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The RNA was purified using 66 l SPRI beads (Agencourt) and eluted in 11 l 10 mM Tris buffer pH 8.0.","rna_preparation_5'_phosphorylation":"Phosphorylation was performed by addition of 10 U PNK (New England Biolabs), 1 mM ATP, and 20 U RNaseOut  (Life Technologies) and incubation at 37C for 1 h.","rna_preparation_3'_rna_adapter_ligation_protocol":"1 l of 1:10 diluted adenylated 3 RNA adapter oligonucleotide was added to the phosphorylated RNA and incubated at 70C for 2 min followed by placement on ice. The 3 RNA adapter ligation reaction was performed by addition of 2 l 10x T4 RNA ligase 2 truncated ligation buffer, 1.6 l 100 mM MgCl2, 20 U RNaseOut and 300 U T4 RNA ligase 2 truncated (New England Biolabs) and incubation at 22C for 1 h.","rna_preparation_5'_rna_adapter_ligation_protocol":"Ligation of the 5 RNA adapter was performed by addition to the 3 adapter ligated reaction of 1 l 1:1 diluted, heat denatured (70C 2 min) 5 RNA adapter oligonucleotide, 1 l 10 mM ATP, and 10 U T4 RNA ligase (Promega), and incubation at 20C for 1 h. RNA was purified using 66 l SPRI beads and eluted in 10 l 10 mM Tris buffer pH 8.0.","rna_preparation_reverse_transcription_protocol":"To the RNA ligation products, 2 l 1:5 diluted RT primer was added and heat denatured (70C 2 min), followed by incubation on ice. Added to the denatured RNA/primer solution was 4 l 5x first strand buffer, 1 l 12.5 mM dNTPs, 2 l 100 mM DTT, and 40 U RNaseOut, followed by incubation at 48C for 1 min. To this, 200 U Superscript II reverse transcriptase (Life Technologies) was added, followed by incubation at 44C for 1 h.","library_generation_pcr_template":"The entire reverse transcription reaction was used in the PCR enrichment of the library.","library_generation_pcr_polymerase_type":"Phusion hot-start high fidelity DNA polymerase (New England Biolabs). 1x Phusion polymerase buffer and 4 U Phusion hot-start high fidelity DNA polymerase was used in a 100 l reaction.","library_generation_pcr_thermocycling_program":"98C 30 sec, 98C 10 sec, 60C 30 sec, 72C 15 sec, 72C 10 min","library_generation_pcr_number_cycles":"15","library_generation_pcr_f_primer_sequence":"5' AATGATACGGCGACCACCGACAGGTTCAGAGTTCTACAGTCCGA","library_generation_pcr_r_primer_sequence":"5' CAAGCAGAAGACGGCATACGA","library_generation_pcr_primer_conc":"0.25 M","library_generation_pcr_product_isolation_protocol":"PCR products were purified in two steps, first by purification using 180 l SPRI beads and elution in 30 l 10 mM Tris buffer pH 8.0, followed by purification with 39 l SPRI beads and elution in 10 l 10 mM Tris buffer pH 8.0.","original_filename":"GSM438363_UCSD.IMR90.mRNA-Seq.mRNA-seq_imr90_r1.bigWig"},"geolst":["GSM438363"]},{"type":"bigWig","name":"ChIP-Seq input of IMR90 (fetal lung fibroblast)","url":"http://egg.wustl.edu/d/hg19/GSM521926.bigWig","public":true,"mode":"show","qtc":{"anglescale":1,"pr":0,"pg":0,"pb":255,"nr":255,"ng":0,"nb":0,"pth":"#ffff00","nth":"#800000","thtype":0,"thmin":0,"thmax":10,"thpercentile":90,"height":17,"summeth":1,"smooth":7},"annotation":["11310","22001","30002"],"details":{"molecule":"genomic DNA"," disease":"None","biomaterial_provider":"ATCC","biomaterial_type":"Cell Line","line":"IMR90","lineage":"NA","batch":"1","differentiation_stage":"Fetal lung fibroblast","differentiation_method":"NA","passage":"4","medium":"Minimum Essential Medium, Eagle with Earle's Balanced Salt Solution supplemented with 10% Fetal Bovine Serum (FBS), 1% Pen/Strep (penicillin, streptomycin), 1% GlutaMax (stable form of glutamine)","Sex":"Female","experiment_type":"ChIP-Seq Input","extraction_protocol":"See","extraction_protocol_type_of_sonicator":"Branson Tip Sonicator","extraction_protocol_sonication_cycles":"30","chip_protocol":"Input","chip_protocol_chromatin_amount":"500 micrograms","original_filename":"GSM521926_UCSD.IMR90.Input.LL-I1.bigWig","Embargo end date":"2010-12-22"},"geolst":["GSM521926"]},{"type":"bigWig","name":"Digital Genomic Footprinting of IMR90 (fetal lung fibroblast)","url":"http://egg.wustl.edu/d/hg19/GSM723024_0.bigWig","public":true,"mode":"show","qtc":{"anglescale":1,"pr":0,"pg":0,"pb":255,"nr":255,"ng":0,"nb":0,"pth":"#ffff00","nth":"#800000","thtype":0,"thmin":0,"thmax":10,"thpercentile":90,"height":17,"summeth":1,"smooth":7},"annotation":["11310","23002","30004"],"details":{"sample_alias":"IMR90","sample_common_name":"IMR90 Cell Line","molecule":"genomic DNA","disease":"None","biomaterial_provider":"ATCC","biomaterial_type":"Cell Line","line":"IMR90","lineage":"NA","differentiation_stage":"Fetal lung fibroblast","differentiation_method":"NA","passage":"4","medium":"Eagle's Minimum Essential Medium, Catalog No. 30-2003.","Sex":"Female","batch":"CCL-186","experiment_type":"Digital Genomic Footprinting","extraction_protocol":"Qiagen minElut","dnase_protocol":"Stamlab DNase Protocol, Sabo, P. 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