[{"type":"quantitativecategoryseries","name":"epilogos relent observed","url":"http://egg2.wustl.edu/roadmap/data/byFileType/chromhmmSegmentations/ChmmModels/epilogos/observed/qcat.gz","mode":1,"qtc":{"height":155,"bg":"rgb(0, 0, 0)"},"metadata":{},"categories":{"1":["Active TSS","#ff0000"],"2":["Flanking Active TSS","#ff4500"],"3":["Transcr at gene 5' and 3'","#32cd32"],"4":["Strong transcription","#008000"],"5":["Weak transcription","#006400"],"6":["Genic enhancers","#c2e105"],"7":["Enhancers","#ffff00"],"8":["ZNF genes & repeats","#66cdaa"],"9":["Heterochromatin","#8a91d0"],"10":["Bivalent/Poised TSS","#cd5c5c"],"11":["Flanking Bivalent TSS/Enh","#e9967a"],"12":["Bivalent Enhancer","#bdb76b"],"13":["Repressed PolyComb","#808080"],"14":["Weak Repressed PolyComb","#c0c0c0"],"15":["Quiescent/Low","#ffffff"],"-1":["no information","transparent"]}},{"type":"bed","name":"170412_LDSNPs.bed","url":"http://epigenomegateway.wustl.edu/browser/t/1626874634.txt.gz","mode":6,"qtc":{"anglescale":1,"pr":0,"pg":0,"pb":0,"nr":0,"ng":0,"nb":230,"pth":"#800000","nth":"#000099","thtype":0,"thmin":0,"thmax":10,"thpercentile":95,"height":15,"summeth":1,"textcolor":"#000000","fontsize":"8pt","fontfamily":"sans-serif","fontbold":false,"bedcolor":"#336666"},"metadata":{}},{"type":"bed","name":"lncipedia_4_0_hc_hg19.bed","url":"http://epigenomegateway.wustl.edu/browser/t/1297114420.txt.gz","mode":3,"qtc":{"anglescale":1,"pr":255,"pg":0,"pb":0,"nr":0,"ng":0,"nb":230,"pth":"#800000","nth":"#000099","thtype":0,"thmin":0,"thmax":10,"thpercentile":95,"height":50,"summeth":1,"textcolor":"rgb(0, 0, 0)","fontsize":"11pt","fontfamily":"sans-serif","fontbold":false,"bedcolor":"#336666"},"metadata":{}},{"type":"categorical","name":"chromHMM of Peripheral Blood Mononuclear Primary cells","url":"http://egg.wustl.edu/d/hg19/E062_15_coreMarks_dense.gz","mode":1,"qtc":{"anglescale":1,"height":15},"metadata":{"md1":["13018"],"md3":["27004"],"md4":["30014"]},"categories":{"1":["Active TSS","#ff0000"],"2":["Flanking Active TSS","#ff4500"],"3":["Transcr at gene 5' and 3'","#32cd32"],"4":["Strong transcription","#008000"],"5":["Weak transcription","#006400"],"6":["Genic enhancers","rgb(128, 128, 0)"],"7":["Enhancers","#ffff00"],"8":["ZNF genes & repeats","#66cdaa"],"9":["Heterochromatin","#8a91d0"],"10":["Bivalent/Poised TSS","#cd5c5c"],"11":["Flanking Bivalent TSS/Enh","#e9967a"],"12":["Bivalent Enhancer","#bdb76b"],"13":["Repressed PolyComb","#808080"],"14":["Weak Repressed PolyComb","#c0c0c0"],"15":["Quiescent/Low","#ffffff"],"-1":["no information","transparent"]}},{"type":"categorical","name":"ChromHMM of CD4 Primary cells","url":"http://egg.wustl.edu/d/hg19/E043_15_coreMarks_dense.gz","mode":1,"qtc":{"anglescale":1,"height":15},"metadata":{},"categories":{"1":["Active TSS","rgb(255, 0, 0)"],"2":["Flanking Active TSS","rgb(255, 153, 0)"],"3":["Transcr at gene 5' and 3'","rgb(40, 148, 