[{"type":"bedGraph","name":"E017 H3K4me1 of IMR90 (fetal lung fibroblast)","url":"http://egg.wustl.edu/d/hg19/GSM521895.gz","public":true,"mode":1,"qtc":{"anglescale":1,"pr":238,"pg":236,"pb":51,"nr":255,"ng":0,"nb":0,"pth":"rgb(238,236,51)","nth":"#800000","thtype":2,"thmin":0,"thmax":10,"thpercentile":98,"height":45,"summeth":1,"smooth":7},"annotation":["11310","22010","30002"],"custom_annotation":["10","bedGraph"],"details":{"molecule":"genomic DNA"," disease":"None","biomaterial_provider":"ATCC","biomaterial_type":"Cell Line","line":"IMR90","lineage":"NA","batch":"1","differentiation_stage":"Fetal lung fibroblast","differentiation_method":"NA","passage":"4","medium":"Minimum Essential Medium, Eagle with Earle's Balanced Salt Solution supplemented with 10% Fetal Bovine Serum (FBS), 1% Pen/Strep (penicillin, streptomycin), 1% GlutaMax (stable form of glutamine)","Sex":"Female","experiment_type":"Histone H3K4me1","extraction_protocol":"See","extraction_protocol_type_of_sonicator":"Branson Tip Sonicator","extraction_protocol_sonication_cycles":"30","chip_protocol":"See","chip_protocol_chromatin_amount":"500 micrograms","chip_protocol_bead_type":"magnetic anti-rabbit","chip_protocol_bead_amount":"33,500,000","chip_protocol_antibody_amount":"5 micrograms","chip_antibody":"H3K4me1","chip_antibody_provider":"Abcam","chip_antibody_catalog":"ab8895","chip_antibody_lot":"u535659","original_filename":"GSM521895_UCSD.IMR90.H3K4me1.LL222.bigWig","Embargo end date":"2010-12-22"},"geolst":["GSM521895"]},{"type":"bigWig","name":"E017 H3K4me1 of IMR90 (fetal lung fibroblast)","url":"http://egg.wustl.edu/d/hg19/GSM521898.bigWig","public":true,"mode":1,"qtc":{"anglescale":1,"pr":238,"pg":236,"pb":51,"nr":255,"ng":0,"nb":0,"pth":"rgb(238,236,51)","nth":"#800000","thtype":2,"thmin":0,"thmax":10,"thpercentile":98,"height":5,"summeth":1,"smooth":7},"annotation":["11310","22010","30002"],"custom_annotation":["10","bigWig"],"details":{"molecule":"genomic DNA"," disease":"None","biomaterial_provider":"ATCC","biomaterial_type":"Cell Line","line":"IMR90","lineage":"NA","batch":"7","differentiation_stage":"Fetal lung fibroblast","differentiation_method":"NA","passage":"NA","medium":"Minimum Essential Medium, Eagle with Earle's Balanced Salt Solution supplemented with 10% Fetal Bovine Serum (FBS), 1% Pen/Strep (penicillin, streptomycin), 1% GlutaMax (stable form of glutamine)","Sex":"Female","experiment_type":"Histone H3K4me1","extraction_protocol":"See","extraction_protocol_type_of_sonicator":"Biorupter","extraction_protocol_sonication_cycles":"240","chip_protocol":"See","chip_protocol_chromatin_amount":"500 micrograms","chip_protocol_bead_type":"magnetic anti-rabbit","chip_protocol_bead_amount":"33,500,000","chip_protocol_antibody_amount":"5 micrograms","chip_antibody":"H3K4me1","chip_antibody_provider":"Abcam","chip_antibody_catalog":"ab8895","chip_antibody_lot":"720417","original_filename":"GSM521898_UCSD.IMR90.H3K4me1.SYL133.bigWig","Embargo end date":"2010-12-22"},"geolst":["GSM521898"]},{"type":"bedGraph","name":"E017 H3K4me1 of IMR90 (fetal lung fibroblast)","url":"http://egg.wustl.edu/d/hg19/GSM521897.gz","public":true,"mode":1,"qtc":{"anglescale":1,"pr":238,"pg":236,"pb":51,"nr":255,"ng":0,"nb":0,"pth":"rgb(238,236,51)","nth":"#800000","thtype":2,"thmin":0,"thmax":10,"thpercentile":98,"height":7,"summeth":1,"smooth":7},"annotation":["11310","22010","30002"],"custom_annotation":["10","bedGraph"],"details":{"molecule":"genomic DNA"," disease":"None","biomaterial_provider":"ATCC","biomaterial_type":"Cell Line","line":"IMR90","lineage":"NA","batch":"4","differentiation_stage":"Fetal lung fibroblast","differentiation_method":"NA","passage":"NA","medium":"Minimum Essential Medium, Eagle with Earle's Balanced Salt Solution supplemented with 10% Fetal Bovine Serum (FBS), 1% Pen/Strep (penicillin, streptomycin), 1% GlutaMax (stable form of glutamine)","Sex":"Female","experiment_type":"Histone H3K4me1","extraction_protocol":"See","extraction_protocol_type_of_sonicator":"Biorupter","extraction_protocol_sonication_cycles":"120","chip_protocol":"See","chip_protocol_chromatin_amount":"500 micrograms","chip_protocol_bead_type":"magnetic anti-rabbit","chip_protocol_bead_amount":"33,500,000","chip_protocol_antibody_amount":"5 micrograms","chip_antibody":"H3K4me1","chip_antibody_provider":"Abcam","chip_antibody_catalog":"ab8895","chip_antibody_lot":"535659","original_filename":"GSM521897_UCSD.IMR90.H3K4me1.SK04.bigWig","Embargo end date":"2010-12-22"},"geolst":["GSM521897"]},{"type":"bigWig","name":"E002 H3K4me1 of WA-7","url":"http://egg.wustl.edu/d/hg19/GSM537641.bigWig","public":true,"mode":1,"qtc":{"anglescale":1,"pr":238,"pg":236,"pb":51,"nr":255,"ng":0,"nb":0,"pth":"rgb(238,236,51)","nth":"#800000","thtype":2,"thmin":0,"thmax":10,"thpercentile":98,"height":5,"summeth":1,"smooth":7},"annotation":["11103","22010","30003"],"custom_annotation":["7","bigWig"],"details":{"molecule":"genomic DNA"," disease":"none","biomaterial_provider":"Harvard University","biomaterial_type":"Cell Line","line":"WA-7","lineage":"embrionic stem cell","differentiation_stage":"undifferentiated","differentiation_method":"none","passage":"46","medium":"KSR","sex":"Female","batch":"12/25/08","experiment_type":"Histone H3K4me1","extraction_protocol":"SDS lysis","extraction_protocol_type_of_sonicator":"Bioruptor","extraction_protocol_sonication_cycles":"1","chip_protocol":"Bernstein_BROAD_ENCODE_protocol","chip_protocol_chromatin_amount":"10 million cells","chip_protocol_bead_type":"Protein A-Sepharose 4B","chip_protocol_bead_amount":"70 ul bed volume","chip_protocol_antibody_amount":"2-15 ug","chip_antibody":"H3K4Me1","chip_antibody_provider":"Abcam","chip_antibody_catalog":"ab8895","chip_antibody_lot":"383111","original_filename":"GSM537641_BI.ES-WA7.H3K4me1.Solexa-12611.bigWig","Embargo end date":"2011-01-28"},"geolst":["GSM537641"]},{"type":"bigWig","name":"E008 H3K4me1 of H9","url":"http://egg.wustl.edu/d/hg19/GSM667626.bigWig","public":true,"mode":1,"qtc":{"anglescale":1,"pr":238,"pg":236,"pb":51,"nr":255,"ng":0,"nb":0,"pth":"rgb(238,236,51)","nth":"#800000","thtype":2,"thmin":0,"thmax":10,"thpercentile":98,"height":5,"summeth":1,"smooth":7},"annotation":["11104","22010","30002"],"custom_annotation":["7","bigWig"],"details":{"sample_alias":"H9-01"," sample_common_name":"H9 Cell Line","molecule":"genomic DNA","disease":"None","biomaterial_provider":"James Thompson Laboratory","biomaterial_type":"Cell Line","line":"H9","lineage":"Embryonic Stem Cell","differentiation_stage":"None","differentiation_method":"None","passage":"Between 30 and 50","medium":"mTeSER","Sex":"Female","batch":"H9","experiment_type":"Histone H3K4me1","extraction_protocol":"See","extraction_protocol_type_of_sonicator":"Biorupter","extraction_protocol_sonication_cycles":"80","chip_protocol":"See","chip_protocol_chromatin_amount":"500 micrograms","chip_protocol_bead_type":"magnetic anti-rabbit","chip_protocol_bead_amount":"33,500,000","chip_protocol_antibody_amount":"5 micrograms","chip_antibody":"H3K4me1","chip_antibody_provider":"Abcam","chip_antibody_catalog":"ab8895","chip_antibody_lot":"720417","original_filename":"GSM667626_UCSD.H9.H3K4me1.YL123.bigWig","Embargo end date":"2011-11-15"},"geolst":["GSM667626"]},{"type":"bigWig","name":"E008 H3K4me1 of H9","url":"http://egg.wustl.edu/d/hg19/GSM706071_0.bigWig","public":true,"mode":1,"qtc":{"anglescale":1,"pr":238,"pg":236,"pb":51,"nr":255,"ng":0,"nb":0,"pth":"rgb(238,236,51)","nth":"#800000","thtype":2,"thmin":0,"thmax":10,"thpercentile":98,"height":5,"summeth":1,"smooth":7},"annotation":["11104","22010","30002"],"custom_annotation":["7","bigWig"],"details":{"sample_alias":"H9-04","sample_common_name":"H9 Cell Line","molecule":"genomic DNA","disease":"None","biomaterial_provider":"James Thompson Laboratory","biomaterial_type":"Cell Line","line":"H9","lineage":"Embryonic Stem Cell","differentiation_stage":"None","differentiation_method":"None","passage":"Between 30 and 50","medium":"mTeSER","Sex":"Female","batch":"H9-6","experiment_type":"Histone H3K4me1","extraction_protocol":"See","extraction_protocol_type_of_sonicator":"Biorupter","extraction_protocol_sonication_cycles":"80","chip_protocol":"See","chip_protocol_chromatin_amount":"500 micrograms","chip_protocol_bead_type":"magnetic anti-rabbit","chip_protocol_bead_amount":"33,500,000","chip_protocol_antibody_amount":"5 micrograms","chip_antibody":"H3K4me1","chip_antibody_provider":"Abcam","chip_antibody_catalog":"ab8895","chip_antibody_lot":"727417","original_filename":"GSM706071_UCSD.H9.H3K4me1.AK141.bigWig"},"geolst":["GSM706071"]},{"type":"bigWig","name":"E001 H3K4me1 of hES-I3","url":"http://egg.wustl.edu/d/hg19/GSM537668.bigWig","public":true,"mode":1,"qtc":{"anglescale":1,"pr":238,"pg":236,"pb":51,"nr":255,"ng":0,"nb":0,"pth":"rgb(238,236,51)","nth":"#800000","thtype":2,"thmin":0,"thmax":10,"thpercentile":98,"height":5,"summeth":1,"smooth":7},"annotation":["11102","22010","30003"],"custom_annotation":["7","bigWig"],"details":{"molecule":"genomic DNA"," disease":"none","biomaterial_provider":"Harvard University","biomaterial_type":"Cell Line","line":"hES-I3","lineage":"embrionic stem cell","differentiation_stage":"undifferentiated","differentiation_method":"none","passage":"49","medium":"KSR","sex":"Female","batch":"12/25/08","experiment_type":"Histone H3K4me1","extraction_protocol":"SDS lysis","extraction_protocol_type_of_sonicator":"Bioruptor","extraction_protocol_sonication_cycles":"1","chip_protocol":"Bernstein_BROAD_ENCODE_protocol","chip_protocol_chromatin_amount":"10 million cells","chip_protocol_bead_type":"Protein A-Sepharose 4B","chip_protocol_bead_amount":"70 ul bed volume","chip_protocol_antibody_amount":"2-15 ug","chip_antibody":"H3K4Me1","chip_antibody_provider":"Abcam","chip_antibody_catalog":"ab8895","chip_antibody_lot":"383111","original_filename":"GSM537668_BI.ES-I3.H3K4me1.Solexa-15382.bigWig","Embargo end date":"2011-01-28"},"geolst":["GSM537668"]},{"type":"bigWig","name":"E001 H3K4me1 of hES-I3","url":"http://egg.wustl.edu/d/hg19/GSM772789_0.bigWig","public":true,"mode":1,"qtc":{"anglescale":1,"pr":238,"pg":236,"pb":51,"nr":255,"ng":0,"nb":0,"pth":"rgb(238,236,51)","nth":"#800000","thtype":2,"thmin":0,"thmax":10,"thpercentile":98,"height":5,"summeth":1,"smooth":7},"annotation":["11102","22010","30003"],"custom_annotation":["7","bigWig"],"details":{"sample_alias":"60","sample_common_name":"ES-I3 Cell Line","lineage":"embrionic stem cell","medium":"TESR","molecule":"genomic DNA","disease":"none","passage":"45","line":"hES I3 TESR","differentiation_method":"NA","batch":"hES I3 TESR-1","biomaterial_type":"Cell Line","differentiation_stage":"undifferentiated","Sex":"Female","biomaterial_provider":"Harvard University","chip_protocol_bead_type":"Protein A-Sepharose 4B","chip_antibody":"H3K4Me1","chip_protocol_chromatin_amount":"10 million cells","extraction_protocol":"SDS lysis","chip_protocol_antibody_amount":"2-15 ug","chip_protocol_bead_amount":"70 ul bed volume","chip_protocol":"Bernstein_BROAD_ENCODE_protocol","extraction_protocol_sonication_cycles":"1","chip_antibody_catalog":"ab8895","chip_antibody_provider":"Abcam","chip_antibody_lot":"659352","experiment_type":"Histone H3K4me1","extraction_protocol_type_of_sonicator":"Bioruptor","original_filename":"GSM772789_BI.ES-I3.H3K4me1.Lib_MC_20100211_02--ChIP_MC_20100208_02_hES_I3_TESR_H3K4Me1"},"geolst":["GSM772789"]},{"type":"bigWig","name":"E015 H3K4me1 of HUES6","url":"http://egg.wustl.edu/d/hg19/GSM669885.bigWig","public":true,"mode":1,"qtc":{"anglescale":1,"pr":238,"pg":236,"pb":51,"nr":255,"ng":0,"nb":0,"pth":"rgb(238,236,51)","nth":"#800000","thtype":2,"thmin":0,"thmax":10,"thpercentile":98,"height":5,"summeth":1,"smooth":7},"annotation":["11120","22010","30003"],"custom_annotation":["7","bigWig"],"details":{"sample_alias":"199"," sample_common_name":"HUES6 Cell