[{"type":"bedgraph","name":"ChIP-Seq input of IMR90","url":"https://egg.wustl.edu/d/hg19/GSM959044_1.gz","mode":1,"qtc":{"anglescale":1,"pr":0,"pg":0,"pb":200,"nr":255,"ng":0,"nb":0,"pth":"rgb(0,0,140)","nth":"#800000","thtype":0,"thmin":0,"thmax":10,"thpercentile":90,"height":50,"summeth":1},"metadata":{"md1":["11310"],"md3":["22001"],"md4":["30002"]},"geolst":["GSM959044"]},{"type":"bedgraph","name":"H3K4me1 of IMR90","url":"https://egg.wustl.edu/d/hg19/GSM521897.gz","mode":1,"qtc":{"anglescale":1,"pr":0,"pg":133,"pb":66,"nr":255,"ng":0,"nb":0,"pth":"rgb(0,93,46)","nth":"#800000","thtype":0,"thmin":0,"thmax":10,"thpercentile":90,"height":50,"summeth":1},"metadata":{"md1":["11310"],"md3":["22010"],"md4":["30002"]},"geolst":["GSM521897"]},{"type":"bedgraph","name":"H3K4me1 of IMR90","url":"https://egg.wustl.edu/d/hg19/GSM521895.gz","mode":1,"qtc":{"anglescale":1,"pr":0,"pg":133,"pb":66,"nr":255,"ng":0,"nb":0,"pth":"rgb(0,93,46)","nth":"#800000","thtype":0,"thmin":0,"thmax":10,"thpercentile":90,"height":50,"summeth":1},"metadata":{"md1":["11310"],"md3":["22010"],"md4":["30002"]},"geolst":["GSM521895"]},{"type":"bedgraph","name":"H3K4me3 of IMR90","url":"https://egg.wustl.edu/d/hg19/GSM521901.gz","mode":1,"qtc":{"anglescale":1,"pr":0,"pg":117,"pb":0,"nr":255,"ng":0,"nb":0,"pth":"rgb(0,81,0)","nth":"#800000","thtype":0,"thmin":0,"thmax":10,"thpercentile":90,"height":50,"summeth":1},"metadata":{"md1":["11310"],"md3":["22009"],"md4":["30002"]},"geolst":["GSM521901"]},{"type":"bedgraph","name":"H3K4me3 of IMR90","url":"https://egg.wustl.edu/d/hg19/GSM469970.gz","mode":1,"qtc":{"anglescale":1,"pr":0,"pg":117,"pb":0,"nr":255,"ng":0,"nb":0,"pth":"rgb(0,81,0)","nth":"#800000","thtype":0,"thmin":0,"thmax":10,"thpercentile":90,"height":50,"summeth":1},"metadata":{"md1":["11310"],"md3":["22009"],"md4":["30002"]},"geolst":["GSM469970"]},{"type":"bedgraph","name":"H3K9me3 of IMR90","url":"https://egg.wustl.edu/d/hg19/GSM521913.gz","mode":1,"qtc":{"anglescale":1,"pr":159,"pg":0,"pb":72,"nr":255,"ng":0,"nb":0,"pth":"rgb(111,0,50)","nth":"#800000","thtype":0,"thmin":0,"thmax":10,"thpercentile":90,"height":50,"summeth":1},"metadata":{"md1":["11310"],"md3":["22012"],"md4":["30002"]},"geolst":["GSM521913"]},{"type":"bedgraph","name":"H3K9me3 of IMR90","url":"https://egg.wustl.edu/d/hg19/GSM469974.gz","mode":1,"qtc":{"anglescale":1,"pr":159,"pg":0,"pb":72,"nr":255,"ng":0,"nb":0,"pth":"rgb(111,0,50)","nth":"#800000","thtype":0,"thmin":0,"thmax":10,"thpercentile":90,"height":50,"summeth":1},"metadata":{"md1":["11310"],"md3":["22012"],"md4":["30002"]},"geolst":["GSM469974"]},{"type":"bedgraph","name":"H3K27me3 of