[{"type":"categorical","name":"chromHMM of Fetal Brain","url":"http://egg.wustl.edu/d/hg19/E082_15_coreMarks_dense.gz","mode":1,"qtc":{"anglescale":1,"height":15},"metadata":{"md1":["12003"],"md3":["27004"],"md4":["30014"]},"categories":{"1":["Active TSS","#ff0000"],"2":["Flanking Active TSS","#ff4500"],"3":["Transcr at gene 5' and 3'","#32cd32"],"4":["Strong transcription","#008000"],"5":["Weak transcription","#006400"],"6":["Genic enhancers","#c2e105"],"7":["Enhancers","#ffff00"],"8":["ZNF genes & repeats","#66cdaa"],"9":["Heterochromatin","#8a91d0"],"10":["Bivalent/Poised TSS","#cd5c5c"],"11":["Flanking Bivalent TSS/Enh","#e9967a"],"12":["Bivalent Enhancer","#bdb76b"],"13":["Repressed PolyComb","#808080"],"14":["Weak Repressed PolyComb","#c0c0c0"],"15":["Quiescent/Low","#ffffff"],"-1":["no information","transparent"]}},{"type":"categorical","name":"chromHMM of Neurospheres  Cortex Derived","url":"http://egg.wustl.edu/d/hg19/E053_15_coreMarks_dense.gz","mode":1,"qtc":{"anglescale":1,"height":15},"metadata":{"md1":["13033"],"md3":["27004"],"md4":["30014"]},"categories":{"1":["Active TSS","#ff0000"],"2":["Flanking Active TSS","#ff4500"],"3":["Transcr at gene 5' and 3'","#32cd32"],"4":["Strong transcription","#008000"],"5":["Weak transcription","#006400"],"6":["Genic enhancers","#c2e105"],"7":["Enhancers","#ffff00"],"8":["ZNF genes & repeats","#66cdaa"],"9":["Heterochromatin","#8a91d0"],"10":["Bivalent/Poised TSS","#cd5c5c"],"11":["Flanking Bivalent TSS/Enh","#e9967a"],"12":["Bivalent Enhancer","#bdb76b"],"13":["Repressed PolyComb","#808080"],"14":["Weak Repressed PolyComb","#c0c0c0"],"15":["Quiescent/Low","#ffffff"],"-1":["no information","transparent"]}},{"type":"categorical","name":"chromHMM of Neurospheres  Ganglionic Eminence Derived","url":"http://egg.wustl.edu/d/hg19/E054_15_coreMarks_dense.gz","mode":1,"qtc":{"anglescale":1,"height":15},"metadata":{"md1":["13031"],"md3":["27004"],"md4":["30014"]},"categories":{"1":["Active TSS","#ff0000"],"2":["Flanking Active TSS","#ff4500"],"3":["Transcr at gene 5' and 3'","#32cd32"],"4":["Strong transcription","#008000"],"5":["Weak transcription","#006400"],"6":["Genic enhancers","#c2e105"],"7":["Enhancers","#ffff00"],"8":["ZNF genes & repeats","#66cdaa"],"9":["Heterochromatin","#8a91d0"],"10":["Bivalent/Poised TSS","#cd5c5c"],"11":["Flanking Bivalent TSS/Enh","#e9967a"],"12":["Bivalent Enhancer","#bdb76b"],"13":["Repressed PolyComb","#808080"],"14":["Weak Repressed PolyComb","#c0c0c0"],"15":["Quiescent/Low","#ffffff"],"-1":["no information","transparent"]}},{"type":"categorical","name":"chromHMM of Brain Cingulate Gyrus","url":"http://egg.wustl.edu/d/hg19/E069_15_coreMarks_dense.gz","mode":1,"qtc":{"anglescale":1,"height":15},"metadata":{"md1":["13041"],"md3":["27004"],"md4":["30003"]},"categories":{"1":["Active TSS","#ff0000"],"2":["Flanking Active TSS","#ff4500"],"3":["Transcr at gene 5' and 3'","#32cd32"],"4":["Strong