Line","lineage":"embrionic stem cell","medium":"KSR","molecule":"genomic DNA","disease":"none","passage":"NA","line":"HUES 6","differentiation_method":"NA","batch":"ES cell HUES_6-1","biomaterial_type":"Cell Line","differentiation_stage":"undifferentiated","Sex":"Unknown","biomaterial_provider":"Harvard University","chip_protocol_bead_type":"Protein A-Sepharose 4B","chip_antibody":"H3K4Me1","chip_protocol_chromatin_amount":"10 million cells","extraction_protocol":"SDS lysis","chip_protocol_antibody_amount":"2-15 ug","chip_protocol_bead_amount":"70 ul bed volume","chip_protocol":"Bernstein_BROAD_ENCODE_protocol","extraction_protocol_sonication_cycles":"1","chip_antibody_catalog":"ab8895","chip_antibody_provider":"Abcam","chip_antibody_lot":"151302","experiment_type":"Histone H3K4me1","extraction_protocol_type_of_sonicator":"Bioruptor","original_filename":"GSM669885_BI.HUES6.H3K4me1.Lib_XZ_20101004_01--ChIP_XZ_20100930_01_ES_cell_HUES_6_H3K4Me1.bigWig","Embargo end date":"2011-12-31"},"geolst":["GSM669885"]},{"type":"bigWig","name":"E015 H3K4me1 of HUES6","url":"http://egg.wustl.edu/d/hg19/GSM669891.bigWig","public":true,"mode":1,"qtc":{"anglescale":1,"pr":238,"pg":236,"pb":51,"nr":255,"ng":0,"nb":0,"pth":"rgb(238,236,51)","nth":"#800000","thtype":2,"thmin":0,"thmax":10,"thpercentile":98,"height":5,"summeth":1,"smooth":7},"annotation":["11120","22010","30003"],"custom_annotation":["7","bigWig"],"details":{"sample_alias":"207"," sample_common_name":"HUES6 Cell Line","lineage":"embrionic stem cell","medium":"KSR","molecule":"genomic DNA","disease":"none","passage":"NA","line":"HUES 6","differentiation_method":"NA","batch":"ES cell HUES_6-2","biomaterial_type":"Cell Line","differentiation_stage":"undifferentiated","Sex":"Unknown","biomaterial_provider":"Harvard University","chip_protocol_bead_type":"Protein A-Sepharose 4B","chip_antibody":"H3K4Me1","chip_protocol_chromatin_amount":"10 million cells","extraction_protocol":"SDS lysis","chip_protocol_antibody_amount":"2-15 ug","chip_protocol_bead_amount":"70 ul bed volume","chip_protocol":"Bernstein_BROAD_ENCODE_protocol","extraction_protocol_sonication_cycles":"1","chip_antibody_catalog":"ab8895","chip_antibody_provider":"Abcam","chip_antibody_lot":"151302","experiment_type":"Histone H3K4me1","extraction_protocol_type_of_sonicator":"Bioruptor","original_filename":"GSM669891_BI.HUES6.H3K4me1.Lib_XZ_20101004_08--ChIP_XZ_20100930_08_ES_cell_HUES_6_H3K4Me1.bigWig","Embargo end date":"2011-12-31"},"geolst":["GSM669891"]},{"type":"bigWig","name":"E014 H3K4me1 of HUES48","url":"http://egg.wustl.edu/d/hg19/GSM669954.bigWig","public":true,"mode":1,"qtc":{"anglescale":1,"pr":238,"pg":236,"pb":51,"nr":255,"ng":0,"nb":0,"pth":"rgb(238,236,51)","nth":"#800000","thtype":2,"thmin":0,"thmax":10,"thpercentile":98,"height":5,"summeth":1,"smooth":7},"annotation":["11106","22010","30003"],"custom_annotation":["7","bigWig"],"details":{"sample_alias":"197"," sample_common_name":"HUES48 Cell Line","lineage":"embrionic stem cell","medium":"KSR","molecule":"genomic DNA","disease":"none","passage":"NA","line":"HUES48","differentiation_method":"NA","batch":"ES cell HUES_48-1","biomaterial_type":"Cell Line","differentiation_stage":"undifferentiated","Sex":"Unknown","biomaterial_provider":"Harvard University","chip_protocol_bead_type":"Protein A-Sepharose 4B","chip_antibody":"H3K4Me1","chip_protocol_chromatin_amount":"10 million cells","extraction_protocol":"SDS lysis","chip_protocol_antibody_amount":"2-15 ug","chip_protocol_bead_amount":"70 ul bed volume","chip_protocol":"Bernstein_BROAD_ENCODE_protocol","extraction_protocol_sonication_cycles":"1","chip_antibody_catalog":"ab8895","chip_antibody_provider":"Abcam","chip_antibody_lot":"659352","experiment_type":"Histone H3K4me1","extraction_protocol_type_of_sonicator":"Bioruptor","original_filename":"GSM669954_BI.HUES48.H3K4me1.Lib_MC_20101025_07--ChIP_MC_20101020_07_ES_cell_HUES_48_H3K4Me1.bigWig","Embargo end date":"2011-12-31"},"geolst":["GSM669954"]},{"type":"bigWig","name":"E014 H3K4me1 of HUES48","url":"http://egg.wustl.edu/d/hg19/GSM772793_0.bigWig","public":true,"mode":1,"qtc":{"anglescale":1,"pr":238,"pg":236,"pb":51,"nr":255,"ng":0,"nb":0,"pth":"rgb(238,236,51)","nth":"#800000","thtype":2,"thmin":0,"thmax":10,"thpercentile":98,"height":5,"summeth":1,"smooth":7},"annotation":["11106","22010","30003"],"custom_annotation":["7","bigWig"],"details":{"sample_alias":"201","sample_common_name":"HUES48 Cell Line","lineage":"embrionic stem cell","medium":"KSR","molecule":"genomic DNA","disease":"none","passage":"NA","line":"HUES48","differentiation_method":"NA","batch":"ES cell HUES_48-2","biomaterial_type":"Cell Line","differentiation_stage":"undifferentiated","Sex":"Unknown","biomaterial_provider":"Harvard University","chip_protocol_bead_type":"Protein A-Sepharose 4B","chip_antibody":"H3K4Me1","chip_protocol_chromatin_amount":"10 million cells","extraction_protocol":"SDS lysis","chip_protocol_antibody_amount":"2-15 ug","chip_protocol_bead_amount":"70 ul bed volume","chip_protocol":"Bernstein_BROAD_ENCODE_protocol","extraction_protocol_sonication_cycles":"1","chip_antibody_catalog":"ab8895","chip_antibody_provider":"Abcam","chip_antibody_lot":"659352","experiment_type":"Histone H3K4me1","extraction_protocol_type_of_sonicator":"Bioruptor","original_filename":"GSM772793_BI.HUES48.H3K4me1.Lib_EpiLabSPL_Row_1713"},"geolst":["GSM772793"]},{"type":"bigWig","name":"E016 H3K4me1 of HUES64","url":"http://egg.wustl.edu/d/hg19/GSM669966.bigWig","public":true,"mode":1,"qtc":{"anglescale":1,"pr":238,"pg":236,"pb":51,"nr":255,"ng":0,"nb":0,"pth":"rgb(238,236,51)","nth":"#800000","thtype":2,"thmin":0,"thmax":10,"thpercentile":98,"height":5,"summeth":1,"smooth":7},"annotation":["11107","22010","30003"],"custom_annotation":["7","bigWig"],"details":{"sample_alias":"196"," sample_common_name":"HUES64 Cell Line","lineage":"embrionic stem cell","medium":"KSR","molecule":"genomic DNA","disease":"none","passage":"NA","line":"HUES64","differentiation_method":"NA","batch":"ES cell HUES_64-1","biomaterial_type":"Cell Line","differentiation_stage":"undifferentiated","Sex":"Unknown","biomaterial_provider":"Harvard University","chip_protocol_bead_type":"Protein A-Sepharose 4B","chip_antibody":"H3K4Me1","chip_protocol_chromatin_amount":"10 million cells","extraction_protocol":"SDS lysis","chip_protocol_antibody_amount":"2-15 ug","chip_protocol_bead_amount":"70 ul bed volume","chip_protocol":"Bernstein_BROAD_ENCODE_protocol","extraction_protocol_sonication_cycles":"1","chip_antibody_catalog":"ab8895","chip_antibody_provider":"Abcam","chip_antibody_lot":"659352","experiment_type":"Histone H3K4me1","extraction_protocol_type_of_sonicator":"Bioruptor","original_filename":"GSM669966_BI.HUES64.H3K4me1.Lib_MC_20101025_01--ChIP_MC_20101020_01_ES_cell_HUES_64_H3K4Me1.bigWig","Embargo end date":"2011-12-31"},"geolst":["GSM669966"]},{"type":"bigWig","name":"E016 H3K4me1 of HUES64","url":"http://egg.wustl.edu/d/hg19/GSM772800_0.bigWig","public":true,"mode":1,"qtc":{"anglescale":1,"pr":238,"pg":236,"pb":51,"nr":255,"ng":0,"nb":0,"pth":"rgb(238,236,51)","nth":"#800000","thtype":2,"thmin":0,"thmax":10,"thpercentile":98,"height":5,"summeth":1,"smooth":7},"annotation":["11107","22010","30003"],"custom_annotation":["7","bigWig"],"details":{"sample_alias":"202","sample_common_name":"HUES64 Cell Line","lineage":"embrionic stem cell","medium":"KSR","molecule":"genomic DNA","disease":"none","passage":"NA","line":"HUES64","differentiation_method":"NA","batch":"ES cell HUES_64-2","biomaterial_type":"Cell Line","differentiation_stage":"undifferentiated","Sex":"Unknown","biomaterial_provider":"Harvard University","chip_protocol_bead_type":"Protein A-Sepharose 4B","chip_antibody":"H3K4Me1","chip_protocol_chromatin_amount":"10 million cells","extraction_protocol":"SDS lysis","chip_protocol_antibody_amount":"2-15 ug","chip_protocol_bead_amount":"70 ul bed volume","chip_protocol":"Bernstein_BROAD_ENCODE_protocol","extraction_protocol_sonication_cycles":"1","chip_antibody_catalog":"ab8895","chip_antibody_provider":"Abcam","chip_antibody_lot":"659352","experiment_type":"Histone H3K4me1","extraction_protocol_type_of_sonicator":"Bioruptor","original_filename":"GSM772800_BI.HUES64.H3K4me1.Lib_EpiLabSPL_Row_1719"},"geolst":["GSM772800"]},{"type":"bigWig","name":"E003 H3K4me1 of H1","url":"http://egg.wustl.edu/d/hg19/GSM409307_1.bigWig","public":true,"mode":1,"qtc":{"anglescale":1,"pr":238,"pg":236,"pb":51,"nr":255,"ng":0,"nb":0,"pth":"rgb(238,236,51)","nth":"#800000","thtype":2,"thmin":0,"thmax":10,"thpercentile":98,"height":5,"summeth":1,"smooth":7},"annotation":["11101","22010","30002"],"custom_annotation":["7","bigWig"],"details":{"molecule":"genomic DNA"," disease":"None","biomaterial_provider":"Cellular Dynamics International","biomaterial_type":"Cell Line","line":"H1","lineage":"Embryonic Stem Cell","differentiation_stage":"None","differentiation_method":"None","passage":"Between 30 and 50","medium":"mTeSER","Sex":"Male","experiment_type":"Histone H3K4me1","extraction_protocol":"See","extraction_protocol_type_of_sonicator":"Branson Tip Sonicator","extraction_protocol_sonication_cycles":"30","chip_protocol":"See","chip_protocol_chromatin_amount":"500 micrograms","chip_protocol_bead_type":"magnetic anti-rabbit","chip_protocol_bead_amount":"33,500,000","chip_protocol_antibody_amount":"5 micrograms","chip_antibody":"H3K4me1","chip_antibody_provider":"Abcam","chip_antibody_catalog":"ab8895","chip_antibody_lot":"535659","original_filename":"GSM409307_UCSD.H1.H3K4me1.LL228.bigWig","Embargo end date":"2010-05-03"},"geolst":["GSM409307"]},{"type":"bigWig","name":"E003 H3K4me1 of H1","url":"http://egg.wustl.edu/d/hg19/GSM433177.bigWig","public":true,"mode":1,"qtc":{"anglescale":1,"pr":238,"pg":236,"pb":51,"nr":255,"ng":0,"nb":0,"pth":"rgb(238,236,51)","nth":"#800000","thtype":2,"thmin":0,"thmax":10,"thpercentile":98,"height":5,"summeth":1,"smooth":7},"annotation":["11101","22010","30003"],"custom_annotation":["7","bigWig"],"details":{"molecule":"genomic DNA"," disease":"none","biomaterial_provider":"Cellular Dynamics","biomaterial_type":"Cell Line","line":"H1","lineage":"undifferentiated","differentiation_stage":"stage_zero","differentiation_method":"none","passage":"42","medium":"TESR","sex":"Unknown","experiment_type":"Histone H3K4me1","extraction_protocol":"SDS lysis","extraction_protocol_type_of_sonicator":"Bioruptor","extraction_protocol_sonication_cycles":"1","chip_protocol":"standard","chip_protocol_chromatin_amount":"standard","chip_protocol_bead_type":"standard","chip_protocol_bead_amount":"standard","chip_protocol_antibody_amount":"standard","chip_antibody":"H3K4Me1","chip_antibody_provider":"Abcam","chip_antibody_catalog":"ab8895","chip_antibody_lot":"383111","original_filename":"GSM433177_BI.H1.H3K4me1.Solexa-10529.bigWig","Embargo end date":"2010-05-05"},"geolst":["GSM433177"]},{"type":"bigWig","name":"E003 H3K4me1 of H1","url":"http://egg.wustl.edu/d/hg19/GSM434762.bigWig","public":true,"mode":1,"qtc":{"anglescale":1,"pr":238,"pg":236,"pb":51,"nr":255,"ng":0,"nb":0,"pth":"rgb(238,236,51)","nth":"#800000","thtype":2,"thmin":0,"thmax":10,"thpercentile":98,"height":5,"summeth":1,"smooth":7},"annotation":["11101","22010","30014"],"custom_annotation":["7","bigWig"],"details":{"batch":"#1"," molecule":"genomic DNA","disease":"None","biomaterial_provider":"Cellular Dynamics International","biomaterial_type":"Cell Line","line":"H1 (WA01)","lineage":"NA","differentiation_stage":"undifferentiated","differentiation_method":"NA","passage":"NA","medium":"NA","sex":"Male","experiment_type":"Histone H3K4me1","extraction_protocol":"NA","extraction_protocol_type_of_sonicator":"Bioruptor","extraction_protocol_sonication_cycles":"25 min","chip_protocol":"NA","chip_protocol_chromatin_amount":"35.3 ug","chip_protocol_bead_type":"Protein G Mag Beads","chip_protocol_bead_amount":"30 