IMR90","url":"https://egg.wustl.edu/d/hg19/GSM521889.gz","mode":1,"qtc":{"anglescale":1,"pr":180,"pg":0,"pb":0,"nr":255,"ng":0,"nb":0,"pth":"rgb(125,0,0)","nth":"#800000","thtype":0,"thmin":0,"thmax":10,"thpercentile":90,"height":50,"summeth":1},"metadata":{"md1":["11310"],"md3":["22018"],"md4":["30002"]},"geolst":["GSM521889"]},{"type":"bedgraph","name":"H3K27me3 of IMR90","url":"https://egg.wustl.edu/d/hg19/GSM469968.gz","mode":1,"qtc":{"anglescale":1,"pr":180,"pg":0,"pb":0,"nr":255,"ng":0,"nb":0,"pth":"rgb(125,0,0)","nth":"#800000","thtype":0,"thmin":0,"thmax":10,"thpercentile":90,"height":50,"summeth":1},"metadata":{"md1":["11310"],"md3":["22018"],"md4":["30002"]},"geolst":["GSM469968"]},{"type":"categorical","name":"chromHMM of IMR90","url":"https://egg.wustl.edu/d/hg19/E017_15_coreMarks_dense.gz","mode":1,"qtc":{"anglescale":1,"height":15},"metadata":{"md1":["11310"],"md3":["27004"],"md4":["30002"]},"categories":{"1":["Active TSS","#ff0000"],"2":["Flanking Active TSS","#ff4500"],"3":["Transcr at gene 5' and 3'","#32cd32"],"4":["Strong transcription","#008000"],"5":["Weak transcription","#006400"],"6":["Genic enhancers","#c2e105"],"7":["Enhancers","#ffff00"],"8":["ZNF genes & repeats","#66cdaa"],"9":["Heterochromatin","#8a91d0"],"10":["Bivalent/Poised TSS","#cd5c5c"],"11":["Flanking Bivalent TSS/Enh","#e9967a"],"12":["Bivalent Enhancer","#bdb76b"],"13":["Repressed PolyComb","#808080"],"14":["Weak Repressed PolyComb","#c0c0c0"],"15":["Quiescent/Low","#ffffff"],"-1":["no information","transparent"]}},{"combinestrands":true,"scalebarheight":true,"smoothwindow":11,"tracks":{"forward":{"CG":{"color":"rgb(100,139,216)","bg":"#d9d9d9","url":"https://vizhub.wustl.edu/public/hg19/RoadmapFinalMethylation/WGBS/E017.fm.f.bedGraph.gz"},"ReadDepth":{"color":"#525252","url":"https://vizhub.wustl.edu/public/hg19/RoadmapFinalMethylation/WGBS/E017.rc.f.bedGraph.gz"}},"reverse":{"CG":{"color":"rgb(100,139,216)","bg":"#d9d9d9","url":"https://vizhub.wustl.edu/public/hg19/RoadmapFinalMethylation/WGBS/E017.fm.r.bedGraph.gz"},"ReadDepth":{"color":"#525252","url":"https://vizhub.wustl.edu/public/hg19/RoadmapFinalMethylation/WGBS/E017.rc.r.bedGraph.gz"}}},"type":"methylc","name":"methylC-Seq of IMR90","mode":1,"qtc":{"height":70,"smooth":11},"metadata":{"md1":["11310"],"md3":["21004"],"md4":["30002"]}},{"type":"hic","name":"K562Ctr_HiC_2162019","url":"https://de.cyverse.org/dl/d/446117DD-1599-4702-9CB6-6A36864943FB/K562Ctr_Feb152019_Jiucer_inter.hic","mode":5,"qtc":{"anglescale":1,"textcolor":"#000000","thtype":1,"fontsize":"8pt","fontfamily":"sans-serif","fontbold":false,"pr":247,"pg":7,"pb":31,"nr":0,"ng":99,"nb":133,"pcolorscore":20,"ncolorscore":0,"pfilterscore":2,"nfilterscore":-2,"height":50,"matrix":"observed","norm":"NONE","unit_res":"BP","bin_size":"0","d_binsize":5000,"