[{"type":"bam","name":"SRR891268.atac","url":"http://wangftp.wustl.edu/~jmaeng/atacseq_caller/SRR891268.filtered.sort.rmdup.atac.bam","mode":6,"qtc":{"anglescale":1,"pr":255,"pg":0,"pb":0,"nr":0,"ng":0,"nb":230,"pth":"#800000","nth":"#000099","thtype":0,"thmin":0,"thmax":20,"thpercentile":95,"height":50,"summeth":1,"textcolor":"#000000","fontsize":"8pt","fontfamily":"sans-serif","fontbold":false,"forwardcolor":"rgb(0,0,153)","reversecolor":"rgb(153,0,0)","mismatchcolor":"rgb(255,255,0)"},"metadata":{}},{"type":"bedgraph","name":"HTF","url":"http://wangftp.wustl.edu/~jmaeng/atacseq_caller/htf_coverage/SRR891268.atac.htf.bedgraph.gz","mode":1,"qtc":{"anglescale":1,"pr":5,"pg":153,"pb":0,"nr":255,"ng":0,"nb":0,"pth":"rgb(5, 153, 0)","nth":"#800000","thtype":1,"thmin":0,"thmax":20,"thpercentile":95,"height":40,"summeth":1},"metadata":{}},{"type":"bedgraph","name":"MACS2_chr1_2684300_3845100","url":"http://wangftp.wustl.edu/~jmaeng/atacseq_caller/htf_coverage/peaksizedist/SRR891268.atac_peaks.sample_chr1_2684301_3845100.bedgraph.gz","mode":1,"qtc":{"anglescale":1,"pr":224,"pg":101,"pb":230,"nr":255,"ng":0,"nb":0,"pth":"rgb(224, 101, 230)","nth":"#800000","thtype":1,"thmin":0,"thmax":1,"thpercentile":90,"height":40,"summeth":1},"metadata":{}},{"type":"bedgraph","name":"mg50_l33_5e-2","url":"http://wangftp.wustl.edu/~jmaeng/atacseq_caller/htf_coverage/peaksizedist/SRR891268.chr1_2684300_3845200.gzip2_Rresult_ZIPlearn.bypeak.mg.len33.5e_2.0based.bedgraph.gz","mode":1,"qtc":{"anglescale":1,"pr":225,"pg":204,"pb":68,"nr":225,"ng":204,"nb":68,"pth":"rgb(225, 204, 68)","nth":"rgb(225, 204, 68)","thtype":1,"thmin":0,"thmax":1,"thpercentile":90,"height":40,"summeth":1},"metadata":{}},{"type":"bigwig","name":"Duke DnaseSeq GM12878","url":"http://egg.wustl.edu/d/hg19/GSM816665_2.bigWig","mode":1,"qtc":{"anglescale":1,"pr":0,"pg":77,"pb":0,"nr":255,"ng":0,"nb":0,"pth":"rgb(0,53,0)","nth":"#800000","thtype":0,"thmin":0,"thmax":10,"thpercentile":90,"height":10,"summeth":1},"metadata":{"md1":["13047"],"md3":["23001"],"md4":["30019"]},"geolst":["GSM816665"]},{"type":"bigwig","name":"Duke DnaseSeq GM12878","url":"http://egg.wustl.edu/d/hg19/GSM816665_1.bigWig","mode":1,"qtc":{"anglescale":1,"pr":0,"pg":77,"pb":0,"nr":255,"ng":0,"nb":0,"pth":"rgb(0,53,0)","nth":"#800000","thtype":0,"thmin":0,"thmax":10,"thpercentile":90,"height":10,"summeth":1},"metadata":{"md1":["13047"],"md3":["23001"],"md4":["30019"]},"geolst":["GSM816665"]},{"type":"bigwig","name":"Stam GM12878 1","url":"http://egg.wustl.edu/d/hg19/GSM736496_1.bigWig","mode":1,"qtc":{"anglescale":1,"pr":0,"pg":77,"pb":0,"nr":255,"ng":0,"nb":0,"pth":"rgb(0,53,0)","nth":"#800000","thtype":0,"thmin":0,"thmax":10,"thpercentile":90,"height":10,"summeth":1},"metadata":{"md1":["13047"],"md3":["23001"],"md4":["30004"]},"geolst":["GSM736496"]},{"type":"bigwig","name":"Stam GM12878 