ul","chip_protocol_antibody_amount":"NA","chip_antibody":"H3K4me1","chip_antibody_provider":"Abcam","chip_antibody_catalog":"ab8895","chip_antibody_lot":"535659","original_filename":"GSM434762_UCSF-UBC.H1.H3K4me1.H1EScd1-me1K4-D.bigWig","Embargo end date":"2010-05-03"},"geolst":["GSM434762"]},{"type":"bigWig","name":"E003 H3K4me1 of H1","url":"http://egg.wustl.edu/d/hg19/GSM466739.bigWig","public":true,"mode":1,"qtc":{"anglescale":1,"pr":238,"pg":236,"pb":51,"nr":255,"ng":0,"nb":0,"pth":"rgb(238,236,51)","nth":"#800000","thtype":2,"thmin":0,"thmax":10,"thpercentile":98,"height":5,"summeth":1,"smooth":7},"annotation":["11101","22010","30002"],"custom_annotation":["7","bigWig"],"details":{"molecule":"genomic DNA"," disease":"None","biomaterial_provider":"James Thompson Laboratory","biomaterial_type":"Cell Line","line":"H1","lineage":"Embryonic Stem Cell","differentiation_stage":"None","differentiation_method":"None","passage":"Between 25 and 45","medium":"mTeSER","Sex":"Male","batch":"1","experiment_type":"Histone H3K4me1","extraction_protocol":"See","extraction_protocol_type_of_sonicator":"Branson Tip Sonicator","extraction_protocol_sonication_cycles":"30","chip_protocol":"See","chip_protocol_chromatin_amount":"500 micrograms","chip_protocol_bead_type":"magnetic anti-rabbit","chip_protocol_bead_amount":"33,500,000","chip_protocol_antibody_amount":"5 micrograms","chip_antibody":"H3K4me1","chip_antibody_provider":"Upstate","chip_antibody_catalog":"07-436","chip_antibody_lot":"DAM1400139","original_filename":"GSM466739_UCSD.H1.H3K4me1.LL311.bigWig","Embargo end date":"2010-10-07"},"geolst":["GSM466739"]},{"type":"bigWig","name":"E003 H3K4me1 of H1","url":"http://egg.wustl.edu/d/hg19/GSM537679.bigWig","public":true,"mode":1,"qtc":{"anglescale":1,"pr":238,"pg":236,"pb":51,"nr":255,"ng":0,"nb":0,"pth":"rgb(238,236,51)","nth":"#800000","thtype":2,"thmin":0,"thmax":10,"thpercentile":98,"height":5,"summeth":1,"smooth":7},"annotation":["11101","22010","30003"],"custom_annotation":["7","bigWig"],"details":{"molecule":"genomic DNA"," disease":"none","biomaterial_provider":"Cellular Dynamics","biomaterial_type":"Cell Line","line":"H1","lineage":"undifferentiated","differentiation_stage":"stage_zero","differentiation_method":"none","passage":"32.0","medium":"TESR","sex":"Male","batch":"0/0/00","experiment_type":"Histone H3K4me1","extraction_protocol":"SDS lysis","extraction_protocol_type_of_sonicator":"Bioruptor","extraction_protocol_sonication_cycles":"1","chip_protocol":"Bernstein_BROAD_ENCODE_protocol","chip_protocol_chromatin_amount":"10 million cells","chip_protocol_bead_type":"Protein A-Sepharose 4B","chip_protocol_bead_amount":"70 ul bed volume","chip_protocol_antibody_amount":"2-15 ug","chip_antibody":"H3K4Me1","chip_antibody_provider":"Abcam","chip_antibody_catalog":"ab8895","chip_antibody_lot":"383111","original_filename":"GSM537679_BI.H1.H3K4me1.Solexa-13061.bigWig","Embargo end date":"2011-01-28"},"geolst":["GSM537679"]},{"type":"bigWig","name":"E003 H3K4me1 of H1","url":"http://egg.wustl.edu/d/hg19/GSM605312.bigWig","public":true,"mode":1,"qtc":{"anglescale":1,"pr":238,"pg":236,"pb":51,"nr":255,"ng":0,"nb":0,"pth":"rgb(238,236,51)","nth":"#800000","thtype":2,"thmin":0,"thmax":10,"thpercentile":98,"height":5,"summeth":1,"smooth":7},"annotation":["11101","22010","30002"],"custom_annotation":["7","bigWig"],"details":{"molecule":"genomic DNA"," disease":"None","biomaterial_provider":"James Thompson Laboratory","biomaterial_type":"Cell Line","line":"H1","lineage":"Embryonic Stem Cell","differentiation_stage":"None","differentiation_method":"None","passage":"27","medium":"mTeSER","Sex":"Male","batch":"H1Jp27(16)","experiment_type":"Histone H3K4me1","extraction_protocol":"See","extraction_protocol_type_of_sonicator":"Biorupter","extraction_protocol_sonication_cycles":"80","chip_protocol":"See","chip_protocol_chromatin_amount":"500 micrograms","chip_protocol_bead_type":"magnetic anti-rabbit","chip_protocol_bead_amount":"33,500,000","chip_protocol_antibody_amount":"5 micrograms","chip_antibody":"H3K4me1","chip_antibody_provider":"Abcam","chip_antibody_catalog":"ab8895","chip_antibody_lot":"720417","original_filename":"GSM605312_UCSD.H1.H3K4me1.YL131.bigWig","Embargo end date":"2011-07-07"},"geolst":["GSM605312"]},{"type":"bigWig","name":"E024 H3K4me1 Embryonic stem cell","url":"http://egg.wustl.edu/d/hg19/GSM941748_1.bigWig","public":true,"mode":1,"qtc":{"anglescale":1,"pr":238,"pg":236,"pb":51,"nr":255,"ng":0,"nb":0,"pth":"rgb(238,236,51)","nth":"#800000","thtype":2,"thmin":0,"thmax":10,"thpercentile":98,"height":5,"summeth":1,"smooth":7},"annotation":["11125","22010","30014"],"custom_annotation":["7","bigWig"],"details":{"sample alias":"UCSF-4* Cell Line hESC","sample common name":"UCSF-4* Cell Line","molecule":"genomic DNA","disease":"None","biomaterial_provider":"Susan Fisher Lab","biomaterial_type":"Cell Line","line":"UCSF-4*","lineage":"Embryonic stem cell","differentiation_stage":"Undifferentiated","differentiation_method":"NA","passage":"14","medium":"mTeSR","Sex":"Female","batch":"1","experiment_type":"Histone H3K4me1","extraction_protocol":"BCCAGSC ChIP Standard Operating Procedure","extraction_protocol_type_of_sonicator":"Fisher 550 Sonic Dismembrator","extraction_protocol_sonication_cycles":"10 min","chip_protocol":"BCCAGSC ChIP Standard Operating Procedure","chip_protocol_chromatin_amount":"5 ug","chip_protocol_bead_type":"Sepharose A/G beads","chip_protocol_bead_amount":"20 ul","chip_protocol_antibody_amount":"5 ug","size_fraction":"106-348bp","chip_antibody":"H3K4me1","chip_antibody_provider":"Diagenode","chip_antibody_catalog":"pAb-037-050","chip_antibody_lot":"A399-002341P","original_filename":"UCSF-UBC.UCSF-4star.H3K4me1.A14669.bigWig"},"geolst":["GSM941748"]},{"type":"bigWig","name":"E020 H3K4me1 of hiPS-20b","url":"http://egg.wustl.edu/d/hg19/GSM772804_0.bigWig","public":true,"mode":1,"qtc":{"anglescale":1,"pr":238,"pg":236,"pb":51,"nr":255,"ng":0,"nb":0,"pth":"rgb(238,236,51)","nth":"#800000","thtype":2,"thmin":0,"thmax":10,"thpercentile":98,"height":5,"summeth":1,"smooth":7},"annotation":["11205","22010","30003"],"custom_annotation":["20","bigWig"],"details":{"sample_alias":"66.0","sample_common_name":"iPS-20b Cell Line","molecule":"genomic DNA","disease":"none","biomaterial_provider":"Harvard University","biomaterial_type":"Cell Line","line":"hiPS-20b","lineage":"induced pluripotent cells","differentiation_stage":"undifferentiated","differentiation_method":"none","passage":"20.0","medium":"KSR","Sex":"Male","batch":"0/0/00","chip_protocol_bead_type":"Protein A-Sepharose 4B","chip_antibody":"H3K4Me1","chip_protocol_chromatin_amount":"10 million cells","extraction_protocol":"SDS lysis","chip_protocol_antibody_amount":"2-15 ug","chip_protocol_bead_amount":"70 ul bed volume","chip_protocol":"Bernstein_BROAD_ENCODE_protocol","extraction_protocol_sonication_cycles":"1","chip_antibody_catalog":"ab8895","chip_antibody_provider":"Abcam","chip_antibody_lot":"659352","experiment_type":"Histone H3K4me1","extraction_protocol_type_of_sonicator":"Bioruptor","original_filename":"GSM772804_BI.iPS-20b.H3K4me1.Lib_MC_20100211_03--ChIP_MC_20100208_03_hiPS-20b_H3K4Me1"},"geolst":["GSM772804"]},{"type":"bigWig","name":"E020 H3K4me1 of hiPS-20b","url":"http://egg.wustl.edu/d/hg19/GSM772845_0.bigWig","public":true,"mode":1,"qtc":{"anglescale":1,"pr":238,"pg":236,"pb":51,"nr":255,"ng":0,"nb":0,"pth":"rgb(238,236,51)","nth":"#800000","thtype":2,"thmin":0,"thmax":10,"thpercentile":98,"height":5,"summeth":1,"smooth":7},"annotation":["11205","22010","30003"],"custom_annotation":["20","bigWig"],"details":{"sample_alias":"BioSam 174","sample_common_name":"iPS-20b Cell Line","lineage":"induced pluripotent cells","medium":"10% KOSR (Invitrogen)","molecule":"genomic DNA","disease":"presumed normal","passage":"p14 and p15 mixed","line":"hiPS-20b","differentiation_method":"NA","batch":"BioSAli 177","biomaterial_type":"Cell Line","differentiation_stage":"undifferentiated","Sex":"Unknown","biomaterial_provider":"Harvard","chip_protocol_bead_type":"Protein A-Sepharose 4B","chip_antibody":"H3K4me1","chip_protocol_chromatin_amount":"0.5 to 3 million cells","extraction_protocol":"cell/nuclei lysis","chip_protocol_antibody_amount":"~1 ug","chip_protocol_bead_amount":"10 ul bed volume","chip_protocol":"Bernstein_BROAD_ENCODE_protocol","extraction_protocol_sonication_cycles":"1","chip_antibody_catalog":"ab8895","chip_antibody_provider":"Abcam","chip_antibody_lot":"659352","experiment_type":"Histone H3K4me1","extraction_protocol_type_of_sonicator":"Branson","original_filename":"GSM772845_BI.iPS-20b.H3K4me1.DNA_Lib_354"},"geolst":["GSM772845"]},{"type":"bigWig","name":"E018 H3K4me1 of hiPS-15b","url":"http://egg.wustl.edu/d/hg19/GSM772767_0.bigWig","public":true,"mode":1,"qtc":{"anglescale":1,"pr":238,"pg":236,"pb":51,"nr":255,"ng":0,"nb":0,"pth":"rgb(238,236,51)","nth":"#800000","thtype":2,"thmin":0,"thmax":10,"thpercentile":98,"height":5,"summeth":1,"smooth":7},"annotation":["11206","22010","30003"],"custom_annotation":["20","bigWig"],"details":{"sample_alias":"62.0","sample_common_name":"iPS-15b Cell Line","molecule":"genomic DNA","disease":"none","biomaterial_provider":"Harvard University","biomaterial_type":"Cell Line","line":"hiPS-15b","lineage":"induced pluripotent cells","differentiation_stage":"undifferentiated","differentiation_method":"none","passage":"33.0","medium":"KSR","Sex":"Female","batch":"0/0/00","chip_protocol_bead_type":"Protein A-Sepharose 4B","chip_antibody":"H3K4Me1","chip_protocol_chromatin_amount":"10 million cells","extraction_protocol":"SDS lysis","chip_protocol_antibody_amount":"2-15 ug","chip_protocol_bead_amount":"70 ul bed volume","chip_protocol":"Bernstein_BROAD_ENCODE_protocol","extraction_protocol_sonication_cycles":"1","chip_antibody_catalog":"ab8895","chip_antibody_provider":"Abcam","chip_antibody_lot":"659352","experiment_type":"Histone H3K4me1","extraction_protocol_type_of_sonicator":"Bioruptor","original_filename":"GSM772767_BI.iPS-15b.H3K4me1.Lib_MC_20100211_04--ChIP_MC_20100208_04_hiPS-15b_H3K4Me1"},"geolst":["GSM772767"]},{"type":"bigWig","name":"E021 H3K4me1 of iPS DF 6.9 Cell Line","url":"http://egg.wustl.edu/d/hg19/GSM706073_0.bigWig","public":true,"mode":1,"qtc":{"anglescale":1,"pr":238,"pg":236,"pb":51,"nr":255,"ng":0,"nb":0,"pth":"rgb(238,236,51)","nth":"#800000","thtype":2,"thmin":0,"thmax":10,"thpercentile":98,"height":5,"summeth":1,"smooth":7},"annotation":["11216","22010","30002"],"custom_annotation":["20","bigWig"],"details":{"sample_alias":"iPS-6.9-01","sample_common_name":"iPS DF 6.9 Cell Line","molecule":"genomic DNA","disease":"None","biomaterial_provider":"James Thompson Laboratory","biomaterial_type":"Cell Line","line":"iPS 6.9","lineage":"Induced pluripotent stem cell line derived from foreskin fibroblasts","differentiation_stage":"Induced pluripotent stem cell","differentiation_method":"As described by Yu, J. et al. Human induced pluripotent stem cells free of vector and transgene sequences. Science 324, 797-801 (2009).","passage":"33","medium":"mTeSR","Sex":"Male","batch":"iPSC 6.9","experiment_type":"Histone H3K4me1","extraction_protocol":"See","extraction_protocol_type_of_sonicator":"Biorupter","extraction_protocol_sonication_cycles":"80","chip_protocol":"See","chip_protocol_chromatin_amount":"500 micrograms","chip_protocol_bead_type":"magnetic anti-rabbit","chip_protocol_bead_amount":"33,500,000","chip_protocol_antibody_amount":"5 micrograms","chip_antibody":"H3K4me1","chip_antibody_provider":"Abcam","chip_antibody_catalog":"Ab8895","chip_antibody_lot":"720417","original_filename":"GSM706073_UCSD.iPS_DF_6.9.H3K4me1.SK397.bigWig"},"geolst":["GSM706073"]},{"type":"bigWig","name":"E021 H3K4me1 of iPS DF 6.9 Cell