[{"type":"bedgraph","name":"5mC_NI","url":"http://luis-barreirolab.org/Shared_Files/smooth_5mC_NI.bdg.gz","mode":1,"qtc":{"anglescale":1,"pr":0,"pg":0,"pb":230,"nr":255,"ng":0,"nb":0,"pth":"#000099","nth":"#800000","thtype":1,"thmin":30,"thmax":100,"thpercentile":90,"height":40,"summeth":3},"metadata":{}},{"type":"bedgraph","name":"5mC_MTB","url":"http://luis-barreirolab.org/Shared_Files/smooth_5mC_MTB.bdg.gz","mode":1,"qtc":{"anglescale":1,"pr":255,"pg":0,"pb":0,"nr":255,"ng":0,"nb":0,"pth":"#000099","nth":"#800000","thtype":1,"thmin":30,"thmax":100,"thpercentile":90,"height":40,"summeth":3},"metadata":{}},{"type":"bigwig","name":"H3K4me3_NI","url":"http://luis-barreirolab.org/Shared_Files/NI_H3K4me3_DA.bw","mode":1,"qtc":{"anglescale":1,"pr":0,"pg":0,"pb":230,"nr":255,"ng":0,"nb":0,"pth":"#000099","nth":"#800000","thtype":1,"thmin":0,"thmax":5,"thpercentile":90,"height":40,"summeth":1,"smooth":5},"metadata":{}},{"type":"bigwig","name":"H3K4me3_MTB","url":"http://luis-barreirolab.org/Shared_Files/TB_H3K4me3_DA.bw","mode":1,"qtc":{"anglescale":1,"pr":255,"pg":0,"pb":0,"nr":255,"ng":0,"nb":0,"pth":"#000099","nth":"#800000","thtype":1,"thmin":0,"thmax":5,"thpercentile":90,"height":40,"summeth":1,"smooth":5},"metadata":{}},{"type":"bigwig","name":"H3K4me1_NI","url":"http://luis-barreirolab.org/Shared_Files/NI_H3K4me1_DA.bw","mode":1,"qtc":{"anglescale":1,"pr":0,"pg":0,"pb":230,"nr":255,"ng":0,"nb":0,"pth":"#000099","nth":"#800000","thtype":1,"thmin":0,"thmax":8,"thpercentile":90,"height":40,"summeth":1,"smooth":5},"metadata":{}},{"type":"bigwig","name":"H3K4me1_MTB","url":"http://luis-barreirolab.org/Shared_Files/TB_H3K4me1_DA.bw","mode":1,"qtc":{"anglescale":1,"pr":255,"pg":0,"pb":0,"nr":255,"ng":0,"nb":0,"pth":"#000099","nth":"#800000","thtype":1,"thmin":0,"thmax":8,"thpercentile":90,"height":40,"summeth":1,"smooth":5},"metadata":{}},{"type":"bigwig","name":"H3K27ac_NI","url":"http://luis-barreirolab.org/Shared_Files/NI_H3K27ac_DA.bw","mode":1,"qtc":{"anglescale":1,"pr":0,"pg":0,"pb":230,"nr":255,"ng":0,"nb":0,"pth":"#000099","nth":"#800000","thtype":1,"thmin":0,"thmax":15,"thpercentile":90,"height":40,"summeth":1,"smooth":5},"metadata":{}},{"type":"bigwig","name":"H3K27ac_MTB","url":"http://luis-barreirolab.org/Shared_Files/TB_H3K27ac_DA.bw","mode":1,"qtc":{"anglescale":1,"pr":255,"pg":0,"pb":0,"nr":255,"ng":0,"nb":0,"pth":"#000099","nth":"#800000","thtype":1,"thmin":0,"thmax":15,"thpercentile":90,"height":40,"summeth":1,"smooth":5},"metadata":{}},{"type":"bigwig","name":"Tn5_NI","url":"http://luis-barreirolab.org/Shared_Files/NI_dnase_DA.bw","mode":1,"qtc":{"anglescale":1,"pr":0,"pg":0,"pb":230,"nr":255,"ng":0,"nb":0,"pth":"#000099","nth":"#800000","thtype":1,"thmin":0,"thmax":50,"thpercentile":90,"height":40,"summeth":1,"smooth":5},"metadata":{}},{"type":"bigwig","name":"Tn5_MTB","url":"http://luis-barreirolab.org/Shared_Files/TB_dnase_DA.bw","mode":1,"qtc":{"anglescale":1,"pr":255,"pg":0,"pb":0,"nr":255,"ng":0,"nb":0,"pth":"#000099","nth":"#800000","thtype":1,"thmin":0,"thmax":50,"thpercentile":90,"height":40,"summeth