[{"type":"categorical","name":"GM12878 chromatin state","url":"http://egg.wustl.edu/d/hg19/wgEncodeBroadHmmGm12878HMM.gz","mode":1,"qtc":{"anglescale":1,"height":15},"metadata":{"md1":["13047"],"md3":["27004"],"md4":["30003"]},"categories":{"1":["Active promoter","#ff0000"],"2":["Weak promoter","#ff6969"],"3":["Inactive/poised promoter","#cf0bc6"],"4":["Strong enhancer","#faca00"],"5":["Strong enhancer","#faca00"],"6":["Weak enhancer","#fffc04"],"7":["Weak enhancer","#fffc04"],"8":["Insulator","#0abefe"],"9":["Transcriptional transition","#00b050"],"10":["Transcriptional elongation","#00b050"],"11":["Weak transcribed","#99ff66"],"12":["Polycomb-repressed","#7f7f7f"],"13":["Heterochromatin, low signal","#f5f5f5"],"14":["Repetitive/CNV","#f5f5f5"],"15":["Repetitive/CNV","#f5f5f5"],"-1":["no information","transparent"]},"geolst":["GSM936082"]},{"type":"categorical","name":"H1ES chromatin state","url":"http://egg.wustl.edu/d/hg19/wgEncodeBroadHmmH1hescHMM.gz","mode":1,"qtc":{"anglescale":1,"height":15},"metadata":{"md1":["11101"],"md3":["27004"],"md4":["30003"]},"categories":{"1":["Active promoter","#ff0000"],"2":["Weak promoter","#ff6969"],"3":["Inactive/poised promoter","#cf0bc6"],"4":["Strong enhancer","#faca00"],"5":["Strong enhancer","#faca00"],"6":["Weak enhancer","#fffc04"],"7":["Weak enhancer","#fffc04"],"8":["Insulator","#0abefe"],"9":["Transcriptional transition","#00b050"],"10":["Transcriptional elongation","#00b050"],"11":["Weak transcribed","#99ff66"],"12":["Polycomb-repressed","#7f7f7f"],"13":["Heterochromatin, low signal","#f5f5f5"],"14":["Repetitive/CNV","#f5f5f5"],"15":["Repetitive/CNV","#f5f5f5"],"-1":["no information","transparent"]},"geolst":["GSM936083"]},{"type":"categorical","name":"K562 chromatin state","url":"http://egg.wustl.edu/d/hg19/wgEncodeBroadHmmK562HMM.gz","mode":1,"qtc":{"anglescale":1,"height":15},"metadata":{"md1":["14018"],"md3":["27004"],"md4":["30003"]},"categories":{"1":["Active promoter","#ff0000"],"2":["Weak promoter","#ff6969"],"3":["Inactive/poised promoter","#cf0bc6"],"4":["Strong enhancer","#faca00"],"5":["Strong enhancer","#faca00"],"6":["Weak enhancer","#fffc04"],"7":["Weak enhancer","#fffc04"],"8":["Insulator","#0abefe"],"9":["Transcriptional transition","#00b050"],"10":["Transcriptional elongation","#00b050"],"11":["Weak transcribed","#99ff66"],"12":["Polycomb-repressed","#7f7f7f"],"13":["Heterochromatin, low signal","#f5f5f5"],"14":["Repetitive/CNV","#f5f5f5"],"15":["Repetitive/CNV","#f5f5f5"],"-1":["no information","transparent"]},"geolst":["GSM936088"]},{"type":"categorical","name":"HUVEC chromatin state","url":"http://egg.wustl.edu/d/hg19/wgEncodeBroadHmmHuvecHMM.gz","mode":1,"qtc":{"anglescale":1,"height":15},"metadata":{"md1":["13052"],"md3":["27004"],"md4":["30003"]},"categories":{"1":["Active promoter","#ff0000"],"2":["Weak promoter","#ff6969"],"3":["Inactive/poised promoter","#cf0bc6"],"4":["Strong enhancer","#faca00"],"5":["Strong enhancer","#faca00"],"6":["Weak enhancer","#fffc04"],"7":["Weak enhancer","#fffc04"],"8":["Insulator","#0abefe"],"9":["Transcriptional transition","#00b050"],"10":["Transcriptional elongation","#00b050"],"11":["Weak