Line","url":"http://egg.wustl.edu/d/hg19/GSM752980_0.bigWig","public":true,"mode":1,"qtc":{"anglescale":1,"pr":238,"pg":236,"pb":51,"nr":255,"ng":0,"nb":0,"pth":"rgb(238,236,51)","nth":"#800000","thtype":2,"thmin":0,"thmax":10,"thpercentile":98,"height":5,"summeth":1,"smooth":7},"annotation":["11216","22010","30002"],"custom_annotation":["20","bigWig"],"details":{"sample_alias":"iPS-6.9-02","sample_common_name":"iPS DF 6.9 Cell Line","molecule":"genomic DNA","disease":"None","biomaterial_provider":"James Thomson Laboratory","biomaterial_type":"Cell Line","line":"iPS 6.9","lineage":"Induced pluripotent stem cell line derived from foreskin fibroblasts","differentiation_stage":"Induced pluripotent stem cell","differentiation_method":"As described by Yu, J. et al. Human induced pluripotent stem cells free of vector and transgene sequences. Science 324, 797-801 (2009).","passage":"27","medium":"mTeSR","Sex":"Male","batch":"iPSC 6.9-2","experiment_type":"Histone H3K4me1","extraction_protocol":"See","extraction_protocol_type_of_sonicator":"Biorupter","extraction_protocol_sonication_cycles":"80","chip_protocol":"See","chip_protocol_chromatin_amount":"500 micrograms","chip_protocol_bead_type":"magnetic anti-rabbit","chip_protocol_bead_amount":"33,500,000","chip_protocol_antibody_amount":"5 micrograms","chip_antibody":"H3K4me1","chip_antibody_provider":"Abcam","chip_antibody_catalog":"Ab8895","chip_antibody_lot":"720417","original_filename":"GSM752980_UCSD.iPS_DF_6.9.H3K4me1.SK469.bigWig"},"geolst":["GSM752980"]},{"type":"bigWig","name":"E022 H3K4me1 of iPS DF 19.11 Cell Line","url":"http://egg.wustl.edu/d/hg19/GSM706072_0.bigWig","public":true,"mode":1,"qtc":{"anglescale":1,"pr":238,"pg":236,"pb":51,"nr":255,"ng":0,"nb":0,"pth":"rgb(238,236,51)","nth":"#800000","thtype":2,"thmin":0,"thmax":10,"thpercentile":98,"height":5,"summeth":1,"smooth":7},"annotation":["11213","22010","30002"],"custom_annotation":["20","bigWig"],"details":{"sample_alias":"iPS-19.11-01","sample_common_name":"iPS DF 19.11 Cell Line","molecule":"genomic DNA","disease":"None","biomaterial_provider":"James Thompson Laboratory","biomaterial_type":"Cell Line","line":"iPS 19.11","lineage":"Induced pluripotent stem cell line derived from foreskin fibroblasts","differentiation_stage":"Induced pluripotent stem cell","differentiation_method":"As described by Yu, J. et al. Human induced pluripotent stem cells free of vector and transgene sequences. Science 324, 797-801 (2009).","passage":"Between 30 and 40","medium":"mTeSR","Sex":"Male","batch":"iPSC 19.11","experiment_type":"Histone H3K4me1","extraction_protocol":"See","extraction_protocol_type_of_sonicator":"Biorupter","extraction_protocol_sonication_cycles":"80","chip_protocol":"See","chip_protocol_chromatin_amount":"500 micrograms","chip_protocol_bead_type":"magnetic anti-rabbit","chip_protocol_bead_amount":"33,500,000","chip_protocol_antibody_amount":"5 micrograms","chip_antibody":"H3K4me1","chip_antibody_provider":"Abcam","chip_antibody_catalog":"Ab8895","chip_antibody_lot":"720417","original_filename":"GSM706072_UCSD.iPS_DF_19.11.H3K4me1.SK401.bigWig"},"geolst":["GSM706072"]},{"type":"bigWig","name":"E022 H3K4me1 of iPS DF 19.11 Cell Line","url":"http://egg.wustl.edu/d/hg19/GSM752979_0.bigWig","public":true,"mode":1,"qtc":{"anglescale":1,"pr":238,"pg":236,"pb":51,"nr":255,"ng":0,"nb":0,"pth":"rgb(238,236,51)","nth":"#800000","thtype":2,"thmin":0,"thmax":10,"thpercentile":98,"height":5,"summeth":1,"smooth":7},"annotation":["11213","22010","30002"],"custom_annotation":["20","bigWig"],"details":{"sample_alias":"iPS-19.11-02","sample_common_name":"iPS DF 19.11 Cell Line","molecule":"genomic DNA","disease":"None","biomaterial_provider":"James Thomson Laboratory","biomaterial_type":"Cell Line","line":"iPS 19.11","lineage":"Induced pluripotent stem cell line derived from foreskin fibroblasts","differentiation_stage":"Induced pluripotent stem cell","differentiation_method":"As described by Yu, J. et al. Human induced pluripotent stem cells free of vector and transgene sequences. Science 324, 797-801 (2009).","passage":"25","medium":"mTeSR","Sex":"Male","batch":"iPSC 19.11-2","experiment_type":"Histone H3K4me1","extraction_protocol":"See","extraction_protocol_type_of_sonicator":"Biorupter","extraction_protocol_sonication_cycles":"80","chip_protocol":"See","chip_protocol_chromatin_amount":"500 micrograms","chip_protocol_bead_type":"magnetic anti-rabbit","chip_protocol_bead_amount":"33,500,000","chip_protocol_antibody_amount":"5 micrograms","chip_antibody":"H3K4me1","chip_antibody_provider":"Abcam","chip_antibody_catalog":"Ab8895","chip_antibody_lot":"720417","original_filename":"GSM752979_UCSD.iPS_DF_19.11.H3K4me1.SK473.bigWig"},"geolst":["GSM752979"]},{"type":"bigWig","name":"E007 H3K4me1 of H1 Derived Neuronal Progenitor Cultured Cells","url":"http://egg.wustl.edu/d/hg19/GSM818040.bigWig","public":true,"mode":1,"qtc":{"anglescale":1,"pr":238,"pg":236,"pb":51,"nr":255,"ng":0,"nb":0,"pth":"rgb(238,236,51)","nth":"#800000","thtype":2,"thmin":0,"thmax":10,"thpercentile":98,"height":5,"summeth":1,"smooth":7},"annotation":["11309","22010","30002"],"custom_annotation":["6","bigWig"],"details":{"sample_alias":"NPC-05","sample_common_name":"H1 Derived Neuronal Progenitor Cultured Cells","molecule":"genomic DNA","disease":"None","biomaterial_provider":"James Thomson Laboratory","biomaterial_type":"Cell Line","line":"H1","lineage":"Embryonic Stem Cell","differentiation_stage":"Embryonic stem cell differentiated into neural progenitor cells","differentiation_method":"Publication in progress","passage":"27","medium":"Publication in progress","Sex":"Male","batch":"NPC-5","experiment_type":"Histone H3K4me1","extraction_protocol":"See ","extraction_protocol_type_of_sonicator":"Biorupter","extraction_protocol_sonication_cycles":"80","chip_protocol":"See ","chip_protocol_chromatin_amount":"500 micrograms","chip_protocol_bead_type":"magnetic anti-rabbit","chip_protocol_bead_amount":"33,500,000","chip_protocol_antibody_amount":"5 micrograms","chip_antibody":"H3K4me1","chip_antibody_provider":"Abcam","chip_antibody_catalog":"ab8895","chip_antibody_lot":"727417"},"geolst":["GSM818040"]},{"type":"bigWig","name":"E007 H3K4me1 of H1 Derived Neuronal Progenitor Cultured Cells","url":"http://egg.wustl.edu/d/hg19/GSM818039.bigWig","public":true,"mode":1,"qtc":{"anglescale":1,"pr":238,"pg":236,"pb":51,"nr":255,"ng":0,"nb":0,"pth":"rgb(238,236,51)","nth":"#800000","thtype":2,"thmin":0,"thmax":10,"thpercentile":98,"height":5,"summeth":1,"smooth":7},"annotation":["11309","22010","30002"],"custom_annotation":["6","bigWig"],"details":{"sample_alias":"NPC-04","sample_common_name":"H1 Derived Neuronal Progenitor Cultured Cells","molecule":"genomic DNA","disease":"None","biomaterial_provider":"James Thomson Laboratory","biomaterial_type":"Cell Line","line":"H1","lineage":"Embryonic Stem Cell","differentiation_stage":"Embryonic stem cell differentiated into neural progenitor cells","differentiation_method":"Publication in progress","passage":"Between 20 and 30","medium":"Publication in progress","Sex":"Male","batch":"NPC-4","experiment_type":"Histone H3K4me1","extraction_protocol":"See ","extraction_protocol_type_of_sonicator":"Biorupter","extraction_protocol_sonication_cycles":"80","chip_protocol":"See ","chip_protocol_chromatin_amount":"500 micrograms","chip_protocol_bead_type":"magnetic anti-rabbit","chip_protocol_bead_amount":"33,500,000","chip_protocol_antibody_amount":"5 micrograms","chip_antibody":"H3K4me1","chip_antibody_provider":"Abcam","chip_antibody_catalog":"ab8895","chip_antibody_lot":"727417"},"geolst":["GSM818039"]},{"type":"bedGraph","name":"E007 ChIP-Seq Analysis of H3K4me1 in Neural Progenitor Cells","url":"http://egg.wustl.edu/d/hg19/GSM1013146_1.gz","public":true,"mode":1,"qtc":{"anglescale":1,"pr":238,"pg":236,"pb":51,"nr":255,"ng":0,"nb":0,"pth":"rgb(238,236,51)","nth":"#800000","thtype":2,"thmin":0,"thmax":10,"thpercentile":98,"height":5,"summeth":1,"smooth":7},"annotation":["11309","22010","30002","40301"],"custom_annotation":["6","bedGraph"],"details":{"sample alias":"NPC-07","sample common name":"H1 Derived Neuronal Progenitor Cultured Cells","molecule":"genomic DNA","disease":"None","biomaterial_provider":"James Thomson Laboratory","biomaterial_type":"Cell Line","line":"H1","lineage":"Embryonic Stem Cell","differentiation_stage":"Embryonic stem cell differentiated into neural progenitor cells","differentiation_method":"Publication in progress","passage":"30","medium":"Publication in progress","Sex":"Male","batch":"NPC-7","experiment_type":"Histone H3K4me1","extraction_protocol":"See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf","extraction_protocol_type_of_sonicator":"Biorupter","extraction_protocol_sonication_cycles":"80","chip_protocol":"See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf","chip_protocol_chromatin_amount":"500 micrograms","chip_protocol_bead_type":"magnetic anti-rabbit","chip_protocol_bead_amount":"33,500,000","chip_protocol_antibody_amount":"5 micrograms","chip_antibody":"H3K4me1","chip_antibody_provider":"Abcam","chip_antibody_catalog":"ab8895","chip_antibody_lot":"720417","original_filename":"GSM1013146_UCSD.H1_Derived_Neuronal_Progenitor_Cultured_Cells.H3K4me1.CY25.wig"},"geolst":["GSM1013146"]},{"type":"bigWig","name":"E013 H3K4me1 of human CD56  mesoderm cells","url":"http://egg.wustl.edu/d/hg19/GSM916070_1.bigWig","public":true,"mode":1,"qtc":{"anglescale":1,"pr":238,"pg":236,"pb":51,"nr":255,"ng":0,"nb":0,"pth":"rgb(238,236,51)","nth":"#800000","thtype":2,"thmin":0,"thmax":10,"thpercentile":98,"height":5,"summeth":1,"smooth":7},"annotation":["11323","22010","30003"],"custom_annotation":["6","bigWig"],"details":{"sample alias":"BioSam 575","sample common name":"hESC Derived CD56+ Mesoderm Cultured Cells","lineage":"mesoderm","medium":"Day 0-1: DMEM F12, 0.5% FBS, Activin A (100ng/mL) BMP4 (100ng/mL), VEGF (100ng/mL), and bFGF (20ng/mL). Days 1-5: DMEM F12, 0.5% FBS, BMP4 (100ng/mL), VEGF (100ng/mL), and bFGF (20ng/mL)","molecule":"genomic DNA","disease":"presumed normal","passage":"23","line":"CD56+ mesoderm","differentiation_method":"adherence","batch":"BioSAli 712","biomaterial_type":"Cell Line","differentiation_stage":"intermediate","Sex":"Male","biomaterial_provider":"Harvard","chip_protocol_bead_type":"Protein A-Sepharose 4B","chip_antibody":"H3K4me1","chip_protocol_chromatin_amount":"0.5 to 3 million cells","extraction_protocol":"cell/nuclei lysis","chip_protocol_antibody_amount":"~1 ug","chip_protocol_bead_amount":"10 ul bed volume","chip_protocol":"Bernstein_BROAD_ENCODE_protocol","extraction_protocol_sonication_cycles":"1","chip_antibody_catalog":"ab8895","chip_antibody_provider":"Abcam","chip_antibody_lot":"659352","experiment_type":"Histone H3K4me1","extraction_protocol_type_of_sonicator":"Branson","original_filename":"BI.hESC_Derived_CD56+_Mesoderm_Cultured_Cells.H3K4me1.DNA_Lib_1272.bigWig"},"geolst":["GSM916070"]},{"type":"bigWig","name":"E011 H3K4me1 of hESC Derived CD184  Endoderm Cultured Cells","url":"http://egg.wustl.edu/d/hg19/GSM772971_0.bigWig","public":true,"mode":1,"qtc":{"anglescale":1,"pr":238,"pg":236,"pb":51,"nr":255,"ng":0,"nb":0,"pth":"rgb(238,236,51)","nth":"#800000","thtype":2,"thmin":0,"thmax":10,"thpercentile":98,"height":5,"summeth":1,"smooth":7},"annotation":["11317","22010","30003"],"custom_annotation":["6","bigWig"],"details":{"sample_alias":"262","sample_common_name":"hESC Derived CD184+ Endoderm Cultured Cells","lineage":"NA","medium":"RPMI 100ng/mL Activin A 50ng/mL Wnt3a","molecule":"genomic DNA","disease":"presumed normal","passage":"1","line":"HUES64 derived CD184+","differentiation_method":"in vitro culture","batch":"BioSAli 136","biomaterial_type":"Cell Line","differentiation_stage":"differentiated","Sex":"Male","biomaterial_provider":"Harvard University","chip_protocol_bead_type":"Protein A-Sepharose 4B","chip_antibody":"H3K4me1","chip_protocol_chromatin_amount":"0.5 to 3 million