40)"],"4":["Strong transcription","rgb(0, 125, 0)"],"5":["Weak Transcription","rgb(0, 61, 0)"],"6":["Genic enhancers","rgb(128, 128, 0)"],"7":["Enhancers","rgb(255, 255, 0)"],"8":["ZNF genes & repeats","rgb(102, 178, 178)"],"9":["Heterochromatin","rgb(154, 112, 185)"],"10":["Bivalent/Poised TSS","rgb(173, 91, 91)"],"11":["Flanking Bivalent TSS/Enh","rgb(208, 144, 144)"],"12":["Bivalent Enhancer","rgb(173, 173, 91)"],"13":["Repressed PolyComb","rgb(86, 86, 86)"],"14":["Weak Repressed PolyComb","rgb(150, 150, 150)"],"15":["Quiescent/Low","rgb(255, 255, 255)"],"-1":["no information","transparent"]}},{"type":"categorical","name":"chromHMM of CD19 Primary cells","url":"http://egg.wustl.edu/d/hg19/E032_15_coreMarks_dense.gz","mode":1,"qtc":{"anglescale":1,"height":15},"metadata":{"md1":["13028"],"md3":["27004"],"md4":["30004"]},"categories":{"1":["Active TSS","#ff0000"],"2":["Flanking Active TSS","#ff4500"],"3":["Transcr at gene 5' and 3'","#32cd32"],"4":["Strong transcription","#008000"],"5":["Weak transcription","#006400"],"6":["Genic enhancers","rgb(128, 128, 0)"],"7":["Enhancers","#ffff00"],"8":["ZNF genes & repeats","#66cdaa"],"9":["Heterochromatin","#8a91d0"],"10":["Bivalent/Poised TSS","#cd5c5c"],"11":["Flanking Bivalent TSS/Enh","#e9967a"],"12":["Bivalent Enhancer","#bdb76b"],"13":["Repressed PolyComb","#808080"],"14":["Weak Repressed PolyComb","#c0c0c0"],"15":["Quiescent/Low","#ffffff"],"-1":["no information","transparent"]}},{"type":"categorical","name":"chromHMM of CD14 primary cells","url":"http://egg.wustl.edu/d/hg19/E029_15_coreMarks_dense.gz","mode":1,"qtc":{"anglescale":1,"height":15},"metadata":{"md1":["13099"],"md3":["27004"],"md4":["30004"]},"categories":{"1":["Active TSS","#ff0000"],"2":["Flanking Active TSS","#ff4500"],"3":["Transcr at gene 5' and 3'","#32cd32"],"4":["Strong transcription","#008000"],"5":["Weak transcription","#006400"],"6":["Genic enhancers","rgb(128, 128, 0)"],"7":["Enhancers","#ffff00"],"8":["ZNF genes & repeats","#66cdaa"],"9":["Heterochromatin","#8a91d0"],"10":["Bivalent/Poised TSS","#cd5c5c"],"11":["Flanking Bivalent TSS/Enh","#e9967a"],"12":["Bivalent Enhancer","#bdb76b"],"13":["Repressed PolyComb","#808080"],"14":["Weak Repressed PolyComb","#c0c0c0"],"15":["Quiescent/Low","#ffffff"],"-1":["no information","transparent"]}},{"type":"native_track","list":[{"name":"gencodeV19","mode":3,"qtc":{"anglescale":1,"pr":255,"pg":0,"pb":0,"nr":0,"ng":0,"nb":230,"pth":"#800000","nth":"#000099","thtype":0,"thmin":0,"thmax":10,"thpercentile":95,"height":50,"summeth":1,"textcolor":"#000000","fontsize":"9pt","fontfamily":"sans-serif","fontbold":false,"bedcolor":"#336666"},"metadata":{},"categories":{"1":["coding","rgb(0,60,179)"],"2":["non-coding","rgb(0,128,0)"],"3":["pseudogene","rgb(230,0,172)"],"4":["problem","rgb(255,0,0)"],"5":["polyA","rgb(0,0,51)"],"-1":["no information","transparent"]}}]},{"rowcount":127,"rowheight":2,"type":"categorymatrix","name":"15-state