transcribed","#99ff66"],"12":["Polycomb-repressed","#7f7f7f"],"13":["Heterochromatin, low signal","#f5f5f5"],"14":["Repetitive/CNV","#f5f5f5"],"15":["Repetitive/CNV","#f5f5f5"],"-1":["no information","transparent"]},"geolst":["GSM936089"]},{"type":"categorical","name":"NHLF chromatin state","url":"http://egg.wustl.edu/d/hg19/wgEncodeBroadHmmNhlfHMM.gz","mode":1,"qtc":{"anglescale":1,"height":15},"metadata":{"md1":["13057"],"md3":["27004"],"md4":["30003"]},"categories":{"1":["Active promoter","#ff0000"],"2":["Weak promoter","#ff6969"],"3":["Inactive/poised promoter","#cf0bc6"],"4":["Strong enhancer","#faca00"],"5":["Strong enhancer","#faca00"],"6":["Weak enhancer","#fffc04"],"7":["Weak enhancer","#fffc04"],"8":["Insulator","#0abefe"],"9":["Transcriptional transition","#00b050"],"10":["Transcriptional elongation","#00b050"],"11":["Weak transcribed","#99ff66"],"12":["Polycomb-repressed","#7f7f7f"],"13":["Heterochromatin, low signal","#f5f5f5"],"14":["Repetitive/CNV","#f5f5f5"],"15":["Repetitive/CNV","#f5f5f5"],"-1":["no information","transparent"]},"geolst":["GSM936086"]},{"type":"categorical","name":"NHEK chromatin state","url":"http://egg.wustl.edu/d/hg19/wgEncodeBroadHmmNhekHMM.gz","mode":1,"qtc":{"anglescale":1,"height":15},"metadata":{"md1":["13056"],"md3":["27004"],"md4":["30003"]},"categories":{"1":["Active promoter","#ff0000"],"2":["Weak promoter","#ff6969"],"3":["Inactive/poised promoter","#cf0bc6"],"4":["Strong enhancer","#faca00"],"5":["Strong enhancer","#faca00"],"6":["Weak enhancer","#fffc04"],"7":["Weak enhancer","#fffc04"],"8":["Insulator","#0abefe"],"9":["Transcriptional transition","#00b050"],"10":["Transcriptional elongation","#00b050"],"11":["Weak transcribed","#99ff66"],"12":["Polycomb-repressed","#7f7f7f"],"13":["Heterochromatin, low signal","#f5f5f5"],"14":["Repetitive/CNV","#f5f5f5"],"15":["Repetitive/CNV","#f5f5f5"],"-1":["no information","transparent"]},"geolst":["GSM936087"]},{"type":"bigwig","name":"Stanford ChipSeq GM12878 CTCF","url":"http://egg.wustl.edu/d/hg19/GSM935611_1.bigWig","mode":1,"qtc":{"anglescale":1,"pr":0,"pg":0,"pb":230,"nr":255,"ng":0,"nb":0,"pth":"#000099","nth":"#800000","thtype":0,"thmin":0,"thmax":10,"thpercentile":90,"height":10,"summeth":1},"metadata":{"md1":["13047"],"md3":["24001"],"md4":["30018"]},"geolst":["GSM935611"]},{"type":"bigwig","name":"Bernstein GM12878 CTCF","url":"http://egg.wustl.edu/d/hg19/GSM733752_1.bigWig","mode":1,"qtc":{"anglescale":1,"pr":0,"pg":0,"pb":230,"nr":255,"ng":0,"nb":0,"pth":"#000099","nth":"#800000","thtype":0,"thmin":0,"thmax":10,"thpercentile":90,"height":10,"summeth":1},"metadata":{"md1":["13047"],"md3":["24001"],"md4":["30003"]},"geolst":["GSM733752"]},{"type":"bigwig","name":"Broad ChipSeq CD20+ CTCF","url":"http://egg.wustl.edu/d/hg19/GSM1003474_1.bigWig","mode":1,"qtc":{"anglescale":1,"pr":0,"pg":0,"pb":230,"nr":255,"ng":0,"nb":0,"pth":"#000099","nth":"#800000","thtype":0,"thmin":0,"thmax":10,"thpercentile":90,"height":10,"summeth":1},"metadata":{"md1":["13132"],"md3":["24001"],"md4":["30003"]},"geolst":["GSM1003474"]},{"type":"bigwig","name":"Broad ChipSeq Monocytes-CD14+ RO01746","url":"http://egg.wustl.edu/d/hg19/GSM1003508_1.bigWig","mode":1,"qtc":{"anglescale":1,"pr":0,"pg":0,"pb":230,"nr":255,"ng":0,"nb":0,"pth":"#000099","nth":"#800000","thtype":0,"thmin":0,"thmax":10,"thpercentile":90,"height":10,"summeth":1},"metadata":{"md1":["13068"],"md3":["24001"],"md4":["30003"]},"geolst":["GSM1003508"]},{"type":"bigwig","name":"Bernstein HUVEC CTCF","url":"http://egg.wustl.edu/d/hg19/GSM733716_1.bigWig","mode":1,"qtc":{"anglescale":1,"pr":0,"pg":0,"pb":230,"nr":255,"ng":0,"nb":0,"pth":"#000099","nth":"#800000","thtype":0,"thmin":0,"thmax":10,"thpercentile":90,"height":10,"summeth":1},"metadata":{"md1":["13052"],"md3":["24001"],"md4":["30003"]},"geolst":["GSM733716"]},{"type":"bigwig","name":"Stam HUVEC CTCF 1","url":"http://egg.wustl.edu/d/hg19/GSM749674_1.bigWig","mode":1,"qtc":{"anglescale":1,"pr":0,"pg":0,"pb":230,"nr":255,"ng":0,"nb":0,"pth":"#000099","nth":"#800000","thtype":0,"thmin":0,"thmax":10,"thpercentile":90,"height":10,"summeth":1},"metadata":{"md1":["13052"],"md3":["24001"],"md4":["30004"]},"geolst":["GSM749674"]},{"type":"bigwig","name":"Bernstein NHEK CTCF","url":"http://egg.wustl.edu/d/hg19/GSM733636_1.bigWig","mode":1,"qtc":{"anglescale":1,"pr":0,"pg":0,"pb":230,"nr":255,"ng":0,"nb":0,"pth":"#000099","nth":"#800000","thtype":0,"thmin":0,"thmax":10,"thpercentile":90,"height":10,"summeth":1},"metadata":{"md1":["13056"],"md3":["24001"],"md4":["30003"]},"geolst":["GSM733636"]},{"type":"bigwig","name":"Stam NHEK CTCF 1","url":"http://egg.wustl.edu/d/hg19/GSM749707_1.bigWig","mode":1,"qtc":{"anglescale":1,"pr":0,"pg":0,"pb":230,"nr":255,"ng":0,"nb":0,"pth":"#000099","nth":"#800000","thtype":0,"thmin":0,"thmax":10,"thpercentile":90,"height":10,"summeth":1},"metadata":{"md1":["13056"],"md3":["24001"],"md4":["30004"]},"geolst":["GSM749707"]},{"type":"bigwig","name":"UW ChipSeq NB4 CTCFRep1","url":"http://egg.wustl.edu/d/hg19/GSM1022643_1.bigWig","mode":1,"qtc":{"anglescale":1,"pr":0,"pg":0,"pb":230,"nr":255,"ng":0,"nb":0,"pth":"#000099","nth":"#800000","thtype":0,"thmin":0,"thmax":10,"thpercentile":90,"height":10,"summeth":1},"metadata":{"md1":["14008"],"md3":["24001"],"md4":["30004"]},"geolst":["GSM1022643"]},{"type":"bigwig","name":"Bernstein K562 CTCF","url":"http://egg.wustl.edu/d/hg19/GSM733719_1.bigWig","mode":1,"qtc":{"anglescale":1,"pr":0,"pg":0,"pb":230,"nr":255,"ng":0,"nb":0,"pth":"#000099","nth":"#800000","thtype":0,"thmin":0,"thmax":10,"thpercentile":90,"height":10,"summeth":1},"metadata":{"md1":["14018"],"md3":["24001"],"md4":["30003"]},"geolst":["GSM733719"]},{"type":"bigwig","name":"Stanford ChipSeq K562 CTCF","url":"http://egg.wustl.edu/d/hg19/GSM935407_1.bigWig","mode":1,"qtc":{"anglescale":1,"pr":0,"pg":0,"pb":230,"nr":255,"ng":0,"nb":0,"pth":"#000099","nth":"#800000","thtype":0,"thmin":0,"thmax":10,"thpercentile":90,"height":10,"summeth":1},"metadata":{"md1":["14018"],"md3":["24001"],"md4":["30018"]},"geolst":["GSM935407"]},{"type":"bigwig","name":"Bernstein H1-hESC CTCF","url":"http://egg.wustl.edu/d/hg19/GSM733672_1.bigWig","mode":1,"qtc":{"anglescale":1,"pr":0,"pg":0,"pb":230,"nr":255,"ng":0,"nb":0,"pth":"#000099","nth":"#800000","thtype":0,"thmin":0,"thmax":10,"thpercentile":90,"height":10,"summeth":1},"metadata":{"md1":["11101"],"md3":["24001"],"md4":["30003"]},"geolst":["GSM733672"]},{"type":"interaction","name":"gisChiaPet