cells","extraction_protocol":"cell/nuclei lysis","chip_protocol_antibody_amount":"~1 ug","chip_protocol_bead_amount":"10 ul bed volume","chip_protocol":"Bernstein_BROAD_ENCODE_protocol","extraction_protocol_sonication_cycles":"1","chip_antibody_catalog":"ab8895","chip_antibody_provider":"Abcam","chip_antibody_lot":"659352","experiment_type":"Histone H3K4me1","extraction_protocol_type_of_sonicator":"Branson","original_filename":"GSM772971_BI.hESC_Derived_CD184+_Endoderm_Cultured_Cells.H3K4me1.DNA_Lib_249"},"geolst":["GSM772971"]},{"type":"bigWig","name":"E004 H3K4me1 of H1 BMP4 Derived Mesendoderm Cultured Cells","url":"http://egg.wustl.edu/d/hg19/GSM752978_0.bigWig","public":true,"mode":1,"qtc":{"anglescale":1,"pr":238,"pg":236,"pb":51,"nr":255,"ng":0,"nb":0,"pth":"rgb(238,236,51)","nth":"#800000","thtype":2,"thmin":0,"thmax":10,"thpercentile":98,"height":5,"summeth":1,"smooth":7},"annotation":["11311","22010","30002"],"custom_annotation":["6","bigWig"],"details":{"sample_alias":"BMP4-04","sample_common_name":"H1 BMP4 Derived Mesendoderm Cultured Cells","molecule":"genomic DNA","disease":"None","biomaterial_provider":"James Thomson Laboratory","biomaterial_type":"Cell Line","line":"H1","lineage":"Embryonic Stem Cell","differentiation_stage":"Embryonic stem cell differentiated into mesendoderm by treatment with BMP4","differentiation_method":"H1 cells in E8 medium contatin 5ng/mL BMP4 and 25ng/mL Activin A for 2 days","passage":"Between 20 and 30","medium":"E8","Sex":"Male","batch":"BMP4-4","experiment_type":"Histone H3K4me1","extraction_protocol":"See","extraction_protocol_type_of_sonicator":"Biorupter","extraction_protocol_sonication_cycles":"80","chip_protocol":"See","chip_protocol_chromatin_amount":"500 micrograms","chip_protocol_bead_type":"magnetic anti-rabbit","chip_protocol_bead_amount":"33,500,000","chip_protocol_antibody_amount":"5 micrograms","chip_antibody":"H3K4me1","chip_antibody_provider":"Abcam","chip_antibody_catalog":"ab8895","chip_antibody_lot":"727417","original_filename":"GSM752978_UCSD.H1_BMP4_Derived_Mesendoderm_Cultured_Cells.H3K4me1.AK163.bigWig"},"geolst":["GSM752978"]},{"type":"bigWig","name":"E004 H3K4me1 of H1 BMP4 Derived Mesendoderm Cultured Cells","url":"http://egg.wustl.edu/d/hg19/GSM752977_0.bigWig","public":true,"mode":1,"qtc":{"anglescale":1,"pr":238,"pg":236,"pb":51,"nr":255,"ng":0,"nb":0,"pth":"rgb(238,236,51)","nth":"#800000","thtype":2,"thmin":0,"thmax":10,"thpercentile":98,"height":5,"summeth":1,"smooth":7},"annotation":["11311","22010","30002"],"custom_annotation":["6","bigWig"],"details":{"sample_alias":"BMP4-03","sample_common_name":"H1 BMP4 Derived Mesendoderm Cultured Cells","molecule":"genomic DNA","disease":"None","biomaterial_provider":"James Thomson Laboratory","biomaterial_type":"Cell Line","line":"H1","lineage":"Embryonic Stem Cell","differentiation_stage":"Embryonic stem cell differentiated into mesendoderm by treatment with BMP4","differentiation_method":"H1 cells in E8 medium contatin 5ng/mL BMP4 and 25ng/mL Activin A for 2 days","passage":"Between 20 and 30","medium":"E8","Sex":"Male","batch":"BMP4-3","experiment_type":"Histone H3K4me1","extraction_protocol":"See","extraction_protocol_type_of_sonicator":"Biorupter","extraction_protocol_sonication_cycles":"80","chip_protocol":"See","chip_protocol_chromatin_amount":"500 micrograms","chip_protocol_bead_type":"magnetic anti-rabbit","chip_protocol_bead_amount":"33,500,000","chip_protocol_antibody_amount":"5 micrograms","chip_antibody":"H3K4me1","chip_antibody_provider":"Abcam","chip_antibody_catalog":"ab8895","chip_antibody_lot":"727417","original_filename":"GSM752977_UCSD.H1_BMP4_Derived_Mesendoderm_Cultured_Cells.H3K4me1.AK133.bigWig"},"geolst":["GSM752977"]},{"type":"bigWig","name":"E005 H3K4me1 of H1 BMP4 Derived Trophoblast Cultured Cells","url":"http://egg.wustl.edu/d/hg19/GSM753436_0.bigWig","public":true,"mode":1,"qtc":{"anglescale":1,"pr":238,"pg":236,"pb":51,"nr":255,"ng":0,"nb":0,"pth":"rgb(238,236,51)","nth":"#800000","thtype":2,"thmin":0,"thmax":10,"thpercentile":98,"height":5,"summeth":1,"smooth":7},"annotation":["11312","22010","30002"],"custom_annotation":["6","bigWig"],"details":{"sample_alias":"BMP4-06","sample_common_name":"H1 BMP4 Derived Trophoblast Cultured Cells","molecule":"genomic DNA","disease":"None","biomaterial_provider":"James Thomson Laboratory","biomaterial_type":"Cell Line","line":"H1","lineage":"Embryonic Stem Cell","differentiation_stage":"Embryonic stem cell differentiated into trophoblast by treatment with BMP4","differentiation_method":"H1 cells were cultured in mTeSR1 medium without bFGF containing 50ng/mL BMP4 for 5 days","passage":"28","medium":"mTeSR1","Sex":"Male","batch":"BMP4-6","experiment_type":"Histone H3K4me1","extraction_protocol":"See","extraction_protocol_type_of_sonicator":"Biorupter","extraction_protocol_sonication_cycles":"80","chip_protocol":"See","chip_protocol_chromatin_amount":"500 micrograms","chip_protocol_bead_type":"magnetic anti-rabbit","chip_protocol_bead_amount":"33,500,000","chip_protocol_antibody_amount":"5 micrograms","chip_antibody":"H3K4me1","chip_antibody_provider":"Abcam","chip_antibody_catalog":"ab8895","chip_antibody_lot":"720417","original_filename":"GSM753436_UCSD.H1_BMP4_Derived_Trophoblast_Cultured_Cells.H3K4me1.LH5.bigWig"},"geolst":["GSM753436"]},{"type":"bigWig","name":"E005 H3K4me1 of H1 BMP4 Derived Trophoblast Cultured Cells","url":"http://egg.wustl.edu/d/hg19/GSM753435_0.bigWig","public":true,"mode":1,"qtc":{"anglescale":1,"pr":238,"pg":236,"pb":51,"nr":255,"ng":0,"nb":0,"pth":"rgb(238,236,51)","nth":"#800000","thtype":2,"thmin":0,"thmax":10,"thpercentile":98,"height":5,"summeth":1,"smooth":7},"annotation":["11312","22010","30002"],"custom_annotation":["6","bigWig"],"details":{"sample_alias":"BMP4-05","sample_common_name":"H1 BMP4 Derived Trophoblast Cultured Cells","molecule":"genomic DNA","disease":"None","biomaterial_provider":"James Thomson Laboratory","biomaterial_type":"Cell Line","line":"H1","lineage":"Embryonic Stem Cell","differentiation_stage":"Embryonic stem cell differentiated into trophoblast by treatment with BMP4","differentiation_method":"H1 cells were cultured in mTeSR1 medium without bFGF containing 50ng/mL BMP4 for 5 days","passage":"28","medium":"mTeSR1","Sex":"Male","batch":"BMP4-5","experiment_type":"Histone H3K4me1","extraction_protocol":"See","extraction_protocol_type_of_sonicator":"Biorupter","extraction_protocol_sonication_cycles":"80","chip_protocol":"See","chip_protocol_chromatin_amount":"500 micrograms","chip_protocol_bead_type":"magnetic anti-rabbit","chip_protocol_bead_amount":"33,500,000","chip_protocol_antibody_amount":"5 micrograms","chip_antibody":"H3K4me1","chip_antibody_provider":"Abcam","chip_antibody_catalog":"ab8895","chip_antibody_lot":"720417","original_filename":"GSM753435_UCSD.H1_BMP4_Derived_Trophoblast_Cultured_Cells.H3K4me1.LH1.bigWig"},"geolst":["GSM753435"]},{"type":"bigWig","name":"E005 H3K4me1 of BMP4 Trophoblast Cells","url":"http://egg.wustl.edu/d/hg19/GSM906403_1.bigWig","public":true,"mode":1,"qtc":{"anglescale":1,"pr":238,"pg":236,"pb":51,"nr":255,"ng":0,"nb":0,"pth":"rgb(238,236,51)","nth":"#800000","thtype":2,"thmin":0,"thmax":10,"thpercentile":98,"height":5,"summeth":1,"smooth":7},"annotation":["11312","22010","30002"],"custom_annotation":["6","bigWig"],"details":{"sample alias":"BMP4-09","sample common name":"H1 BMP4 Derived Trophoblast Cultured Cells","molecule":"genomic DNA","disease":"None","biomaterial_provider":"James Thomson Laboratory","biomaterial_type":"Cell Line","line":"H1","lineage":"Embryonic Stem Cell","differentiation_stage":"Embryonic stem cell differentiated into trophoblast by treatment with BMP4","differentiation_method":"H1 cells were cultured in mTeSR1 medium without bFGF containing 50ng/mL BMP4 for 5 days","passage":"31","medium":"mTeSR1","Sex":"Male","batch":"BMP4-9","experiment_type":"Histone H3K4me1","extraction_protocol":"See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf","extraction_protocol_type_of_sonicator":"Biorupter","extraction_protocol_sonication_cycles":"80","chip_protocol":"See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf","chip_protocol_chromatin_amount":"500 micrograms","chip_protocol_bead_type":"magnetic anti-rabbit","chip_protocol_bead_amount":"33,500,000","chip_protocol_antibody_amount":"5 micrograms","chip_antibody":"H3K4me1","chip_antibody_provider":"Abcam","chip_antibody_catalog":"ab8895","chip_antibody_lot":"720417","original_filename":"UCSD.H1_BMP4_Derived_Trophoblast_Cultured_Cells.H3K4me1.AY64.bigWig"},"geolst":["GSM906403"]},{"type":"bedGraph","name":"E005 ChIP-Seq Analysis of H3K4me1 in BMP4 Trophoblast Cells","url":"http://egg.wustl.edu/d/hg19/GSM956018_1.gz","public":true,"mode":1,"qtc":{"anglescale":1,"pr":238,"pg":236,"pb":51,"nr":255,"ng":0,"nb":0,"pth":"rgb(238,236,51)","nth":"#800000","thtype":2,"thmin":0,"thmax":10,"thpercentile":98,"height":5,"summeth":1,"smooth":7},"annotation":["11312","22010","30002","40302"],"custom_annotation":["6","bedGraph"],"details":{"sample alias":"BMP4-10","sample common name":"H1 BMP4 Derived Trophoblast Cultured Cells","molecule":"genomic DNA","disease":"None","biomaterial_provider":"James Thomson Laboratory","biomaterial_type":"Cell Line","line":"H1","lineage":"Embryonic Stem Cell","differentiation_stage":"Embryonic stem cell differentiated into trophoblast by treatment with BMP4","differentiation_method":"H1 cells were cultured in mTeSR1 medium without bFGF containing 50ng/mL BMP4 for 5 days","passage":"31","medium":"mTeSR1","Sex":"Male","batch":"BMP4-10","experiment_type":"Histone H3K4me1","extraction_protocol":"See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf","extraction_protocol_type_of_sonicator":"Biorupter","extraction_protocol_sonication_cycles":"80","chip_protocol":"See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf","chip_protocol_chromatin_amount":"500 micrograms","chip_protocol_bead_type":"magnetic anti-rabbit","chip_protocol_bead_amount":"33,500,000","chip_protocol_antibody_amount":"5 micrograms","chip_antibody":"H3K4me1","chip_antibody_provider":"Abcam","chip_antibody_catalog":"ab8895","chip_antibody_lot":"720417","original_filename":"GSM956018_UCSD.H1_BMP4_Derived_Trophoblast_Cultured_Cells.H3K4me1.AY258.wig"},"geolst":["GSM956018"]},{"type":"bigWig","name":"E006 H3K4me1 of H1 Derived Mesenchymal Stem Cells","url":"http://egg.wustl.edu/d/hg19/GSM767347_0.bigWig","public":true,"mode":1,"qtc":{"anglescale":1,"pr":238,"pg":236,"pb":51,"nr":255,"ng":0,"nb":0,"pth":"rgb(238,236,51)","nth":"#800000","thtype":2,"thmin":0,"thmax":10,"thpercentile":98,"height":5,"summeth":1,"smooth":7},"annotation":["11313","22010","30002"],"custom_annotation":["6","bigWig"],"details":{"sample_alias":"MSC-02","sample_common_name":"H1 Derived Mesenchymal Stem Cells","molecule":"genomic DNA","disease":"None","biomaterial_provider":"James Thomson Laboratory","biomaterial_type":"Cell Line","line":"H1","lineage":"Embryonic Stem Cell","differentiation_stage":"Embryonic stem cell differentiated into mesenchymal stem cells","differentiation_method":"Publication in progress","passage":"6","medium":"Publication in progress","Sex":"Male","batch":"MSC-2","experiment_type":"Histone H3K4me1","extraction_protocol":"See","extraction_protocol_type_of_sonicator":"Biorupter","extraction_protocol_sonication_cycles":"80","chip_protocol":"See","chip_protocol_chromatin_amount":"500 micrograms","chip_protocol_bead_type":"magnetic anti-rabbit","chip_protocol_bead_amount":"33,500,000","chip_protocol_antibody_amount":"5 micrograms","chip_antibody":"H3K4me1","chip_antibody_provider":"Abcam","chip_antibody_catalog":"ab8895","chip_antibody_lot":"720417","original_filename":"GSM767347_UCSD.H1_Derived_Mesenchymal_Stem_Cells.H3K4me1.SK465.bigWig"},"geolst":["GSM767347"]},{"type":"bigWig","name":"E006 H3K4me1 of H1 Derived Mesenchymal Stem