[{"type":"bigwig","name":"10026 (Glia)","url":"ftp://ftp.nygenome.org/data2/wliao/tycko-1668/Project_TYC_12876_B01_WGBS_WGS/10026_CpG.bw","mode":1,"qtc":{"anglescale":1,"pr":178,"pg":34,"pb":34,"nr":178,"ng":34,"nb":34,"pth":"rgb(124,23,23)","nth":"rgb(124,23,23)","thtype":1,"thmin":0,"thmax":1,"thpercentile":90,"height":60,"summeth":1},"metadata":{}},{"type":"bigwig","name":"10015 (Glia)","url":"ftp://ftp.nygenome.org/data2/wliao/tycko-1668/Project_TYC_12876_B01_WGBS_WGS/10015_CpG.bw","mode":1,"qtc":{"anglescale":1,"pr":178,"pg":34,"pb":34,"nr":178,"ng":34,"nb":34,"pth":"rgb(124,23,23)","nth":"rgb(124,23,23)","thtype":1,"thmin":0,"thmax":1,"thpercentile":90,"height":60,"summeth":1},"metadata":{}},{"type":"bigwig","name":"10025 (Neurons)","url":"ftp://ftp.nygenome.org/data2/wliao/tycko-1668/Project_TYC_12876_B01_WGBS_WGS/10025_CpG.bw","mode":1,"qtc":{"anglescale":1,"pr":30,"pg":144,"pb":255,"nr":30,"ng":144,"nb":255,"pth":"rgb(21,100,178)","nth":"rgb(21,100,178)","thtype":1,"thmin":0,"thmax":1,"thpercentile":90,"height":60,"summeth":1},"metadata":{}},{"type":"bigwig","name":"10029 (Neurons)","url":"ftp://ftp.nygenome.org/data2/wliao/tycko-1668/Project_TYC_12876_B01_WGBS_WGS/10029_CpG.bw","mode":1,"qtc":{"anglescale":1,"pr":30,"pg":144,"pb":255,"nr":30,"ng":144,"nb":255,"pth":"rgb(21,100,178)","nth":"rgb(21,100,178)","thtype":1,"thmin":0,"thmax":1,"thpercentile":90,"height":60,"summeth":1},"metadata":{}},{"type":"bigwig","name":"10031 (Neurons)","url":"ftp://ftp.nygenome.org/data2/wliao/tycko-1668/Project_TYC_12876_B01_WGBS_WGS/10031_CpG.bw","mode":1,"qtc":{"anglescale":1,"pr":30,"pg":144,"pb":255,"nr":30,"ng":144,"nb":255,"pth":"rgb(21,100,178)","nth":"rgb(21,100,178)","thtype":1,"thmin":0,"thmax":1,"thpercentile":90,"height":60,"summeth":1},"metadata":{}},{"type":"bigwig","name":"10036 (WholeBrain)","url":"ftp://ftp.nygenome.org/data2/wliao/tycko-1668/Project_TYC_12876_B01_WGBS_WGS/10036_CpG.bw","mode":1,"qtc":{"anglescale":1,"pr":0,"pg":100,"pb":0,"nr":0,"ng":100,"nb":0,"pth":"rgb(0,70,0)","nth":"rgb(0,70,0)","thtype":1,"thmin":0,"thmax":1,"thpercentile":90,"height":60,"summeth":1},"metadata":{}},{"type":"bigwig","name":"6868 (Tcells)","url":"ftp://ftp.nygenome.org/data2/wliao/tycko-1668/Project_TYC_12876_B01_WGBS_WGS/6868_CpG.bw","mode":1,"qtc":{"anglescale":1,"pr":218,"pg":165,"pb":32,"nr":218,"ng":165,"nb":32,"pth":"rgb(152,115,22)","nth":"rgb(152,115,22)","thtype":1,"thmin":0,"thmax":1,"thpercentile":90,"height":60,"summeth":1},"metadata":{}},{"type":"bigwig","name":"10033 (Tcells)","url":"ftp://ftp.nygenome.org/data2/wliao/tycko-1668/Project_TYC_12876_B01_WGBS_WGS/10033_CpG.bw","mode":1,"qtc":{"anglescale":1,"pr":218,"pg":165,"pb":32,"nr":218,"ng":165,"nb":32,"pth":"rgb(152,115,22)","nth":"rgb(152,115,22)","thtype":1,"thmin":0,"thmax":1,"thpercentile":90,"height":60,"summeth":1},"metadata":{}},{"type":"bigwig","name":"9958.hg19 (BonnetOFC)","url":"ftp://ftp.nygenome.org/data2/wliao/tycko-1668/Project_TYC_12876_B01_WGBS_WGS/9958.hg19_CpG.bw","mode":1,"qtc":{"anglescale":1,"pr":160,"pg":32,"pb":240,"nr":160,"ng":32,"nb":240,"pth":"rgb(112,22,168)","nth":"rgb(112,22,168)","thtype":1,"thmin":0,"thmax":1,"thpercentile":90,"height":60,"summeth":1},"metadata":{}},{"type":"bigwig","name":"9960.hg19 (BonnetOFC)","url":"ftp://ftp.nygenome.org/data2/wliao/tycko-1668/Project_TYC_12876_B01_WGBS_WGS/9960.hg19_CpG.bw","mode":1,"qtc":{"anglescale":1,"pr":160,"pg":32,"pb":240,"nr":160,"ng":32,"nb":240,"pth":"rgb(112,22,168)","nth":"rgb(112,22,168)","thtype":1,"thmin":0,"thmax":1,"thpercentile":90,"height":60,"summeth":1},"metadata":{}},{"combinestrands":true,"scalebarheight":true,"smoothwindow":11,"tracks":{"forward":{"CG":{"color":"rgb(100,139,216)","bg":"#d9d9d9","url":"http://vizhub.wustl.edu/public/hg19/RoadmapFinalMethylation/WGBS/E054.fm.f.bedGraph.gz"},"ReadDepth":{"color":"#525252","url":"http://vizhub.wustl.edu/public/hg19/RoadmapFinalMethylation/WGBS/E054.rc.f.bedGraph.gz"}},"reverse":{"CG":{"color":"rgb(100,139,216)","bg":"#d9d9d9","url":"http://vizhub.wustl.edu/public/hg19/RoadmapFinalMethylation/WGBS/E054.fm.r.bedGraph.gz"},"ReadDepth":{"color":"#525252","url":"http://vizhub.wustl.edu/public/hg19/RoadmapFinalMethylation/WGBS/E054.rc.r.bedGraph.gz"}}},"type":"methylc","name":"methylC-Seq of Neurospheres  Ganglionic Eminence Derived","mode":1,"qtc":{"height":70,"smooth":11},"metadata":{"md1":["13031"],"md3":["21004"],"md4":["30014"]}},{"combinestrands":true,"scalebarheight":true,"smoothwindow":11,"tracks":{"forward":{"CG":{"color":"rgb(100,139,216)","bg":"#d9d9d9","url":"http://vizhub.wustl.edu/public/hg19/RoadmapFinalMethylation/WGBS/E053.fm.f.bedGraph.gz"},"ReadDepth":{"color":"#525252","url":"http://vizhub.wustl.edu/public/hg19/RoadmapFinalMethylation/WGBS/E053.rc.f.bedGraph.gz"}},"reverse":{"CG":{"color":"rgb(100,139,216)","bg":"#d9d9d9","url":"http://vizhub.wustl.edu/public/hg19/RoadmapFinalMethylation/WGBS/E053.fm.r.bedGraph.gz"},"ReadDepth":{"color":"#525252","url":"http://vizhub.wustl.edu/public/hg19/RoadmapFinalMethylation/WGBS/E053.rc.r.bedGraph.gz"}}},"type":"methylc","name":"methylC-Seq of Neurospheres  Cortex Derived","mode":1,"qtc":{"height":70,"smooth":11},"metadata":{"md1":["13033"],"md3":["21004"],"md4":["30014"]}},{"combinestrands":true,"scalebarheight":true,"smoothwindow":11,"tracks":{"forward":{"CG":{"color":"rgb(100,139,216)","bg":"#d9d9d9","url":"http://vizhub.wustl.edu/public/hg19/RoadmapFinalMethylation/WGBS/E071.fm.f.bedGraph.gz"},"ReadDepth":{"color":"#525252","url":"http://vizhub.wustl.edu/public/hg19/RoadmapFinalMethylation/WGBS/E071.rc.f.bedGraph.gz"}},"reverse":{"CG":{"color":"rgb(100,139,216)","bg":"#d9d9d9","url":"http://vizhub.wustl.edu/public/hg19/RoadmapFinalMethylation/WGBS/E071.fm.r.bedGraph.gz"},"ReadDepth":{"color":"#525252","url":"http://vizhub.wustl.edu/public/hg19/RoadmapFinalMethylation/WGBS/E071.rc.r.bedGraph.gz"}}},"type":"methylc","name":"methylC-Seq