bg":null},"metadata":{}},{"type":"hic","name":"K562siMaz_HiC_feb152019","url":"https://de.cyverse.org/dl/d/17B22824-0871-4101-97AE-D118FEA7D879/K562SiMaz_Juicer_aligned_4152019_inter.hic","mode":5,"qtc":{"anglescale":1,"textcolor":"#000000","thtype":1,"fontsize":"8pt","fontfamily":"sans-serif","fontbold":false,"pr":247,"pg":7,"pb":31,"nr":0,"ng":99,"nb":133,"pcolorscore":20,"ncolorscore":0,"pfilterscore":2,"nfilterscore":-2,"height":50,"matrix":"observed","norm":"NONE","unit_res":"BP","bin_size":"0","d_binsize":5000,"bg":null},"metadata":{}},{"type":"hic","name":"HiC_SiDKSiCTCMAZ_K562_21519","url":"https://de.cyverse.org/dl/d/0B6AC4CB-4807-46C2-932B-BBC9F488992C/HiC_K562DKsiCTCFMAZ_Juicer_21519inter.hic","mode":5,"qtc":{"anglescale":1,"textcolor":"#000000","thtype":1,"fontsize":"8pt","fontfamily":"sans-serif","fontbold":false,"pr":247,"pg":7,"pb":31,"nr":0,"ng":99,"nb":133,"pcolorscore":20,"ncolorscore":0,"pfilterscore":2,"nfilterscore":-2,"height":50,"matrix":"observed","norm":"NONE","unit_res":"BP","bin_size":"0","d_binsize":5000},"metadata":{}},{"type":"hic","name":"HiC_K562SiMazCombJ2425F15","url":"https://de.cyverse.org/dl/d/692156E3-9A22-4B0F-88AA-0DEAA53FCBEB/HiC_CombJ2425F15_K562siMaz_inter.hic","mode":5,"qtc":{"anglescale":1,"textcolor":"#000000","thtype":0,"fontsize":"8pt","fontfamily":"sans-serif","fontbold":false,"pr":184,"pg":0,"pb":138,"nr":0,"ng":99,"nb":133,"pcolorscore":27,"ncolorscore":0,"pfilterscore":2,"nfilterscore":-2,"height":50,"matrix":"observed","norm":"NONE","unit_res":"BP","bin_size":"0","d_binsize":5000},"metadata":{}},{"type":"hic","name":"K562SiCTCF2152019","url":"https://de.cyverse.org/dl/d/B1B683A9-C84A-492A-9E26-1B871F9B9FF1/K562SiCTCF_Juicer_4162019_aligned_inter.hic","mode":5,"qtc":{"anglescale":1,"textcolor":"#000000","thtype":1,"fontsize":"8pt","fontfamily":"sans-serif","fontbold":false,"pr":247,"pg":7,"pb":31,"nr":0,"ng":99,"nb":133,"pcolorscore":20,"ncolorscore":0,"pfilterscore":2,"nfilterscore":-2,"height":50,"matrix":"observed","norm":"NONE","unit_res":"BP","bin_size":"0","d_binsize":5000,"bg":null},"metadata":{}},{"type":"bigwig","name":"RNASeq-K562Ctr","url":"https://de.cyverse.org/dl/d/19059FA8-E253-498E-BBBA-922942EE22D7/GSM2343264_ENCFF456PNI_signal_of_all_reads_GRCh38.bigWig","mode":1,"qtc":{"anglescale":1,"pr":0,"pg":0,"pb":230,"nr":255,"ng":0,"nb":0,"pth":"#000099","nth":"#800000","thtype":0,"thmin":0,"thmax":10,"thpercentile":90,"height":40,"summeth":1},"metadata":{}},{"type":"bigwig","name":"RNASeq-K562siMaz1","url":"https://de.cyverse.org/dl/d/C15DB057-76FA-46B1-B7D9-CBC241309AEA/GSM2343267_ENCFF033TAW_signal_of_all_reads_GRCh38.bigWig","mode":1,"qtc":{"anglescale":1,"pr":0,"pg":0,"pb":230,"nr":255,"ng":0,"nb":0,"pth":"#000099","nth":"#800000","thtype":0,"thmin":0,"thmax":10,"thpercentile":90,"height":40,"summeth":1},"metadata":{}},{"type":"bigwig","name":"Stanford