Cells","url":"http://egg.wustl.edu/d/hg19/GSM753437_0.bigWig","public":true,"mode":1,"qtc":{"anglescale":1,"pr":238,"pg":236,"pb":51,"nr":255,"ng":0,"nb":0,"pth":"rgb(238,236,51)","nth":"#800000","thtype":2,"thmin":0,"thmax":10,"thpercentile":98,"height":5,"summeth":1,"smooth":7},"annotation":["11313","22010","30002"],"custom_annotation":["6","bigWig"],"details":{"sample_alias":"MSC-01","sample_common_name":"H1 Derived Mesenchymal Stem Cells","molecule":"genomic DNA","disease":"None","biomaterial_provider":"James Thomson Laboratory","biomaterial_type":"Cell Line","line":"H1","lineage":"Embryonic Stem Cell","differentiation_stage":"Embryonic stem cell differentiated into mesenchymal stem cells","differentiation_method":"Publication in progress","passage":"6","medium":"Publication in progress","Sex":"Male","batch":"MSC-1","experiment_type":"Histone H3K4me1","extraction_protocol":"See","extraction_protocol_type_of_sonicator":"Biorupter","extraction_protocol_sonication_cycles":"80","chip_protocol":"See","chip_protocol_chromatin_amount":"500 micrograms","chip_protocol_bead_type":"magnetic anti-rabbit","chip_protocol_bead_amount":"33,500,000","chip_protocol_antibody_amount":"5 micrograms","chip_antibody":"H3K4me1","chip_antibody_provider":"Abcam","chip_antibody_catalog":"ab8895","chip_antibody_lot":"720417","original_filename":"GSM753437_UCSD.H1_Derived_Mesenchymal_Stem_Cells.H3K4me1.SK461.bigWig"},"geolst":["GSM753437"]},{"type":"bigWig","name":"E062 H3K4me1 of peripheral blood mononuclear primary cells","url":"http://egg.wustl.edu/d/hg19/GSM613884.bigWig","public":true,"mode":1,"qtc":{"anglescale":1,"pr":238,"pg":236,"pb":51,"nr":255,"ng":0,"nb":0,"pth":"rgb(238,236,51)","nth":"#800000","thtype":2,"thmin":0,"thmax":10,"thpercentile":98,"height":5,"summeth":1,"smooth":7},"annotation":["13018","22010","30014","40040","60001","70008"],"custom_annotation":["19","bigWig"],"details":{"molecule":"genomic DNA"," disease":"None","biomaterial_provider":"Weiss Lab UCSF","biomaterial_type":"Primary Cell","cell_type":"Peripheral Blood Mononuclear Cell","markers":"None","donor_id":"TC012","donor_age":"27","donor_health_status":"Disease Free","donor_sex":"Male","donor_ethnicity":"Indian/Arabian","passage_if_expanded":"NA","karyotype":"46, XY","parity":"NA","blood_type":"NA","experiment_type":"Histone H3K4me1","extraction_protocol":"Farnham Lab Protocol","extraction_protocol_type_of_sonicator":"Bioruptor","extraction_protocol_sonication_cycles":"30min","chip_protocol":"Farnham Lab Protocol","chip_protocol_chromatin_amount":"3ug","chip_protocol_bead_type":"Protein G Mag Beads","chip_protocol_bead_amount":"15ul","chip_protocol_antibody_amount":"2ug","size_fraction":"81-331bp","chip_antibody":"H3K4me1","chip_antibody_provider":"Diagenode","chip_antibody_catalog":"pAb-037-050","chip_antibody_lot":"A399-0011","original_filename":"GSM613884_UCSF-UBC.Peripheral_Blood_Mononuclear_Primary_Cells.H3K4me1.TC012.HS2745.bigWig","Embargo end date":"2011-08-11"},"geolst":["GSM613884"]},{"type":"bigWig","name":"E034 H3K4me1 of CD3 primary cells","url":"http://egg.wustl.edu/d/hg19/GSM537636.bigWig","public":true,"mode":1,"qtc":{"anglescale":1,"pr":238,"pg":236,"pb":51,"nr":255,"ng":0,"nb":0,"pth":"rgb(238,236,51)","nth":"#800000","thtype":2,"thmin":0,"thmax":10,"thpercentile":98,"height":5,"summeth":1,"smooth":7},"annotation":["13022","22010","30003","40018","60003","70009"],"custom_annotation":["19","bigWig"],"details":{"molecule":"genomic DNA"," disease":"none","biomaterial_provider":"FHCRC","biomaterial_type":"Primary Cell","cell_type":"CD3 Primary Cells","markers":"CD3+","donor_id":"CD3_39811","donor_age":"NA","donor_health_status":"none","donor_sex":"Unknown","donor_ethnicity":"NA","passage_if_expanded":"NA","experiment_type":"Histone H3K4me1","extraction_protocol":"SDS lysis","extraction_protocol_type_of_sonicator":"Bioruptor","extraction_protocol_sonication_cycles":"1","chip_protocol":"Bernstein_BROAD_ENCODE_protocol","chip_protocol_chromatin_amount":"10 million cells","chip_protocol_bead_type":"Protein A-Sepharose 4B","chip_protocol_bead_amount":"70 ul bed volume","chip_protocol_antibody_amount":"2 - 15 ug","chip_antibody":"H3K4Me1","chip_antibody_provider":"Abcam","chip_antibody_catalog":"ab8895","chip_antibody_lot":"151302","original_filename":"GSM537636_BI.CD3_Primary_Cells.H3K4me1.CD3_39811.bigWig","Embargo end date":"2011-01-28"},"geolst":["GSM537636"]},{"type":"bigWig","name":"E034 H3K4me1 of CD3 primary cells","url":"http://egg.wustl.edu/d/hg19/GSM537646.bigWig","public":true,"mode":1,"qtc":{"anglescale":1,"pr":238,"pg":236,"pb":51,"nr":255,"ng":0,"nb":0,"pth":"rgb(238,236,51)","nth":"#800000","thtype":2,"thmin":0,"thmax":10,"thpercentile":98,"height":5,"summeth":1,"smooth":7},"annotation":["13022","22010","30003","40019","60003","70009"],"custom_annotation":["19","bigWig"],"details":{"molecule":"genomic DNA"," disease":"none","biomaterial_provider":"FHCRC","biomaterial_type":"Primary Cell","cell_type":"CD3 Primary Cells","markers":"CD3+","donor_id":"CD3_39840","donor_age":"NA","donor_health_status":"none","donor_sex":"Unknown","donor_ethnicity":"NA","passage_if_expanded":"NA","experiment_type":"Histone H3K4me1","extraction_protocol":"SDS lysis","extraction_protocol_type_of_sonicator":"Bioruptor","extraction_protocol_sonication_cycles":"1","chip_protocol":"Bernstein_BROAD_ENCODE_protocol","chip_protocol_chromatin_amount":"10 million cells","chip_protocol_bead_type":"Protein A-Sepharose 4B","chip_protocol_bead_amount":"70 ul bed volume","chip_protocol_antibody_amount":"2 - 15 ug","chip_antibody":"H3K4Me1","chip_antibody_provider":"Abcam","chip_antibody_catalog":"ab8895","chip_antibody_lot":"383111","original_filename":"GSM537646_BI.CD3_Primary_Cells.H3K4me1.CD3_39840.bigWig","Embargo end date":"2011-01-28"},"geolst":["GSM537646"]},{"type":"bigWig","name":"E045 H3K4me1 of CD4 _CD25int_CD127 _Tmem_Primary_Cells","url":"http://egg.wustl.edu/d/hg19/GSM916024.bigWig","public":true,"mode":1,"qtc":{"anglescale":1,"pr":238,"pg":236,"pb":51,"nr":255,"ng":0,"nb":0,"pth":"rgb(238,236,51)","nth":"#800000","thtype":2,"thmin":0,"thmax":10,"thpercentile":98,"height":5,"summeth":1,"smooth":7},"annotation":["13152","22010","30003","40125","60003","70009"],"custom_annotation":["17","bigWig"],"details":{"sample_alias":"BioSam 131","sample_common_name":"CD4+ CD25int CD127+ Tmem Primary Cells","donor_health_status":"presumed normal","molecule":"genomic DNA","disease":"presumed normal","markers":"CD4+ T cell","passage_if_expanded":"NA","cell_type":"CD25int CD127+ Tmem","donor_ethnicity":"NA","donor_sex":"Unknown","biomaterial_type":"Primary Cell","donor_id":"Donor 62","biomaterial_provider":"Dana Farber","donor_age":"NA","chip_protocol_bead_type":"Protein A-Sepharose 4B","chip_antibody":"H3K4me1","chip_protocol_chromatin_amount":"0.5 to 3 million cells","extraction_protocol":"cell/nuclei lysis","chip_protocol_antibody_amount":"~1 ug","chip_protocol_bead_amount":"10 ul bed volume","chip_protocol":"Bernstein_BROAD_ENCODE_protocol","extraction_protocol_sonication_cycles":"1","chip_antibody_catalog":"ab8895","chip_antibody_provider":"Abcam","chip_antibody_lot":"659352","experiment_type":"Histone H3K4me1","extraction_protocol_type_of_sonicator":"Branson"},"geolst":["GSM916024"]},{"type":"bigWig","name":"E044 H3K4me1 of CD4 _CD25 _CD127-_Treg_Primary_Cells","url":"http://egg.wustl.edu/d/hg19/GSM772973_0.bigWig","public":true,"mode":1,"qtc":{"anglescale":1,"pr":238,"pg":236,"pb":51,"nr":255,"ng":0,"nb":0,"pth":"rgb(238,236,51)","nth":"#800000","thtype":2,"thmin":0,"thmax":10,"thpercentile":98,"height":5,"summeth":1,"smooth":7},"annotation":["13154","22010","30003","40125","60003","70009"],"custom_annotation":["17","bigWig"],"details":{"sample_alias":"BioSam 129","sample_common_name":"CD4+ CD25+ CD127- Treg Primary Cells","donor_health_status":"presumed normal","molecule":"genomic DNA","disease":"presumed normal","markers":"CD4+ T cell","passage_if_expanded":"NA","cell_type":"CD25+ CD127- Treg","donor_ethnicity":"NA","donor_sex":"Unknown","biomaterial_type":"Primary Cell","donor_id":"Donor 62","biomaterial_provider":"Dana Farber","donor_age":"NA","chip_protocol_bead_type":"Protein A-Sepharose 4B","chip_antibody":"H3K4me1","chip_protocol_chromatin_amount":"0.5 to 3 million cells","extraction_protocol":"cell/nuclei lysis","chip_protocol_antibody_amount":"~1 ug","chip_protocol_bead_amount":"10 ul bed volume","chip_protocol":"Bernstein_BROAD_ENCODE_protocol","extraction_protocol_sonication_cycles":"1","chip_antibody_catalog":"ab8895","chip_antibody_provider":"Abcam","chip_antibody_lot":"151302","experiment_type":"Histone H3K4me1","extraction_protocol_type_of_sonicator":"Branson","original_filename":"GSM772973_BI.CD4+_CD25+_CD127-_Treg_Primary_Cells.H3K4me1.Donor_62"},"geolst":["GSM772973"]},{"type":"bigWig","name":"E043 H3K4me1 of CD4 _CD25-_Th_Primary_Cells","url":"http://egg.wustl.edu/d/hg19/GSM772849_0.bigWig","public":true,"mode":1,"qtc":{"anglescale":1,"pr":238,"pg":236,"pb":51,"nr":255,"ng":0,"nb":0,"pth":"rgb(238,236,51)","nth":"#800000","thtype":2,"thmin":0,"thmax":10,"thpercentile":98,"height":5,"summeth":1,"smooth":7},"annotation":["13157","22010","30003","40125","60003","70009"],"custom_annotation":["17","bigWig"],"details":{"sample_alias":"BioSam 130","sample_common_name":"CD4+ CD25- Th Primary Cells","donor_health_status":"presumed normal","molecule":"genomic DNA","disease":"presumed normal","markers":"CD4+ T cell","passage_if_expanded":"NA","cell_type":"CD25- Th","donor_ethnicity":"NA","donor_sex":"Unknown","biomaterial_type":"Primary Cell","donor_id":"Donor 62","biomaterial_provider":"Dana Farber","donor_age":"NA","chip_protocol_bead_type":"Protein A-Sepharose 4B","chip_antibody":"H3K4me1","chip_protocol_chromatin_amount":"0.5 to 3 million cells","extraction_protocol":"cell/nuclei lysis","chip_protocol_antibody_amount":"~1 ug","chip_protocol_bead_amount":"10 ul bed volume","chip_protocol":"Bernstein_BROAD_ENCODE_protocol","extraction_protocol_sonication_cycles":"1","chip_antibody_catalog":"ab8895","chip_antibody_provider":"Abcam","chip_antibody_lot":"151302","experiment_type":"Histone H3K4me1","extraction_protocol_type_of_sonicator":"Branson","original_filename":"GSM772849_BI.CD4+_CD25-_Th_Primary_Cells.H3K4me1.Donor_62"},"geolst":["GSM772849"]},{"type":"bigWig","name":"E039 H3K4me1 of CD4 _CD25-_CD45RA _Naive_Primary_Cells","url":"http://egg.wustl.edu/d/hg19/GSM772851.bigWig","public":true,"mode":1,"qtc":{"anglescale":1,"pr":238,"pg":236,"pb":51,"nr":255,"ng":0,"nb":0,"pth":"rgb(238,236,51)","nth":"#800000","thtype":2,"thmin":0,"thmax":10,"thpercentile":98,"height":5,"summeth":1,"smooth":7},"annotation":["13149","22010","30003","40125","60003","70009"],"custom_annotation":["17","bigWig"],"details":{"sample_alias":"BioSam 133","sample_common_name":"CD4+ CD25- CD45RA+ Naive Primary Cells","donor_health_status":"presumed normal","molecule":"genomic DNA","disease":"presumed normal","markers":"CD4+ T cell","passage_if_expanded":"NA","cell_type":"CD25- CD45RA+ naive","donor_ethnicity":"NA","donor_sex":"Unknown","biomaterial_type":"Primary Cell","donor_id":"Donor 62","biomaterial_provider":"Dana Farber","donor_age":"NA","chip_protocol_bead_type":"Protein A-Sepharose 4B","chip_antibody":"H3K4me1","chip_protocol_chromatin_amount":"0.5 to 3 million cells","extraction_protocol":"cell/nuclei lysis","chip_protocol_antibody_amount":"~1 ug","chip_protocol_bead_amount":"10 ul bed volume","chip_protocol":"Bernstein_BROAD_ENCODE_protocol","extraction_protocol_sonication_cycles":"1","chip_antibody_catalog":"ab8895","chip_antibody_provider":"Abcam","chip_antibody_lot":"659352","experiment_type":"Histone H3K4me1","extraction_protocol_type_of_sonicator":"Branson"},"geolst":["GSM772851"]},{"type":"bigWig","name":"E042 H3K4me1 of CD4 _CD25-_IL17 _PMA-Ionomcyin_stimulated_Th17_Primary_Cells","url":"http://egg.wustl.edu/d/hg19/GSM772985_0.bigWig","public":true,"mode":1,"qtc":{"anglescale":1,"pr":238,"pg":236,"pb":51,"nr":255,"ng":0,"nb":0,"pth":"rgb(238,236,51)","nth":"#800000","thtype":2,"thmin":0,"thmax":10,"thpercentile":98,"height":5,"summeth":1,"smooth":7},"annotation":["13151","22010","30003","40125","60003","70009"],"custom_annotation":["17","bigWig"],"details":{"sample_alias":"BioSam 134","sample_common_name":"CD4+ CD25- IL17+ PMA-Ionomcyin stimulated Th17 Primary Cells","donor_health_status":"presumed normal","molecule":"genomic DNA","disease":"presumed normal","markers":"CD4+ T cell","passage_if_expanded":"NA","cell_type":"CD25- IL17+ Th17 stim","donor_ethnicity":"NA","donor_sex":"Unknown","biomaterial_type":"Primary Cell","donor_id":"Donor 62","biomaterial_provider":"Dana Farber","donor_age":"NA","chip_protocol_bead_type":"Protein A-Sepharose 4B","chip_antibody":"H3K4me1","chip_protocol_chromatin_amount":"0.5 to 3 million cells","extraction_protocol":"cell/nuclei lysis","chip_protocol_antibody_amount":"~1 ug","chip_protocol_bead_amount":"10 ul bed volume","chip_protocol":"Bernstein_BROAD_ENCODE_protocol","extraction_protocol_sonication_cycles":"1","chip_antibody_catalog":"ab8895","chip_antibody_provider":"Abcam","chip_antibody_lot":"659352","experiment_type":"Histone H3K4me1","extraction_protocol_type_of_sonicator":"Branson","original_filename":"GSM772985_BI.CD4+_CD25-_IL17+_PMA-Ionomcyin_stimulated_Th17_Primary_Cells.H3K4me1.Donor_62"},"geolst":["GSM772985"]},{"type":"bigWig","name":"E040 H3K4me1 of CD4 _CD25-_CD45RO _Memory_Primary_Cells","url":"http://egg.wustl.edu/d/hg19/GSM772928_0.bigWig","public":true,"mode":1,"qtc":{"anglescale":1,"pr":238,"pg":236,"pb":51,"nr":255,"ng":0,"nb":0,"pth":"rgb(238,236,51)","nth":"#800000","thtype":2,"thmin":0,"thmax":10,"thpercentile":98,"height":5,"summeth":1,"smooth":7},"annotation":["13150","22010","30003","40125","60003","70009"],"custom_annotation":["17","bigWig"],"details":{"sample_alias":"BioSam 132","sample_common_name":"CD4+ CD25- CD45RO+ Memory Primary Cells","donor_health_status":"presumed normal","molecule":"genomic DNA","disease":"presumed normal","markers":"CD4+ T cell","passage_if_expanded":"NA","cell_type":"CD25- CD45RO+ mem","donor_ethnicity":"NA","donor_sex":"Unknown","biomaterial_type":"Primary Cell","donor_id":"Donor 62","biomaterial_provider":"Dana Farber","donor_age":"NA","chip_protocol_bead_type":"Protein A-Sepharose 4B","chip_antibody":"H3K4me1","chip_protocol_chromatin_amount":"0.5 to 3 million cells","extraction_protocol":"cell/nuclei lysis","chip_protocol_antibody_amount":"~1 ug","chip_protocol_bead_amount":"10 ul bed volume","chip_protocol":"Bernstein_BROAD_ENCODE_protocol","extraction_protocol_sonication_cycles":"1","chip_antibody_catalog":"ab8895","chip_antibody_provider":"Abcam","chip_antibody_lot":"659352","experiment_type":"Histone H3K4me1","extraction_protocol_type_of_sonicator":"Branson","original_filename":"GSM772928_BI.CD4+_CD25-_CD45RO+_Memory_Primary_Cells.H3K4me1.Donor_62"},"geolst":["GSM772928"]},{"type":"bigWig","name":"E037 H3K4me1 of CD4 memory primary cells","url":"http://egg.wustl.edu/d/hg19/GSM772924_0.bigWig","public":true,"mode":1,"qtc":{"anglescale":1,"pr":238,"pg":236,"pb":51,"nr":255,"ng":0,"nb":0,"pth":"rgb(238,236,51)","nth":"#800000","thtype":2,"thmin":0,"thmax":10,"thpercentile":98,"height":5,"summeth":1,"smooth":7},"annotation":["13020","22010","30003","40160","60003","70009"],"custom_annotation":["17","bigWig"],"details":{"sample_alias":"BioSam 185","sample_common_name":"CD4 Memory Primary Cells","donor_health_status":"presumed normal","molecule":"genomic DNA","disease":"presumed normal","markers":"CD4+","passage_if_expanded":"NA","cell_type":"CD45RO CD4","donor_ethnicity":"NA","donor_sex":"Unknown","biomaterial_type":"Primary Cell","donor_id":"Donor 101 8 pooled leukopaks Jan 20 2011","biomaterial_provider":"Dana Farber","donor_age":"NA","chip_protocol_bead_type":"Protein A-Sepharose 4B","chip_antibody":"H3K4me1","chip_protocol_chromatin_amount":"0.5 to 3 million cells","extraction_protocol":"cell/nuclei lysis","chip_protocol_antibody_amount":"~1 ug","chip_protocol_bead_amount":"10 ul bed volume","chip_protocol":"Bernstein_BROAD_ENCODE_protocol","extraction_protocol_sonication_cycles":"1","chip_antibody_catalog":"ab8895","chip_antibody_provider":"Abcam","chip_antibody_lot":"659352","experiment_type":"Histone H3K4me1","extraction_protocol_type_of_sonicator":"Branson","original_filename":"GSM772924_BI.CD4_Memory_Primary_Cells.H3K4me1.Donor_101_8_pooled_leukopaks_Jan_20_2011"},"geolst":["GSM772924"]},{"type":"bigWig","name":"E037 H3K4me1 of CD4 memory primary cells","url":"http://egg.wustl.edu/d/hg19/GSM772884_0.bigWig","public":true,"mode":1,"qtc":{"anglescale":1,"pr":238,"pg":236,"pb":51,"nr":255,"ng":0,"nb":0,"pth":"rgb(238,236,51)","nth":"#800000","thtype":2,"thmin":0,"thmax":10,"thpercentile":98,"height":5,"summeth":1,"smooth":7},"annotation":["13020","22010","30003","40174","60003","70009"],"custom_annotation":["17","bigWig"],"details":{"sample_alias":"BioSam 181","sample_common_name":"CD4 Memory Primary Cells","donor_health_status":"presumed normal","molecule":"genomic DNA","disease":"presumed normal","markers":"CD4+","passage_if_expanded":"NA","cell_type":"CD45RO CD4","donor_ethnicity":"NA","donor_sex":"Unknown","biomaterial_type":"Primary Cell","donor_id":"Donor 100 7 pooled leukopaks Jan 7 2011","biomaterial_provider":"Dana Farber","donor_age":"NA","chip_protocol_bead_type":"Protein A-Sepharose 4B","chip_antibody":"H3K4me1","chip_protocol_chromatin_amount":"0.5 to 3 million cells","extraction_protocol":"cell/nuclei lysis","chip_protocol_antibody_amount":"~1 ug","chip_protocol_bead_amount":"10 ul bed volume","chip_protocol":"Bernstein_BROAD_ENCODE_protocol","extraction_protocol_sonication_cycles":"1","chip_antibody_catalog":"ab8895","chip_antibody_provider":"Abcam","chip_antibody_lot":"659352","experiment_type":"Histone H3K4me1","extraction_protocol_type_of_sonicator":"Branson","original_filename":"GSM772884_BI.CD4_Memory_Primary_Cells.H3K4me1.Donor_100_7_pooled_leukopaks_Jan_7_2011"},"geolst":["GSM772884"]},{"type":"bigWig","name":"E048 H3K4me1 of CD8_Memory_Primary_Cells","url":"http://egg.wustl.edu/d/hg19/GSM772873_0.bigWig","public":true,"mode":1,"qtc":{"anglescale":1,"pr":238,"pg":236,"pb":51,"nr":255,"ng":0,"nb":0,"pth":"rgb(238,236,51)","nth":"#800000","thtype":2,"thmin":0,"thmax":10,"thpercentile":98,"height":5,"summeth":1,"smooth":7},"annotation":["13153","22010","30003","40174","60003","70009"],"custom_annotation":["17","bigWig"],"details":{"sample_alias":"BioSam 182","sample_common_name":"CD8 Memory Primary Cells","donor_health_status":"presumed normal","molecule":"genomic DNA","disease":"presumed normal","markers":"CD8+","passage_if_expanded":"NA","cell_type":"CD45RO CD8","donor_ethnicity":"NA","donor_sex":"Unknown","biomaterial_type":"Primary Cell","donor_id":"Donor 100 7 pooled leukopaks Jan 7 2011","biomaterial_provider":"Dana Farber","donor_age":"NA","chip_protocol_bead_type":"Protein A-Sepharose 4B","chip_antibody":"H3K4me1","chip_protocol_chromatin_amount":"0.5 to 3 million cells","extraction_protocol":"cell/nuclei lysis","chip_protocol_antibody_amount":"~1 ug","chip_protocol_bead_amount":"10 ul bed volume","chip_protocol":"Bernstein_BROAD_ENCODE_protocol","extraction_protocol_sonication_cycles":"1","chip_antibody_catalog":"ab8895","chip_antibody_provider":"Abcam","chip_antibody_lot":"659352","experiment_type":"Histone H3K4me1","extraction_protocol_type_of_sonicator":"Branson","original_filename":"GSM772873_BI.CD8_Memory_Primary_Cells.H3K4me1.Donor_100_7_pooled_leukopaks_Jan_7_2011"},"geolst":["GSM772873"]},{"type":"bigWig","name":"E048 H3K4me1 of CD8_Memory_Primary_Cells","url":"http://egg.wustl.edu/d/hg19/GSM772933_0.bigWig","public":true,"mode":1,"qtc":{"anglescale":1,"pr":238,"pg":236,"pb":51,"nr":255,"ng":0,"nb":0,"pth":"rgb(238,236,51)","nth":"#800000","thtype":2,"thmin":0,"thmax":10,"thpercentile":98,"height":5,"summeth":1,"smooth":7},"annotation":["13153","22010","30003","40160","60003","70009"],"custom_annotation":["17","bigWig"],"details":{"sample_alias":"BioSam 186","sample_common_name":"CD8 Memory Primary Cells","donor_health_status":"presumed normal","molecule":"genomic DNA","disease":"presumed normal","markers":"CD8+","passage_if_expanded":"NA","cell_type":"CD45RO CD8","donor_ethnicity":"NA","donor_sex":"Unknown","biomaterial_type":"Primary Cell","donor_id":"Donor 101 8 pooled leukopaks Jan 20 2011","biomaterial_provider":"Dana Farber","donor_age":"NA","chip_protocol_bead_type":"Protein A-Sepharose 4B","chip_antibody":"H3K4me1","chip_protocol_chromatin_amount":"0.5 to 3 million cells","extraction_protocol":"cell/nuclei lysis","chip_protocol_antibody_amount":"~1 ug","chip_protocol_bead_amount":"10 ul bed volume","chip_protocol":"Bernstein_BROAD_ENCODE_protocol","extraction_protocol_sonication_cycles":"1","chip_antibody_catalog":"ab8895","chip_antibody_provider":"Abcam","chip_antibody_lot":"659352","experiment_type":"Histone H3K4me1","extraction_protocol_type_of_sonicator":"Branson","original_filename":"GSM772933_BI.CD8_Memory_Primary_Cells.H3K4me1.Donor_101_8_pooled_leukopaks_Jan_20_2011"},"geolst":["GSM772933"]},{"type":"bigWig","name":"E038 H3K4me1 of CD4 naive primary cells","url":"http://egg.wustl.edu/d/hg19/GSM772860_0.bigWig","public":true,"mode":1,"qtc":{"anglescale":1,"pr":238,"pg":236,"pb":51,"nr":255,"ng":0,"nb":0,"pth":"rgb(238,236,51)","nth":"#800000","thtype":2,"thmin":0,"thmax":10,"thpercentile":98,"height":5,"summeth":1,"smooth":7},"annotation":["13025","22010","30003","40160","60003","70009"],"custom_annotation":["17","bigWig"],"details":{"sample_alias":"BioSam 187","sample_common_name":"CD4 Naive Primary Cells","donor_health_status":"presumed normal","molecule":"genomic DNA","disease":"presumed normal","markers":"CD4+","passage_if_expanded":"NA","cell_type":"CD45RA CD4","donor_ethnicity":"NA","donor_sex":"Unknown","biomaterial_type":"Primary Cell","donor_id":"Donor 101 8 pooled leukopaks Jan 20 2011","biomaterial_provider":"Dana Farber","donor_age":"NA","chip_protocol_bead_type":"Protein A-Sepharose 4B","chip_antibody":"H3K4me1","chip_protocol_chromatin_amount":"0.5 to 3 million cells","extraction_protocol":"cell/nuclei lysis","chip_protocol_antibody_amount":"~1 ug","chip_protocol_bead_amount":"10 ul bed volume","chip_protocol":"Bernstein_BROAD_ENCODE_protocol","extraction_protocol_sonication_cycles":"1","chip_antibody_catalog":"ab8895","chip_antibody_provider":"Abcam","chip_antibody_lot":"659352","experiment_type":"Histone H3K4me1","extraction_protocol_type_of_sonicator":"Branson","original_filename":"GSM772860_BI.CD4_Naive_Primary_Cells.H3K4me1.Donor_101_8_pooled_leukopaks_Jan_20_2011"},"geolst":["GSM772860"]},{"type":"bigWig","name":"E038 H3K4me1 of CD4 naive primary cells","url":"http://egg.wustl.edu/d/hg19/GSM772869_0.bigWig","public":true,"mode":1,"qtc":{"anglescale":1,"pr":238,"pg":236,"pb":51,"nr":255,"ng":0,"nb":0,"pth":"rgb(238,236,51)","nth":"#800000","thtype":2,"thmin":0,"thmax":10,"thpercentile":98,"height":5,"summeth":1,"smooth":7},"annotation":["13025","22010","30003","40174","60003","70009"],"custom_annotation":["17","bigWig"],"details":{"sample_alias":"BioSam 183","sample_common_name":"CD4 Naive Primary Cells","donor_health_status":"presumed normal","molecule":"genomic DNA","disease":"presumed normal","markers":"CD4+","passage_if_expanded":"NA","cell_type":"CD45RA CD4","donor_ethnicity":"NA","donor_sex":"Unknown","biomaterial_type":"Primary Cell","donor_id":"Donor 100 7 pooled leukopaks Jan 7 2011","biomaterial_provider":"Dana Farber","donor_age":"NA","chip_protocol_bead_type":"Protein A-Sepharose 4B","chip_antibody":"H3K4me1","chip_protocol_chromatin_amount":"0.5 to 3 million cells","extraction_protocol":"cell/nuclei lysis","chip_protocol_antibody_amount":"~1 ug","chip_protocol_bead_amount":"10 ul bed