model (observed)","url":"http://egg2.wustl.edu/roadmap/data/byFileType/chromhmmSegmentations/ChmmModels/compressedStateTracks/hg19_chromHMM_15.gz","mode":"hide","qtc":{},"metadata":{},"categories":{"1":["Active TSS","#ff0000"],"2":["Flanking Active TSS","#ff4500"],"3":["Transcr at gene 5' and 3'","#32cd32"],"4":["Strong transcription","#008000"],"5":["Weak transcription","#006400"],"6":["Genic enhancers","#c2e105"],"7":["Enhancers","#ffff00"],"8":["ZNF genes & repeats","#66cdaa"],"9":["Heterochromatin","#8a91d0"],"10":["Bivalent/Poised TSS","#cd5c5c"],"11":["Flanking Bivalent TSS/Enh","#e9967a"],"12":["Bivalent Enhancer","#bdb76b"],"13":["Repressed PolyComb","#808080"],"14":["Weak Repressed PolyComb","#c0c0c0"],"15":["Quiescent/Low","#ffffff"],"-1":["no information","transparent"]}},{"type":"categorical","name":"chromHMM of CD4 Memory Primary cells","url":"http://egg.wustl.edu/d/hg19/E037_15_coreMarks_dense.gz","mode":"hide","qtc":{"anglescale":1,"height":15},"metadata":{"md1":["13020"],"md3":["27004"],"md4":["30003"]},"categories":{"1":["Active TSS","#ff0000"],"2":["Flanking Active TSS","#ff4500"],"3":["Transcr at gene 5' and 3'","#32cd32"],"4":["Strong transcription","#008000"],"5":["Weak transcription","#006400"],"6":["Genic enhancers","#c2e105"],"7":["Enhancers","#ffff00"],"8":["ZNF genes & repeats","#66cdaa"],"9":["Heterochromatin","#8a91d0"],"10":["Bivalent/Poised TSS","#cd5c5c"],"11":["Flanking Bivalent TSS/Enh","#e9967a"],"12":["Bivalent Enhancer","#bdb76b"],"13":["Repressed PolyComb","#808080"],"14":["Weak Repressed PolyComb","#c0c0c0"],"15":["Quiescent/Low","#ffffff"],"-1":["no information","transparent"]}},{"type":"categorical","name":"chromHMM of CD4 Naive Primary cells","url":"http://egg.wustl.edu/d/hg19/E038_15_coreMarks_dense.gz","mode":"hide","qtc":{"anglescale":1,"height":15},"metadata":{"md1":["13025"],"md3":["27004"],"md4":["30003"]},"categories":{"1":["Active TSS","#ff0000"],"2":["Flanking Active TSS","#ff4500"],"3":["Transcr at gene 5' and 3'","#32cd32"],"4":["Strong transcription","#008000"],"5":["Weak transcription","#006400"],"6":["Genic enhancers","#c2e105"],"7":["Enhancers","#ffff00"],"8":["ZNF genes & repeats","#66cdaa"],"9":["Heterochromatin","#8a91d0"],"10":["Bivalent/Poised TSS","#cd5c5c"],"11":["Flanking Bivalent TSS/Enh","#e9967a"],"12":["Bivalent Enhancer","#bdb76b"],"13":["Repressed PolyComb","#808080"],"14":["Weak Repressed PolyComb","#c0c0c0"],"15":["Quiescent/Low","#ffffff"],"-1":["no information","transparent"]}},{"type":"metadata","vocabulary_set":{"md1":"http://vizhub.wustl.edu/metadata/human/Samples","md2":"http://vizhub.wustl.edu/metadata/human/Donor","md3":"http://vizhub.wustl.edu/metadata/Experimental_assays","md4":"http://vizhub.wustl.edu/metadata/Institutions"},"show_terms":{"md1":["Sample"],"md3":["Assay"]}},{"type":"coordinate_override","coord":"chr16,86005803,chr16,86021594"}]