HCT116 RNAPII pilot","url":"http://egg.wustl.edu/d/hg19/GSM832460.gz","mode":3,"qtc":{"anglescale":1,"textcolor":"#000000","thtype":0,"fontsize":"8pt","fontfamily":"sans-serif","fontbold":false,"pr":184,"pg":0,"pb":138,"nr":0,"ng":99,"nb":133,"pcolorscore":0,"ncolorscore":0,"pfilterscore":0,"nfilterscore":0,"height":10},"metadata":{"md1":["14005"],"md3":["27001"],"md4":["30007"]},"geolst":["GSM832460","GSE33664"]},{"type":"interaction","name":"gisChiaPet NB4 RNAPII pilot","url":"http://egg.wustl.edu/d/hg19/GSM832462.gz","mode":3,"qtc":{"anglescale":1,"textcolor":"#000000","thtype":0,"fontsize":"8pt","fontfamily":"sans-serif","fontbold":false,"pr":184,"pg":0,"pb":138,"nr":0,"ng":99,"nb":133,"pcolorscore":0,"ncolorscore":0,"pfilterscore":0,"nfilterscore":0,"height":10},"metadata":{"md1":["14008"],"md3":["27001"],"md4":["30007"]},"geolst":["GSM832462","GSE33664"]},{"type":"interaction","name":"gisChiaPet K562 RNAPII pilot","url":"http://egg.wustl.edu/d/hg19/GSM832463.gz","mode":4,"qtc":{"anglescale":1,"textcolor":"#000000","thtype":0,"fontsize":"8pt","fontfamily":"sans-serif","fontbold":false,"pr":184,"pg":0,"pb":138,"nr":0,"ng":99,"nb":133,"pcolorscore":0,"ncolorscore":0,"pfilterscore":0,"nfilterscore":0,"height":10},"metadata":{"md1":["14018"],"md3":["27001"],"md4":["30007"]},"geolst":["GSM832463","GSE33664"]},{"type":"native_track","list":[{"name":"rmsk_all","mode":7,"qtc":{"anglescale":1,"pr":0,"pg":77,"pb":0,"nr":0,"ng":0,"nb":230,"pth":"#800000","nth":"#000099","thtype":0,"thmin":0,"thmax":10,"thpercentile":95,"height":35,"summeth":1,"textcolor":"#000000","fontsize":"8pt","fontfamily":"sans-serif","fontbold":false,"bedcolor":"#336666"},"showscoreidx":2,"scorenamelst":["Smith-Waterman score","SW score normalized by length","1-divergence%"],"scorescalelst":[{"type":0},{"type":0},{"type":0}],"metadata":{},"categories":{"1":["SINE - short interspersed nuclear elements","#cc0000"],"2":["LINE - long interspersed nuclear element","#FF6600"],"3":["LTR - long terminal repeat element","#006600"],"4":["DNA transposon","#4A72E8"],"5":["Simple repeat, micro-satellite","#AB833B"],"6":["Satellite repeat","#660000"],"7":["Low complexity repeat","#663333"],"8":["RNA repeat","#cc33ff"],"9":["Other repeats","#488E8E"],"10":["Unknown","#5C5C5C"],"-1":["no information","transparent"]}},{"name":"refGene","mode":3,"qtc":{"anglescale":1,"pr":0,"pg":77,"pb":0,"nr":0,"ng":0,"nb":230,"pth":"#800000","nth":"#000099","thtype":0,"thmin":0,"thmax":10,"thpercentile":95,"height":50,"summeth":1,"textcolor":"#000000","fontsize":"8pt","fontfamily":"sans-serif","fontbold":false,"bedcolor":"#002EB8"},"metadata":{},"details":{"source":"UCSC Genome Browser","download date":"Jan 1, 2012"}}]},{"type":"metadata","vocabulary_set":{"md1":"http://vizhub.wustl.edu/metadata/human/Samples","md2":"http://vizhub.wustl.edu/metadata/human/Donor","md3":"http://vizhub.wustl.edu/metadata/Experimental_assays","md4":"http://vizhub.wustl.edu/metadata/Institutions"},"show_terms":{"md1":["Sample"],"md3":["Assay"]}},{"type":"coordinate_override","coord":"chr12,68437094,chr12,68536960"}]