ChipSeq K562 MAZ","url":"https://egg.wustl.edu/d/hg19/GSM935337_1.bigWig","mode":1,"qtc":{"anglescale":1,"pr":0,"pg":0,"pb":230,"nr":255,"ng":0,"nb":0,"pth":"#000099","nth":"#800000","thtype":0,"thmin":0,"thmax":10,"thpercentile":90,"height":10,"summeth":1},"metadata":{"md1":["14018"],"md3":["24601"],"md4":["30018"]},"geolst":["GSM935337"]},{"type":"bigwig","name":"Stanford ChipSeq K562 CTCF","url":"https://egg.wustl.edu/d/hg19/GSM935407_1.bigWig","mode":1,"qtc":{"anglescale":1,"pr":0,"pg":0,"pb":230,"nr":255,"ng":0,"nb":0,"pth":"#000099","nth":"#800000","thtype":0,"thmin":0,"thmax":10,"thpercentile":90,"height":10,"summeth":1},"metadata":{"md1":["14018"],"md3":["24001"],"md4":["30018"]},"geolst":["GSM935407"]},{"type":"bigwig","name":"Stanford ChipSeq K562 SMC3","url":"https://egg.wustl.edu/d/hg19/GSM935310_1.bigWig","mode":1,"qtc":{"anglescale":1,"pr":0,"pg":0,"pb":230,"nr":255,"ng":0,"nb":0,"pth":"#000099","nth":"#800000","thtype":0,"thmin":0,"thmax":10,"thpercentile":90,"height":10,"summeth":1},"metadata":{"md1":["14018"],"md3":["24613"],"md4":["30018"]},"geolst":["GSM935310"]},{"type":"interaction","name":"ENCODE GIS ChIA-PET K562 CTCF","url":"https://egg.wustl.edu/d/hg19/wgEncodeGisChiaPetK562CtcfInteractionsRep1.gz","mode":4,"qtc":{"anglescale":1,"textcolor":"#000000","thtype":0,"fontsize":"8pt","fontfamily":"sans-serif","fontbold":false,"pr":184,"pg":0,"pb":138,"nr":0,"ng":99,"nb":133,"pcolorscore":0,"ncolorscore":0,"pfilterscore":0,"nfilterscore":0,"height":10},"metadata":{"md1":["14018"],"md3":["27001"],"md4":["30007"]}},{"type":"interaction","name":"RAD21 ChIA-PET in K562-BR1 TR1","url":"https://epgg-test.wustl.edu/dli/long-range-mc/hg19/interaction_GSM1436264_ENCFF002ENO.txt.gz","mode":4,"qtc":{"anglescale":1,"textcolor":"#000000","thtype":0,"fontsize":"8pt","fontfamily":"sans-serif","fontbold":false,"pr":184,"pg":0,"pb":138,"nr":0,"ng":99,"nb":133,"pcolorscore":0,"ncolorscore":0,"pfilterscore":0,"nfilterscore":0,"height":10},"metadata":{"md1":["14018"],"md3":["27001"],"md4":["30018"]},"details":{"Publication":"Heidari N, Phanstiel DH, He C, Grubert F et al. Genome-wide map of regulatory interactions in the human genome. Genome Res 2014 Dec;24(12):1905-17.","PMID":"25228660"},"geolst":["GSE59395","GSM1436264"]},{"type":"bigwig","name":"USC ChipSeq K562 H3K4me3B","url":"https://egg.wustl.edu/d/hg19/GSM788087_1.bigWig","mode":1,"qtc":{"anglescale":1,"pr":0,"pg":0,"pb":230,"nr":255,"ng":0,"nb":0,"pth":"#000099","nth":"#800000","thtype":0,"thmin":0,"thmax":10,"thpercentile":90,"height":10,"summeth":1},"metadata":{"md1":["14018"],"md3":["22031"],"md4":["30016"]},"geolst":["GSM788087"]},{"type":"bigwig","name":"USC