk minus.txt","url":"http://epigenomegateway.wustl.edu/browser/t/1068332300.txt.gz","mode":"hide","qtc":{"pfilterscore":0,"nfilterscore":0,"pcolorscore":0,"ncolorscore":0,"pr":0,"pg":0,"pb":255,"nr":255,"ng":0,"nb":0,"height":50},"metadata":{}},{"type":"interaction","name":"Reference ChIA-PET plus Risk minus.txt","url":"http://epigenomegateway.wustl.edu/browser/t/1712439727.txt.gz","mode":"hide","qtc":{"pfilterscore":1,"nfilterscore":-10000,"pcolorscore":1,"ncolorscore":0,"pr":0,"pg":0,"pb":255,"thtype":1,"height":50},"metadata":{}},{"type":"interaction","name":"Risk KD plus ChIA-PET Reference minus.txt","url":"http://epigenomegateway.wustl.edu/browser/t/214199912.txt.gz","mode":"hide","qtc":{"pfilterscore":0,"nfilterscore":0,"pcolorscore":0,"ncolorscore":0},"metadata":{}},{"type":"metadata","vocabulary_set":{"md1":"http://vizhub.wustl.edu/metadata/human/Samples","md2":"http://vizhub.wustl.edu/metadata/human/Donor","md3":"http://vizhub.wustl.edu/metadata/Experimental_assays","md4":"http://vizhub.wustl.edu/metadata/Institutions"},"show_terms":{"md1":["Sample"],"md3":["Assay"]}},{"type":"splinters","list":["chr4:80747859-113834982","chr8:82592838-82916757"]},{"type":"coordinate_override","coord":"chr6,110573863,chr6,146522756"}]