":1,"smooth":5},"metadata":{}},{"type":"bigwig","name":"mRNA_NI","url":"http://luis-barreirolab.org/Shared_Files/NI_rnaseq.bw","mode":1,"qtc":{"anglescale":1,"pr":0,"pg":0,"pb":230,"nr":255,"ng":0,"nb":0,"pth":"#000099","nth":"#800000","thtype":1,"thmin":0,"thmax":150,"thpercentile":90,"height":40,"summeth":1},"metadata":{}},{"type":"bigwig","name":"mRNA_MTB","url":"http://luis-barreirolab.org/Shared_Files/TB_rnaseq.bw","mode":1,"qtc":{"anglescale":1,"pr":255,"pg":0,"pb":0,"nr":255,"ng":0,"nb":0,"pth":"#000099","nth":"#800000","thtype":1,"thmin":0,"thmax":150,"thpercentile":90,"height":40,"summeth":1},"metadata":{}},{"type":"categorical","name":"chromHMM_NI","url":"http://luis-barreirolab.org/Shared_Files/DC_NI_7_segments_modID.bed.gz","mode":1,"qtc":{"anglescale":1,"height":15},"metadata":{},"categories":{"1":["Active promoter","rgb(75, 0, 130)"],"2":["Inactive promoter","rgb(106, 90, 205)"],"3":["Active enhancer","rgb(255, 0, 0)"],"4":["Active enhancer","rgb(255, 165, 0)"],"5":["Inactive enhancer","rgb(255, 255, 0)"],"6":["Transcription","rgb(0, 128, 0)"],"7":["Heterochromatin/Repressed","rgb(105, 105, 105)"],"-1":["no information","transparent"]}},{"type":"categorical","name":"chromHMM_TB","url":"http://luis-barreirolab.org/Shared_Files/DC_TB_7_segments_modID.bed.gz","mode":1,"qtc":{"anglescale":1,"height":15},"metadata":{},"categories":{"1":["Active promoter","rgb(75, 0, 130)"],"2":["Inactive promoter","rgb(106, 90, 205)"],"3":["Active enhancer","rgb(255, 0, 0)"],"4":["Active enhancer","rgb(255, 165, 0)"],"5":["Inactive enhancer","rgb(255, 255, 0)"],"6":["Transcription","rgb(0, 128, 0)"],"7":["Heterochromatin/Repressed","rgb(105, 105, 105)"],"-1":["no information","transparent"]}},{"type":"bed","name":"MTB-DMRs","url":"http://epigenomegateway.wustl.edu/browser/t/200214007.txt.gz","mode":3,"qtc":{"anglescale":1,"pr":0,"pg":77,"pb":0,"nr":0,"ng":0,"nb":230,"pth":"#800000","nth":"#000099","thtype":0,"thmin":0,"thmax":10,"thpercentile":95,"height":50,"summeth":1,"textcolor":"#000000","fontsize":"8pt","fontfamily":"sans-serif","fontbold":false,"bedcolor":"rgb(0, 0, 0)"},"metadata":{}},{"type":"native_track","list":[{"name":"refGene","mode":3,"qtc":{"anglescale":1,"pr":0,"pg":77,"pb":0,"nr":0,"ng":0,"nb":230,"pth":"#800000","nth":"#000099","thtype":0,"thmin":0,"thmax":10,"thpercentile":95,"height":50,"summeth":1,"textcolor":"#000000","fontsize":"8pt","fontfamily":"sans-serif","fontbold":false,"bedcolor":"#002EB8"},"metadata":{},"details":{"source":"UCSC Genome Browser","download date":"Jan 1, 2012"}}]},{"type":"bed","name":"MTB-DMRs.bed","url":"http://epigenomegateway.wustl.edu/browser/t/1008398811.txt.gz","mode":"hide","qtc":{"anglescale":1,"pr":0,"pg":77,"pb":0,"nr":0,"ng":0,"nb":230,"pth":"#800000","nth":"#000099","thtype":0,"thmin":0,"thmax":10,"thpercentile":95,"height":50,"summeth":1,"textcolor":"#000000","fontsize":"8pt","fontfamily":"sans-serif","fontbold":false,"bedcolor":"rgb(0, 0, 0)"},"metadata":{}},{"type":"metadata","vocabulary_set":{}},{"type":"coordinate_override","coord":"chr4,103513416,chr4,103527118"}]