ChipSeq K562 H3K4me1","url":"https://egg.wustl.edu/d/hg19/GSM788085_1.bigWig","mode":1,"qtc":{"anglescale":1,"pr":0,"pg":133,"pb":66,"nr":255,"ng":0,"nb":0,"pth":"rgb(0,93,46)","nth":"#800000","thtype":0,"thmin":0,"thmax":10,"thpercentile":90,"height":10,"summeth":1},"metadata":{"md1":["14018"],"md3":["22010"],"md4":["30016"]},"geolst":["GSM788085"]},{"type":"bigwig","name":"Bernstein K562 H3K27ac","url":"https://egg.wustl.edu/d/hg19/GSM733656_1.bigWig","mode":1,"qtc":{"anglescale":1,"pr":0,"pg":0,"pb":150,"nr":255,"ng":0,"nb":0,"pth":"rgb(0,0,105)","nth":"#800000","thtype":0,"thmin":0,"thmax":10,"thpercentile":90,"height":10,"summeth":1},"metadata":{"md1":["14018"],"md3":["22019"],"md4":["30003"]},"geolst":["GSM733656"]},{"type":"bigwig","name":"Bernstein K562 H3K27me3","url":"https://egg.wustl.edu/d/hg19/GSM733658_1.bigWig","mode":1,"qtc":{"anglescale":1,"pr":180,"pg":0,"pb":0,"nr":255,"ng":0,"nb":0,"pth":"rgb(125,0,0)","nth":"#800000","thtype":0,"thmin":0,"thmax":10,"thpercentile":90,"height":10,"summeth":1},"metadata":{"md1":["14018"],"md3":["22018"],"md4":["30003"]},"geolst":["GSM733658"]},{"type":"bigwig","name":"Bernstein K562 H3K9me3","url":"https://egg.wustl.edu/d/hg19/GSM733776_1.bigWig","mode":1,"qtc":{"anglescale":1,"pr":159,"pg":0,"pb":72,"nr":255,"ng":0,"nb":0,"pth":"rgb(111,0,50)","nth":"#800000","thtype":0,"thmin":0,"thmax":10,"thpercentile":90,"height":10,"summeth":1},"metadata":{"md1":["14018"],"md3":["22012"],"md4":["30003"]},"geolst":["GSM733776"]},{"type":"bigwig","name":"Bernstein K562 H4K20me1","url":"https://egg.wustl.edu/d/hg19/GSM733675_1.bigWig","mode":1,"qtc":{"anglescale":1,"pr":0,"pg":150,"pb":150,"nr":255,"ng":0,"nb":0,"pth":"rgb(0,105,105)","nth":"#800000","thtype":0,"thmin":0,"thmax":10,"thpercentile":90,"height":10,"summeth":1},"metadata":{"md1":["14018"],"md3":["22025"],"md4":["30003"]},"geolst":["GSM733675"]},{"type":"bigwig","name":"UW ChipSeq K562 H3K4me3","url":"https://egg.wustl.edu/d/hg19/GSM945279_2.bigWig","mode":1,"qtc":{"anglescale":1,"pr":0,"pg":117,"pb":0,"nr":255,"ng":0,"nb":0,"pth":"rgb(0,81,0)","nth":"#800000","thtype":0,"thmin":0,"thmax":10,"thpercentile":90,"height":10,"summeth":1},"metadata":{"md1":["14018"],"md3":["22009"],"md4":["30004"]},"geolst":["GSM945279"]},{"type":"categorical","name":"chromHMM of K562","url":"https://egg.wustl.edu/d/hg19/E123_15_coreMarks_dense.gz","mode":1,"qtc":{"anglescale":1,"height":15},"metadata":{"md1":["14018"],"md3":["27004"],"md4":["30003"]},"categories":{"1":["Active TSS","#ff0000"],"2":["Flanking Active TSS","#ff4500"],"3":["Transcr at gene 5' and 3'","#32cd32"],"4":["Strong transcription","#008000"],"5":["Weak