2","url":"http://egg.wustl.edu/d/hg19/GSM736620_1.bigWig","mode":1,"qtc":{"anglescale":1,"pr":0,"pg":77,"pb":0,"nr":255,"ng":0,"nb":0,"pth":"rgb(0,53,0)","nth":"#800000","thtype":0,"thmin":0,"thmax":10,"thpercentile":90,"height":10,"summeth":1},"metadata":{"md1":["13047"],"md3":["23001"],"md4":["30004"]},"geolst":["GSM736620"]},{"type":"bigwig","name":"Bernstein GM12878 H3K27ac","url":"http://egg.wustl.edu/d/hg19/GSM733771_1.bigWig","mode":1,"qtc":{"anglescale":1,"pr":0,"pg":0,"pb":150,"nr":255,"ng":0,"nb":0,"pth":"rgb(0,0,105)","nth":"#800000","thtype":0,"thmin":0,"thmax":10,"thpercentile":90,"height":10,"summeth":1},"metadata":{"md1":["13047"],"md3":["22019"],"md4":["30003"]},"geolst":["GSM733771"]},{"type":"native_track","list":[{"name":"refGene","mode":3,"qtc":{"anglescale":1,"pr":255,"pg":0,"pb":0,"nr":0,"ng":0,"nb":230,"pth":"#800000","nth":"#000099","thtype":0,"thmin":0,"thmax":10,"thpercentile":95,"height":50,"summeth":1,"textcolor":"#000000","fontsize":"8pt","fontfamily":"sans-serif","fontbold":false,"bedcolor":"#002EB8","labelFontSize":9},"metadata":{},"details":{"source":"UCSC Genome Browser","download date":"Jan 1, 2012"}},{"name":"rmsk_all","mode":7,"qtc":{"anglescale":1,"pr":255,"pg":0,"pb":0,"nr":0,"ng":0,"nb":230,"pth":"#800000","nth":"#000099","thtype":0,"thmin":0,"thmax":10,"thpercentile":95,"height":35,"summeth":1,"textcolor":"#000000","fontsize":"8pt","fontfamily":"sans-serif","fontbold":false,"bedcolor":"#336666"},"showscoreidx":2,"scorenamelst":["Smith-Waterman score","SW score normalized by length","1-divergence%"],"scorescalelst":[{"type":0},{"type":0},{"type":0}],"metadata":{},"categories":{"1":["SINE - short interspersed nuclear elements","#cc0000"],"2":["LINE - long interspersed nuclear element","#FF6600"],"3":["LTR - long terminal repeat element","#006600"],"4":["DNA transposon","#4A72E8"],"5":["Simple repeat, micro-satellite","#AB833B"],"6":["Satellite repeat","#660000"],"7":["Low complexity repeat","#663333"],"8":["RNA repeat","#cc33ff"],"9":["Other repeats","#488E8E"],"10":["Unknown","#5C5C5C"],"-1":["no information","transparent"]}}]},{"type":"bedgraph","name":"Rconst_chr1_2684300_3845100","url":"http://wangftp.wustl.edu/~jmaeng/atacseq_caller/htf_coverage/peaksizedist/sample1M.result.param_s1M_constraint.bypeak.0based.bedgraph.gz","mode":"hide","qtc":{"anglescale":1,"pr":0,"pg":0,"pb":230,"nr":255,"ng":0,"nb":0,"pth":"#000099","nth":"#800000","thtype":1,"thmin":0,"thmax":1,"thpercentile":90,"height":40,"summeth":1},"metadata":{}},{"type":"bedgraph","name":"Rconst_ZIPspecified_chr1_2684300_3845100","url":"http://wangftp.wustl.edu/~jmaeng/atacseq_caller/htf_coverage/peaksizedist/sample1M.result.param_s1M_constraint_noC.bypeak.0based.bedgraph.gz","mode":"hide","qtc":{"anglescale":1,"pr":0,"pg":0,"pb":230,"nr":255,"ng":0,"nb":0,"pth":"#000099","nth":"#800000","thtype":1,"thmin":0,"thmax":1,"thpercentile":90,"height":40,"summeth":1},"metadata":{}},{"type":"bedgraph","name":"Rconst_t3_chr1_2684300_3845100","url":"http://wangftp.wustl.edu/~jmaeng/atacseq_caller/htf_coverage/peaksizedist/sample1M.result.param_s1M_constraint.bypeak.score3.0based.bedgraph.gz","mode":"hide","qtc":{"anglescale":1,"pr":0,"pg":134,"pb":230,"nr":255,"ng":0,"nb":0,"pth":"rgb(0, 