transcription","#008000"],"5":["Weak transcription","#006400"],"6":["Genic enhancers","#c2e105"],"7":["Enhancers","#ffff00"],"8":["ZNF genes & repeats","#66cdaa"],"9":["Heterochromatin","#8a91d0"],"10":["Bivalent/Poised TSS","#cd5c5c"],"11":["Flanking Bivalent TSS/Enh","#e9967a"],"12":["Bivalent Enhancer","#bdb76b"],"13":["Repressed PolyComb","#808080"],"14":["Weak Repressed PolyComb","#c0c0c0"],"15":["Quiescent/Low","#ffffff"],"-1":["no information","transparent"]}},{"type":"categorical","name":"chromHMM of Brain Anterior Caudate","url":"http://egg.wustl.edu/d/hg19/E068_15_coreMarks_dense.gz","mode":1,"qtc":{"anglescale":1,"height":15},"metadata":{"md1":["13040"],"md3":["27004"],"md4":["30003"]},"categories":{"1":["Active TSS","#ff0000"],"2":["Flanking Active TSS","#ff4500"],"3":["Transcr at gene 5' and 3'","#32cd32"],"4":["Strong transcription","#008000"],"5":["Weak transcription","#006400"],"6":["Genic enhancers","#c2e105"],"7":["Enhancers","#ffff00"],"8":["ZNF genes & repeats","#66cdaa"],"9":["Heterochromatin","#8a91d0"],"10":["Bivalent/Poised TSS","#cd5c5c"],"11":["Flanking Bivalent TSS/Enh","#e9967a"],"12":["Bivalent Enhancer","#bdb76b"],"13":["Repressed PolyComb","#808080"],"14":["Weak Repressed PolyComb","#c0c0c0"],"15":["Quiescent/Low","#ffffff"],"-1":["no information","transparent"]}},{"type":"bigwig","name":"H3K4me3 of Fetal Brain","url":"http://egg.wustl.edu/d/hg19/GSM806935_0.bigWig","mode":1,"qtc":{"anglescale":1,"pr":0,"pg":117,"pb":0,"nr":255,"ng":0,"nb":0,"pth":"rgb(0,81,0)","nth":"#800000","thtype":0,"thmin":0,"thmax":10,"thpercentile":90,"height":10,"summeth":1},"metadata":{"md1":["12003"],"md2":["40116","60002","70009"],"md3":["22009"],"md4":["30014"]},"geolst":["GSM806935"]},{"type":"bigwig","name":"H3K4me3 of Neurospheres  Ganglionic Eminence Derived","url":"http://egg.wustl.edu/d/hg19/GSM707009_0.bigWig","mode":1,"qtc":{"anglescale":1,"pr":0,"pg":117,"pb":0,"nr":255,"ng":0,"nb":0,"pth":"rgb(0,81,0)","nth":"#800000","thtype":0,"thmin":0,"thmax":10,"thpercentile":90,"height":10,"summeth":1},"metadata":{"md1":["13031"],"md2":["40116","60002","70009"],"md3":["22009"],"md4":["30014"]},"geolst":["GSM707009"]},{"type":"bigwig","name":"H3K9me3 of Fetal Brain","url":"http://egg.wustl.edu/d/hg19/GSM916054_1.bigWig","mode":1,"qtc":{"anglescale":1,"pr":159,"pg":0,"pb":72,"nr":255,"ng":0,"nb":0,"pth":"rgb(111,0,50)","nth":"#800000","thtype":0,"thmin":0,"thmax":10,"thpercentile":90,"height":10,"summeth":1},"metadata":{"md1":["12003"],"md2":["40180","60003","70009"],"md3":["22012"],"md4":["30003"]},"geolst":["GSM916054"]},{"type":"bigwig","name":"H3K9me3 of Neurospheres  Ganglionic Eminence Derived","url":"http://egg.wustl.edu/d/hg19/GSM1127079_1.bigWig","mode":1,"qtc":{"anglescale":1,"pr":159,"pg":0,"pb":72,"nr":255,"ng":0,"nb":0,"pth":"rgb(111,0,50)","nth":"#800000","thtype":0,"thmin":0,"thmax":10,"thpercentile":90,"height":10,"summeth":1},"metadata":{"md1":["13031"],"md2":["40203"],"md3":["22012"],"md4":["30014"]},"geolst":["GSM1127079"]},{"type":"bigwig","name":"H3K27me3 