of Brain Hippocampus Middle","mode":1,"qtc":{"height":70,"smooth":11},"metadata":{"md1":["13042"],"md3":["21004"],"md4":["30003"]}},{"combinestrands":true,"scalebarheight":true,"smoothwindow":11,"tracks":{"forward":{"CG":{"color":"rgb(100,139,216)","bg":"#d9d9d9","url":"http://vizhub.wustl.edu/public/hg19/RoadmapFinalMethylation/WGBS/E070.fm.f.bedGraph.gz"},"ReadDepth":{"color":"#525252","url":"http://vizhub.wustl.edu/public/hg19/RoadmapFinalMethylation/WGBS/E070.rc.f.bedGraph.gz"}},"reverse":{"CG":{"color":"rgb(100,139,216)","bg":"#d9d9d9","url":"http://vizhub.wustl.edu/public/hg19/RoadmapFinalMethylation/WGBS/E070.fm.r.bedGraph.gz"},"ReadDepth":{"color":"#525252","url":"http://vizhub.wustl.edu/public/hg19/RoadmapFinalMethylation/WGBS/E070.rc.r.bedGraph.gz"}}},"type":"methylc","name":"methylC-Seq of Brain Germinal Matrix","mode":1,"qtc":{"height":70,"smooth":11},"metadata":{"md1":["13155"],"md3":["21004"],"md4":["30014"]}},{"type":"native_track","list":[{"name":"refGene","mode":3,"qtc":{"anglescale":1,"pr":255,"pg":0,"pb":0,"nr":0,"ng":0,"nb":230,"pth":"#800000","nth":"#000099","thtype":0,"thmin":0,"thmax":10,"thpercentile":95,"height":50,"summeth":1,"textcolor":"#000000","fontsize":"8pt","fontfamily":"sans-serif","fontbold":false,"bedcolor":"#002EB8"},"metadata":{},"details":{"source":"UCSC Genome Browser","download date":"Jan 1, 2012"}},{"name":"rmsk_all","mode":7,"qtc":{"anglescale":1,"pr":255,"pg":0,"pb":0,"nr":0,"ng":0,"nb":230,"pth":"#800000","nth":"#000099","thtype":0,"thmin":0,"thmax":10,"thpercentile":95,"height":35,"summeth":1,"textcolor":"#000000","fontsize":"8pt","fontfamily":"sans-serif","fontbold":false,"bedcolor":"#336666"},"showscoreidx":2,"scorenamelst":["Smith-Waterman score","SW score normalized by length","1-divergence%"],"scorescalelst":[{"type":0},{"type":0},{"type":0}],"metadata":{},"categories":{"1":["SINE - short interspersed nuclear elements","#cc0000"],"2":["LINE - long interspersed nuclear element","#FF6600"],"3":["LTR - long terminal repeat element","#006600"],"4":["DNA transposon","#4A72E8"],"5":["Simple repeat, micro-satellite","#AB833B"],"6":["Satellite repeat","#660000"],"7":["Low complexity repeat","#663333"],"8":["RNA repeat","#cc33ff"],"9":["Other repeats","#488E8E"],"10":["Unknown","#5C5C5C"],"-1":["no information","transparent"]}}]},{"type":"metadata","vocabulary_set":{"md1":"http://vizhub.wustl.edu/metadata/human/Samples","md2":"http://vizhub.wustl.edu/metadata/human/Donor","md3":"http://vizhub.wustl.edu/metadata/Experimental_assays","md4":"http://vizhub.wustl.edu/metadata/Institutions"},"show_terms":{"md1":["Sample"],"md3":["Assay"]}},{"type":"coordinate_override","coord":"chr4,23260265,chr4,38610190"}]