134, 230)","nth":"#800000","thtype":1,"thmin":0,"thmax":1,"thpercentile":90,"height":40,"summeth":1},"metadata":{}},{"type":"bedgraph","name":"Rconst_ZIPspecified_t3_chr1_2684300_3845100","url":"http://wangftp.wustl.edu/~jmaeng/atacseq_caller/htf_coverage/peaksizedist/sample1M.result.param_s1M_constraint_noC.bypeak.score3.0based.bedgraph.gz","mode":"hide","qtc":{"anglescale":1,"pr":0,"pg":134,"pb":230,"nr":255,"ng":0,"nb":0,"pth":"rgb(0, 134, 230)","nth":"#800000","thtype":1,"thmin":0,"thmax":1,"thpercentile":90,"height":40,"summeth":1},"metadata":{}},{"type":"bedgraph","name":"Rconst_t5_chr1_2684300_3845100","url":"http://wangftp.wustl.edu/~jmaeng/atacseq_caller/htf_coverage/peaksizedist/sample1M.result.param_s1M_constraint.bypeak.score5.0based.bedgraph.gz","mode":"hide","qtc":{"anglescale":1,"pr":0,"pg":230,"pb":219,"nr":255,"ng":0,"nb":0,"pth":"rgb(0, 230, 219)","nth":"#800000","thtype":1,"thmin":0,"thmax":1,"thpercentile":90,"height":40,"summeth":1},"metadata":{}},{"type":"bedgraph","name":"Rconst_ZIPspecified_t5_chr1_2684300_3845100","url":"http://wangftp.wustl.edu/~jmaeng/atacseq_caller/htf_coverage/peaksizedist/sample1M.result.param_s1M_constraint_noC.bypeak.score5.0based.bedgraph.gz","mode":"hide","qtc":{"anglescale":1,"pr":0,"pg":230,"pb":219,"nr":255,"ng":0,"nb":0,"pth":"rgb(0, 230, 219)","nth":"#800000","thtype":1,"thmin":0,"thmax":1,"thpercentile":90,"height":40,"summeth":1},"metadata":{}},{"type":"bedgraph","name":"SRR891268.atac.insertionsite","url":"http://wangftp.wustl.edu/~jmaeng/atacseq_caller/insertion_pos/SRR891268.atac.insertionsite.0based.bedgraph.gz","mode":"hide","qtc":{"anglescale":1,"pr":0,"pg":0,"pb":230,"nr":255,"ng":0,"nb":0,"pth":"#000099","nth":"#800000","thtype":1,"thmin":0,"thmax":4,"thpercentile":90,"height":40,"summeth":1},"metadata":{}},{"type":"bedgraph","name":"blacklist_ENCODE","url":"http://wangftp.wustl.edu/~jmaeng/blacklist/wgEncodeDacMapabilityConsensusExcludable.bedgraph.gz","mode":"hide","qtc":{"anglescale":1,"pr":0,"pg":0,"pb":230,"nr":255,"ng":0,"nb":0,"pth":"#000099","nth":"#800000","thtype":1,"thmin":0,"thmax":1,"thpercentile":90,"height":40,"summeth":1},"metadata":{}},{"type":"bedgraph","name":"blacklist_JDB","url":"http://wangftp.wustl.edu/~jmaeng/blacklist/JDB_blacklist.hg19.bedgraph.gz","mode":"hide","qtc":{"anglescale":1,"pr":0,"pg":0,"pb":230,"nr":255,"ng":0,"nb":0,"pth":"#000099","nth":"#800000","thtype":1,"thmin":0,"thmax":1,"thpercentile":90,"height":40,"summeth":1},"metadata":{}},{"type":"metadata","vocabulary_set":{"md1":"http://vizhub.wustl.edu/metadata/human/Samples","md2":"http://vizhub.wustl.edu/metadata/human/Donor","md3":"http://vizhub.wustl.edu/metadata/Experimental_assays","md4":"http://vizhub.wustl.edu/metadata/Institutions"},"show_terms":{"md1":["Sample"],"md3":["Assay"]}},{"type":"coordinate_override","coord":"chr1,3588449,chr1,3591357"}]