of Fetal Brain","url":"http://egg.wustl.edu/d/hg19/GSM806937_0.bigWig","mode":1,"qtc":{"anglescale":1,"pr":180,"pg":0,"pb":0,"nr":255,"ng":0,"nb":0,"pth":"rgb(125,0,0)","nth":"#800000","thtype":0,"thmin":0,"thmax":10,"thpercentile":90,"height":10,"summeth":1},"metadata":{"md1":["12003"],"md2":["40116","60002","70009"],"md3":["22018"],"md4":["30014"]},"geolst":["GSM806937"]},{"type":"bigwig","name":"H3K27me3 of Neurospheres  Ganglionic Eminence Derived","url":"http://egg.wustl.edu/d/hg19/GSM707011_0.bigWig","mode":1,"qtc":{"anglescale":1,"pr":180,"pg":0,"pb":0,"nr":255,"ng":0,"nb":0,"pth":"rgb(125,0,0)","nth":"#800000","thtype":0,"thmin":0,"thmax":10,"thpercentile":90,"height":10,"summeth":1},"metadata":{"md1":["13031"],"md2":["40116","60002","70009"],"md3":["22018"],"md4":["30014"]},"geolst":["GSM707011"]},{"type":"bigwig","name":"RNA-Seq of Fetal Brain","url":"http://egg.wustl.edu/d/hg19/GSM817250.bigWig","mode":1,"qtc":{"anglescale":1,"pr":0,"pg":0,"pb":230,"nr":255,"ng":0,"nb":0,"pth":"#000099","nth":"#800000","thtype":0,"thmin":0,"thmax":10,"thpercentile":90,"height":10,"summeth":1},"metadata":{"md1":["12003"],"md2":["40116","60002","70009"],"md3":["25002"],"md4":["30014"]},"geolst":["GSM817250"]},{"type":"bigwig","name":"RNA-Seq of Neurospheres  Cortex Derived","url":"http://egg.wustl.edu/d/hg19/GSM958176_1.bigWig","mode":1,"qtc":{"anglescale":1,"pr":0,"pg":0,"pb":230,"nr":255,"ng":0,"nb":0,"pth":"#000099","nth":"#800000","thtype":0,"thmin":0,"thmax":10,"thpercentile":90,"height":10,"summeth":1},"metadata":{"md1":["13033"],"md2":["40203","60003","70009"],"md3":["25002"],"md4":["30014"]},"geolst":["GSM958176"]},{"type":"bigwig","name":"RNA-Seq of Neurospheres  Ganglionic Eminence Derived","url":"http://egg.wustl.edu/d/hg19/GSM958172_1.bigWig","mode":1,"qtc":{"anglescale":1,"pr":0,"pg":0,"pb":230,"nr":255,"ng":0,"nb":0,"pth":"#000099","nth":"#800000","thtype":0,"thmin":0,"thmax":10,"thpercentile":90,"height":10,"summeth":1},"metadata":{"md1":["13031"],"md2":["40203","60003","70009"],"md3":["25002"],"md4":["30014"]},"geolst":["GSM958172"]},{"type":"native_track","list":[{"name":"refGene","mode":3,"qtc":{"anglescale":1,"pr":255,"pg":0,"pb":0,"nr":0,"ng":0,"nb":230,"pth":"#800000","nth":"#000099","thtype":0,"thmin":0,"thmax":10,"thpercentile":95,"height":50,"summeth":1,"textcolor":"#000000","fontsize":"8pt","fontfamily":"sans-serif","fontbold":false,"bedcolor":"#002EB8"},"metadata":{},"details":{"source":"UCSC Genome Browser","download date":"Jan 1, 2012"}},{"name":"cpgisland","mode":3,"qtc":{"anglescale":1,"pr":255,"pg":0,"pb":0,"nr":0,"ng":0,"nb":230,"pth":"#800000","nth":"#000099","thtype":0,"thmin":0,"thmax":10,"thpercentile":95,"height":50,"summeth":1,"textcolor":"#000000","fontsize":"8pt","fontfamily":"sans-serif","fontbold":false,"bedcolor":"#336666"},"metadata":{}},{"name":"rmsk_ensemble","mode":1,"qtc":{"anglescale":1,"height":15},"metadata":{},"categories":{"1":["SINE - short interspersed nuclear elements","#cc0000"],"2":["LINE - long interspersed nuclear element","#FF6600"],"3":["LTR - long terminal repeat element","#006600"],"4":["DNA transposon","#4A72E8"],"5":["Simple repeat, micro-satellite","#AB833B"],"6":["Satellite repeat","#660000"],"7":["Low complexity repeat","#663333"],"8":["RNA repeat","#cc33ff"],"9":["Other repeats","#488E8E"],"10":["Unknown","#5C5C5C"],"-1":["no information","transparent"]}}]},{"type":"bigwig","name":"DNase hypersensitivity of Fetal_Ovary","url":"http://egg.wustl.edu/d/hg19/GSM1027306_1.bigWig","mode":"hide","qtc":{"anglescale":1,"pr":0,"pg":77,"pb":0,"nr":255,"ng":0,"nb":0,"pth":"rgb(0,53,0)","nth":"#800000","thtype":0,"thmin":0,"thmax":10,"thpercentile":90,"height":10,"summeth":1},"metadata":{"md1":["12239"],"md2":["40386"],"md3":["23001"],"md4":["30004"]},"geolst":["GSM1027306"]},{"type":"bigwig","name":"DNase hypersensitivity of Ovary","url":"http://egg.wustl.edu/d/hg19/GSM1027334_1.bigWig","mode":"hide","qtc":{"anglescale":1,"pr":0,"pg":77,"pb":0,"nr":255,"ng":0,"nb":0,"pth":"rgb(0,53,0)","nth":"#800000","thtype":0,"thmin":0,"thmax":10,"thpercentile":90,"height":10,"summeth":1},"metadata":{"md1":["13302"],"md2":["40271"],"md3":["23001"],"md4":["30004"]},"geolst":["GSM1027334"]},{"type":"bigwig","name":"DNase hypersensitivity of Fetal Testes","url":"http://egg.wustl.edu/d/hg19/GSM878617.bigWig","mode":"hide","qtc":{"anglescale":1,"pr":0,"pg":77,"pb":0,"nr":255,"ng":0,"nb":0,"pth":"rgb(0,53,0)","nth":"#800000","thtype":0,"thmin":0,"thmax":10,"thpercentile":90,"height":10,"summeth":1},"metadata":{"md1":["12199"],"md2":["40177","60001","70009"],"md3":["23001"],"md4":["30004"]},"geolst":["GSM878617"]},{"type":"bigwig","name":"DNase hypersensitivity of Fetal Testes","url":"http://egg.wustl.edu/d/hg19/GSM1027319_1.bigWig","mode":"hide","qtc":{"anglescale":1,"pr":0,"pg":77,"pb":0,"nr":255,"ng":0,"nb":0,"pth":"rgb(0,53,0)","nth":"#800000","thtype":0,"thmin":0,"thmax":10,"thpercentile":90,"height":10,"summeth":1},"metadata":{"md1":["12199"],"md2":["40331"],"md3":["23001"],"md4":["30004"]},"geolst":["GSM1027319"]},{"type":"bedgraph","name":"ChIP-Seq input of Ovary","url":"http://egg.wustl.edu/d/hg19/GSM1013171_1.gz","mode":"hide","qtc":{"anglescale":1,"pr":0,"pg":0,"pb":200,"nr":255,"ng":0,"nb":0,"pth":"rgb(0,0,140)","nth":"#800000","thtype":0,"thmin":0,"thmax":10,"thpercentile":90,"height":10,"summeth":1},"metadata":{"md1":["13302"],"md2":["40271"],"md3":["22001"],"md4":["30002"]},"geolst":["GSM1013171"]},{"type":"bedgraph","name":"H3K36me3 of Ovary","url":"http://egg.wustl.edu/d/hg19/GSM1013143_1.gz","mode":"hide","qtc":{"anglescale":1,"pr":33,"pg":97,"pb":11,"nr":255,"ng":0,"nb":0,"pth":"rgb(23,67,7)","nth":"#800000","thtype":0,"thmin":0,"thmax":10,"thpercentile":90,"height":10,"summeth":1},"metadata":{"md1":["13302"],"md2":["40271"],"md3":["22020"],"md4":["30002"]},"geolst":["GSM1013143"]},{"type":"bedgraph","name":"H3K9me3 