transcription","#006400"],"6":["Genic enhancers","#c2e105"],"7":["Enhancers","#ffff00"],"8":["ZNF genes & repeats","#66cdaa"],"9":["Heterochromatin","#8a91d0"],"10":["Bivalent/Poised TSS","#cd5c5c"],"11":["Flanking Bivalent TSS/Enh","#e9967a"],"12":["Bivalent Enhancer","#bdb76b"],"13":["Repressed PolyComb","#808080"],"14":["Weak Repressed PolyComb","#c0c0c0"],"15":["Quiescent/Low","#ffffff"],"-1":["no information","transparent"]}},{"type":"native_track","list":[{"name":"refGene","mode":3,"qtc":{"anglescale":1,"pr":255,"pg":0,"pb":0,"nr":0,"ng":0,"nb":230,"pth":"#800000","nth":"#000099","thtype":0,"thmin":0,"thmax":10,"thpercentile":95,"height":50,"summeth":1,"textcolor":"#000000","fontsize":"8pt","fontfamily":"sans-serif","fontbold":false,"bedcolor":"#002EB8"},"metadata":{},"details":{"source":"UCSC Genome Browser","download date":"Jan 1, 2012"}},{"name":"rmsk_all","mode":7,"qtc":{"anglescale":1,"pr":255,"pg":0,"pb":0,"nr":0,"ng":0,"nb":230,"pth":"#800000","nth":"#000099","thtype":0,"thmin":0,"thmax":10,"thpercentile":95,"height":35,"summeth":1,"textcolor":"#000000","fontsize":"8pt","fontfamily":"sans-serif","fontbold":false,"bedcolor":"#336666"},"showscoreidx":2,"scorenamelst":["Smith-Waterman score","SW score normalized by length","1-divergence%"],"scorescalelst":[{"type":0},{"type":0},{"type":0}],"metadata":{},"categories":{"1":["SINE - short interspersed nuclear elements","#cc0000"],"2":["LINE - long interspersed nuclear element","#FF6600"],"3":["LTR - long terminal repeat element","#006600"],"4":["DNA transposon","#4A72E8"],"5":["Simple repeat, micro-satellite","#AB833B"],"6":["Satellite repeat","#660000"],"7":["Low complexity repeat","#663333"],"8":["RNA repeat","#cc33ff"],"9":["Other repeats","#488E8E"],"10":["Unknown","#5C5C5C"],"-1":["no information","transparent"]}}]},{"type":"hic","name":"K562siMaz_HiC_7242019","url":"https://de.cyverse.org/dl/d/48797684-E796-454D-9415-F5AD990DE0E4/K562SiMaz_hichip_IpRad21_inter_30.hic","mode":"hide","qtc":{"anglescale":1,"textcolor":"#000000","thtype":0,"fontsize":"8pt","fontfamily":"sans-serif","fontbold":false,"pr":184,"pg":0,"pb":138,"nr":0,"ng":99,"nb":133,"pcolorscore":3,"ncolorscore":0,"pfilterscore":2,"nfilterscore":-2,"height":50,"matrix":"observed","norm":"NONE","unit_res":"BP","bin_size":"0","d_binsize":5000},"metadata":{}},{"type":"metadata","vocabulary_set":{"md1":"https://vizhub.wustl.edu/metadata/human/Samples","md2":"https://vizhub.wustl.edu/metadata/human/Donor","md3":"https://vizhub.wustl.edu/metadata/Experimental_assays","md4":"https://vizhub.wustl.edu/metadata/Institutions"},"show_terms":{"md1":["Sample"],"md3":["Assay"]}},{"type":"coordinate_override","coord":"chr14,32661296,chr14,32762912"}]