of Ovary","url":"http://egg.wustl.edu/d/hg19/GSM1013162_1.gz","mode":"hide","qtc":{"anglescale":1,"pr":159,"pg":0,"pb":72,"nr":255,"ng":0,"nb":0,"pth":"rgb(111,0,50)","nth":"#800000","thtype":0,"thmin":0,"thmax":10,"thpercentile":90,"height":10,"summeth":1},"metadata":{"md1":["13302"],"md2":["40271"],"md3":["22012"],"md4":["30002"]},"geolst":["GSM1013162"]},{"type":"interaction","name":"CCHiC-HFF1-NS-R1","url":"http://egg.wustl.edu/d/hg19/CCHiC-HFF1-NS-R1.processed.gz","mode":"hide","qtc":{"anglescale":1,"textcolor":"#000000","thtype":0,"fontsize":"8pt","fontfamily":"sans-serif","fontbold":false,"pr":184,"pg":0,"pb":138,"nr":0,"ng":99,"nb":133,"pcolorscore":2,"ncolorscore":0,"pfilterscore":0,"nfilterscore":0,"height":10},"metadata":{"md1":["13122"],"md3":["27003"],"md4":["30031"]},"details":{"Publication":"Organization of the Mitotic Chromosome.Science 22 November 2013"},"geolst":["E-MTAB-1948"]},{"type":"interaction","name":"CCHiC-HFF1-M-R1","url":"http://egg.wustl.edu/d/hg19/CCHiC-HFF1-M-R1.processed.gz","mode":"hide","qtc":{"anglescale":1,"textcolor":"#000000","thtype":0,"fontsize":"8pt","fontfamily":"sans-serif","fontbold":false,"pr":184,"pg":0,"pb":138,"nr":0,"ng":99,"nb":133,"pcolorscore":2,"ncolorscore":0,"pfilterscore":0,"nfilterscore":0,"height":10},"metadata":{"md1":["13122"],"md3":["27003"],"md4":["30031"]},"details":{"Publication":"Organization of the Mitotic Chromosome.Science 22 November 2013"},"geolst":["E-MTAB-1948"]},{"type":"categorical","name":"chromHMM of Ovary","url":"http://egg.wustl.edu/d/hg19/E097_15_coreMarks_dense.gz","mode":"hide","qtc":{"anglescale":1,"height":15},"metadata":{"md1":["13302"],"md3":["27004"],"md4":["30002"]},"categories":{"1":["Active TSS","#ff0000"],"2":["Flanking Active TSS","#ff4500"],"3":["Transcr at gene 5' and 3'","#32cd32"],"4":["Strong transcription","#008000"],"5":["Weak transcription","#006400"],"6":["Genic enhancers","#c2e105"],"7":["Enhancers","#ffff00"],"8":["ZNF genes & repeats","#66cdaa"],"9":["Heterochromatin","#8a91d0"],"10":["Bivalent/Poised TSS","#cd5c5c"],"11":["Flanking Bivalent TSS/Enh","#e9967a"],"12":["Bivalent Enhancer","#bdb76b"],"13":["Repressed PolyComb","#808080"],"14":["Weak Repressed PolyComb","#c0c0c0"],"15":["Quiescent/Low","#ffffff"],"-1":["no information","transparent"]}},{"type":"bigwig","name":"RNA-Seq of Fetal_Ovary","url":"http://egg.wustl.edu/d/hg19/GSM1101662_1.bigWig","mode":"hide","qtc":{"anglescale":1,"pr":0,"pg":0,"pb":230,"nr":255,"ng":0,"nb":0,"pth":"#000099","nth":"#800000","thtype":0,"thmin":0,"thmax":10,"thpercentile":90,"height":10,"summeth":1},"metadata":{"md1":["12239"],"md2":["40386"],"md3":["25002"],"md4":["30004"]},"geolst":["GSM1101662"]},{"type":"bedgraph","name":"RNA-Seq of Ovary","url":"http://egg.wustl.edu/d/hg19/GSM1010948_1.gz","mode":"hide","qtc":{"anglescale":1,"pr":0,"pg":0,"pb":230,"nr":255,"ng":0,"nb":0,"pth":"#000099","nth":"#800000","thtype":0,"thmin":0,"thmax":10,"thpercentile":90,"height":10,"summeth":1},"metadata":{"md1":["13302"],"md2":["40271"],"md3":["25002"],"md4":["30002"]},"geolst":["GSM1010948"]},{"type":"bedgraph","name":"H3K27ac of Ovary","url":"http://egg.wustl.edu/d/hg19/GSM956009_1.gz","mode":"hide","qtc":{"anglescale":1,"pr":0,"pg":0,"pb":150,"nr":255,"ng":0,"nb":0,"pth":"rgb(0,0,105)","nth":"#800000","thtype":0,"thmin":0,"thmax":10,"thpercentile":90,"height":10,"summeth":1},"metadata":{"md1":["13302"],"md2":["40271"],"md3":["22019"],"md4":["30002"]},"geolst":["GSM956009"]},{"type":"bedgraph","name":"H3K4me1 of Ovary","url":"http://egg.wustl.edu/d/hg19/GSM1013148_1.gz","mode":"hide","qtc":{"anglescale":1,"pr":0,"pg":133,"pb":66,"nr":255,"ng":0,"nb":0,"pth":"rgb(0,93,46)","nth":"#800000","thtype":0,"thmin":0,"thmax":10,"thpercentile":90,"height":10,"summeth":1},"metadata":{"md1":["13302"],"md2":["40271"],"md3":["22010"],"md4":["30002"]},"geolst":["GSM1013148"]},{"combinestrands":true,"scalebarheight":true,"tracks":{"forward":{"CG":{"color":"rgb(100,139,216)","bg":"#d9d9d9","url":"http://egg.wustl.edu/d/hg19/GSM1127117.fm.f.bedGraph.gz"},"ReadDepth":{"color":"#525252","url":"http://egg.wustl.edu/d/hg19/GSM1127117.rc.f.bedGraph.gz"}},"reverse":{"CG":{"color":"rgb(100,139,216)","bg":"#d9d9d9","url":"http://egg.wustl.edu/d/hg19/GSM1127117.fm.r.bedGraph.gz"},"ReadDepth":{"color":"#525252","url":"http://egg.wustl.edu/d/hg19/GSM1127117.rc.r.bedGraph.gz"}}},"type":"methylc","name":"methylC-Seq of Testis_Spermatozoa_Primary_Cells","mode":"hide","qtc":{"height":50,"smooth":11},"metadata":{"md1":["13304"],"md2":["40342"],"md3":["21004"],"md4":["30014"]},"geolst":["GSM1127119","GSM1127117"]},{"combinestrands":true,"scalebarheight":true,"tracks":{"forward":{"CG":{"color":"rgb(100,139,216)","bg":"#d9d9d9","url":"http://vizhub.wustl.edu/public/hg19/RoadmapFinalMethylation/WGBS/E097.fm.f.bedGraph.gz"},"ReadDepth":{"color":"#525252","url":"http://vizhub.wustl.edu/public/hg19/RoadmapFinalMethylation/WGBS/E097.rc.f.bedGraph.gz"}},"reverse":{"CG":{"color":"rgb(100,139,216)","bg":"#d9d9d9","url":"http://vizhub.wustl.edu/public/hg19/RoadmapFinalMethylation/WGBS/E097.fm.r.bedGraph.gz"},"ReadDepth":{"color":"#525252","url":"http://vizhub.wustl.edu/public/hg19/RoadmapFinalMethylation/WGBS/E097.rc.r.bedGraph.gz"}}},"type":"methylc","name":"methylC-Seq of Ovary","mode":"hide","qtc":{"height":70,"smooth":11},"metadata":{"md1":["13302"],"md3":["21004"],"md4":["30002"]}},{"type":"metadata","vocabulary_set":{"md1":"http://vizhub.wustl.edu/metadata/human/Samples","md2":"http://vizhub.wustl.edu/metadata/human/Donor","md3":"http://vizhub.wustl.edu/metadata/Experimental_assays","md4":"http://vizhub.wustl.edu/metadata/Institutions"},"show_terms":{"md1":["Sample"],"md3":["Assay"]}},{"type":"coordinate_override","coord":"chr19,13135394,chr19,13209609"}]