volume","chip_protocol":"Bernstein_BROAD_ENCODE_protocol","extraction_protocol_sonication_cycles":"1","chip_antibody_catalog":"ab8895","chip_antibody_provider":"Abcam","chip_antibody_lot":"659352","experiment_type":"Histone H3K4me1","extraction_protocol_type_of_sonicator":"Branson","original_filename":"GSM772869_BI.CD4_Naive_Primary_Cells.H3K4me1.Donor_100_7_pooled_leukopaks_Jan_7_2011"},"geolst":["GSM772869"]},{"type":"bigWig","name":"E047 H3K4me1 of CD8 naive primary cells","url":"http://egg.wustl.edu/d/hg19/GSM613814.bigWig","public":true,"mode":1,"qtc":{"anglescale":1,"pr":238,"pg":236,"pb":51,"nr":255,"ng":0,"nb":0,"pth":"rgb(238,236,51)","nth":"#800000","thtype":2,"thmin":0,"thmax":10,"thpercentile":98,"height":5,"summeth":1,"smooth":7},"annotation":["13021","22010","30014","40028","60001","70004"],"custom_annotation":["17","bigWig"],"details":{"molecule":"genomic DNA"," disease":"None","biomaterial_provider":"Weiss Lab UCSF","biomaterial_type":"Primary Cell","cell_type":"CD8 Naive Primary Cell","markers":"CD8+,CD45RA+","donor_id":"TC001","donor_age":"21 years","donor_health_status":"Disease Free","donor_sex":"Male","donor_ethnicity":"Caucasian","passage_if_expanded":"n/a","parity":"NA","karyotype":"46, XY","experiment_type":"Histone H3K4me1","extraction_protocol":"Farnham Lab Protocol","extraction_protocol_type_of_sonicator":"Bioruptor","extraction_protocol_sonication_cycles":"20 min","chip_protocol":"Farnham Lab Protocol","chip_protocol_chromatin_amount":"1 ug","chip_protocol_bead_type":"Protein G Mag Beads","chip_protocol_bead_amount":"15 ul","chip_protocol_antibody_amount":"2 ug","size_fraction":"400-600bp","chip_antibody":"H3K4me1","chip_antibody_provider":"Diagenode","chip_antibody_catalog":"pAb-037-050","chip_antibody_lot":"A399-0011","original_filename":"GSM613814_UCSF-UBC.CD8_Naive_Primary_Cells.H3K4me1.TC001.bigWig","Embargo end date":"2011-08-11"},"geolst":["GSM613814"]},{"type":"bigWig","name":"E047 H3K4me1 of CD8 naive primary cells","url":"http://egg.wustl.edu/d/hg19/GSM773032_0.bigWig","public":true,"mode":1,"qtc":{"anglescale":1,"pr":238,"pg":236,"pb":51,"nr":255,"ng":0,"nb":0,"pth":"rgb(238,236,51)","nth":"#800000","thtype":2,"thmin":0,"thmax":10,"thpercentile":98,"height":5,"summeth":1,"smooth":7},"annotation":["13021","22010","30003","40160","60003","70009"],"custom_annotation":["17","bigWig"],"details":{"sample_alias":"BioSam 188","sample_common_name":"CD8 Naive Primary Cells","donor_health_status":"presumed normal","molecule":"genomic DNA","disease":"presumed normal","markers":"CD8+","passage_if_expanded":"NA","cell_type":"CD45RA CD8","donor_ethnicity":"NA","donor_sex":"Unknown","biomaterial_type":"Primary Cell","donor_id":"Donor 101 8 pooled leukopaks Jan 20 2011","biomaterial_provider":"Dana Farber","donor_age":"NA","chip_protocol_bead_type":"Protein A-Sepharose 4B","chip_antibody":"H3K4me1","chip_protocol_chromatin_amount":"0.5 to 3 million cells","extraction_protocol":"cell/nuclei lysis","chip_protocol_antibody_amount":"~1 ug","chip_protocol_bead_amount":"10 ul bed volume","chip_protocol":"Bernstein_BROAD_ENCODE_protocol","extraction_protocol_sonication_cycles":"1","chip_antibody_catalog":"ab8895","chip_antibody_provider":"Abcam","chip_antibody_lot":"659352","experiment_type":"Histone H3K4me1","extraction_protocol_type_of_sonicator":"Branson","original_filename":"GSM773032_BI.CD8_Naive_Primary_Cells.H3K4me1.Donor_101_8_pooled_leukopaks_Jan_20_2011"},"geolst":["GSM773032"]},{"type":"bigWig","name":"E047 H3K4me1 of CD8 naive primary cells","url":"http://egg.wustl.edu/d/hg19/GSM772853_0.bigWig","public":true,"mode":1,"qtc":{"anglescale":1,"pr":238,"pg":236,"pb":51,"nr":255,"ng":0,"nb":0,"pth":"rgb(238,236,51)","nth":"#800000","thtype":2,"thmin":0,"thmax":10,"thpercentile":98,"height":5,"summeth":1,"smooth":7},"annotation":["13021","22010","30003","40174","60003","70009"],"custom_annotation":["17","bigWig"],"details":{"sample_alias":"BioSam 184","sample_common_name":"CD8 Naive Primary Cells","donor_health_status":"presumed normal","molecule":"genomic DNA","disease":"presumed normal","markers":"CD8+","passage_if_expanded":"NA","cell_type":"CD45RA CD8","donor_ethnicity":"NA","donor_sex":"Unknown","biomaterial_type":"Primary Cell","donor_id":"Donor 100 7 pooled leukopaks Jan 7 2011","biomaterial_provider":"Dana Farber","donor_age":"NA","chip_protocol_bead_type":"Protein A-Sepharose 4B","chip_antibody":"H3K4me1","chip_protocol_chromatin_amount":"0.5 to 3 million cells","extraction_protocol":"cell/nuclei lysis","chip_protocol_antibody_amount":"~1 ug","chip_protocol_bead_amount":"10 ul bed volume","chip_protocol":"Bernstein_BROAD_ENCODE_protocol","extraction_protocol_sonication_cycles":"1","chip_antibody_catalog":"ab8895","chip_antibody_provider":"Abcam","chip_antibody_lot":"659352","experiment_type":"Histone H3K4me1","extraction_protocol_type_of_sonicator":"Branson","original_filename":"GSM772853_BI.CD8_Naive_Primary_Cells.H3K4me1.Donor_100_7_pooled_leukopaks_Jan_7_2011"},"geolst":["GSM772853"]},{"type":"bigWig","name":"E035 H3K4me1 of CD34 primary cells","url":"http://egg.wustl.edu/d/hg19/GSM486707.bigWig","public":true,"mode":1,"qtc":{"anglescale":1,"pr":238,"pg":236,"pb":51,"nr":255,"ng":0,"nb":0,"pth":"rgb(238,236,51)","nth":"#800000","thtype":2,"thmin":0,"thmax":10,"thpercentile":98,"height":5,"summeth":1,"smooth":7},"annotation":["13019","22010","30003","40026","60003","70009"],"custom_annotation":["2","bigWig"],"details":{"molecule":"genomic DNA"," disease":"none","biomaterial_provider":"FHCRC","biomaterial_type":"Primary Cell","cell_type":"CD34 Primary Cells","markers":"CD34+","donor_id":"CD34_39889","donor_age":"NA","donor_health_status":"none","donor_sex":"Unknown","donor_ethnicity":"NA","passage_if_expanded":"NA","experiment_type":"Histone H3K4me1","extraction_protocol":"SDS lysis","extraction_protocol_type_of_sonicator":"Bioruptor","extraction_protocol_sonication_cycles":"1","chip_protocol":"Bernstein_BROAD_ENCODE_protocol","chip_protocol_chromatin_amount":"10 million cells","chip_protocol_bead_type":"Protein A-Sepharose 4B","chip_protocol_bead_amount":"70 ul bed volume","chip_protocol_antibody_amount":"2 - 15 ug","chip_antibody":"H3K4Me1","chip_antibody_provider":"Abcam","chip_antibody_catalog":"ab8895","chip_antibody_lot":"151302","original_filename":"GSM486707_BI.CD34_Primary_Cells.H3K4me1.CD34_39889.bigWig","Embargo end date":"2011-02-11"},"geolst":["GSM486707"]},{"type":"bigWig","name":"E035 H3K4me1 of CD34 primary cells","url":"http://egg.wustl.edu/d/hg19/GSM486708.bigWig","public":true,"mode":1,"qtc":{"anglescale":1,"pr":238,"pg":236,"pb":51,"nr":255,"ng":0,"nb":0,"pth":"rgb(238,236,51)","nth":"#800000","thtype":2,"thmin":0,"thmax":10,"thpercentile":98,"height":5,"summeth":1,"smooth":7},"annotation":["13019","22010","30003","40027","60003","70009"],"custom_annotation":["2","bigWig"],"details":{"molecule":"genomic DNA"," disease":"none","biomaterial_provider":"FHCRC","biomaterial_type":"Primary Cell","cell_type":"CD34 Primary Cells","markers":"CD34+","donor_id":"CD34_39811","donor_age":"NA","donor_health_status":"none","donor_sex":"Unknown","donor_ethnicity":"NA","passage_if_expanded":"NA","experiment_type":"Histone H3K4me1","extraction_protocol":"SDS lysis","extraction_protocol_type_of_sonicator":"Bioruptor","extraction_protocol_sonication_cycles":"1","chip_protocol":"Bernstein_BROAD_ENCODE_protocol","chip_protocol_chromatin_amount":"10 million cells","chip_protocol_bead_type":"Protein A-Sepharose 4B","chip_protocol_bead_amount":"70 ul bed volume","chip_protocol_antibody_amount":"2 - 15 ug","chip_antibody":"H3K4Me1","chip_antibody_provider":"Abcam","chip_antibody_catalog":"ab8895","chip_antibody_lot":"151302","original_filename":"GSM486708_BI.CD34_Primary_Cells.H3K4me1.CD34_39811.bigWig","Embargo end date":"2011-01-28"},"geolst":["GSM486708"]},{"type":"bigWig","name":"E051 H3K4me1 of mobilized CD34 primary cells","url":"http://egg.wustl.edu/d/hg19/GSM537650.bigWig","public":true,"mode":1,"qtc":{"anglescale":1,"pr":238,"pg":236,"pb":51,"nr":255,"ng":0,"nb":0,"pth":"rgb(238,236,51)","nth":"#800000","thtype":2,"thmin":0,"thmax":10,"thpercentile":98,"height":5,"summeth":1,"smooth":7},"annotation":["13023","22010","30003","40021","60003","70009"],"custom_annotation":["2","bigWig"],"details":{"molecule":"genomic DNA"," disease":"none","biomaterial_provider":"FHCRC","biomaterial_type":"Primary Cell","cell_type":"Mobilized CD34 Primary Cells","markers":"CD34+","donor_id":"RO 01508","donor_age":"NA","donor_health_status":"none","donor_sex":"Unknown","donor_ethnicity":"NA","passage_if_expanded":"not passaged","experiment_type":"Histone H3K4me1","extraction_protocol":"SDS lysis","extraction_protocol_type_of_sonicator":"Bioruptor","extraction_protocol_sonication_cycles":"1","chip_protocol":"Bernstein_BROAD_ENCODE_protocol","chip_protocol_chromatin_amount":"10 million cells","chip_protocol_bead_type":"Protein A-Sepharose 4B","chip_protocol_bead_amount":"70 ul bed volume","chip_protocol_antibody_amount":"2-15 ug","chip_antibody":"H3K4Me1","chip_antibody_provider":"Abcam","chip_antibody_catalog":"ab8895","chip_antibody_lot":"151302","original_filename":"GSM537650_BI.Mobilized_CD34_Primary_Cells.H3K4me1.Mobilized_CD34_5_28_09.bigWig","Embargo end date":"2011-01-28"},"geolst":["GSM537650"]},{"type":"bigWig","name":"E051 H3K4me1 of mobilized CD34 primary cells","url":"http://egg.wustl.edu/d/hg19/GSM621451.bigWig","public":true,"mode":1,"qtc":{"anglescale":1,"pr":238,"pg":236,"pb":51,"nr":255,"ng":0,"nb":0,"pth":"rgb(238,236,51)","nth":"#800000","thtype":2,"thmin":0,"thmax":10,"thpercentile":98,"height":5,"summeth":1,"smooth":7},"annotation":["13023","22010","30003","40023","60002","70004"],"custom_annotation":["2","bigWig"],"details":{"donor_health_status":"NA"," molecule":"genomic DNA","disease":"none","markers":"CD34+","passage_if_expanded":"NA","cell_type":"Mobilized CD34","donor_ethnicity":"Cauc","donor_sex":"Female","biomaterial_type":"Primary Cell","donor_id":"RO 01549","biomaterial_provider":"UW","donor_age":"NA","chip_protocol_bead_type":"Protein A-Sepharose 4B","chip_antibody":"H3K4Me1","chip_protocol_chromatin_amount":"10 million cells","extraction_protocol":"SDS lysis","chip_protocol_antibody_amount":"2-15 ug","chip_protocol_bead_amount":"70 ul bed volume","chip_protocol":"Bernstein_BROAD_ENCODE_protocol","extraction_protocol_sonication_cycles":"1","chip_antibody_catalog":"ab8895","chip_antibody_provider":"Abcam","chip_antibody_lot":"151302","experiment_type":"Histone H3K4me1","extraction_protocol_type_of_sonicator":"Bioruptor","original_filename":"GSM621451_BI.Mobilized_CD34_Primary_Cells.H3K4me1.UW_RO_01549.bigWig","Embargo end date":"2011-08-12"},"geolst":["GSM621451"]},{"type":"bigWig","name":"E051 H3K4me1 of mobilized CD34 primary cells","url":"http://egg.wustl.edu/d/hg19/GSM669907.bigWig","public":true,"mode":1,"qtc":{"anglescale":1,"pr":238,"pg":236,"pb":51,"nr":255,"ng":0,"nb":0,"pth":"rgb(238,236,51)","nth":"#800000","thtype":2,"thmin":0,"thmax":10,"thpercentile":98,"height":5,"summeth":1,"smooth":7},"annotation":["13023","22010","30003","40025","60003","70009"],"custom_annotation":["2","bigWig"],"details":{"sample_alias":"188"," sample_common_name":"CD34 Cultured Cells","donor_health_status":"NA","molecule":"genomic DNA","disease":"none","markers":"CD34+","passage_if_expanded":"short term","cell_type":"cultured CD34","donor_ethnicity":"NA","donor_sex":"Unknown","biomaterial_type":"Primary Cell","donor_id":"123","biomaterial_provider":"FHCRC","donor_age":"NA","chip_protocol_bead_type":"Protein A-Sepharose 4B","chip_antibody":"H3K4Me1","chip_protocol_chromatin_amount":"10 million cells","extraction_protocol":"SDS lysis","chip_protocol_antibody_amount":"2-15 ug","chip_protocol_bead_amount":"70 ul bed volume","chip_protocol":"Bernstein_BROAD_ENCODE_protocol","extraction_protocol_sonication_cycles":"1","chip_antibody_catalog":"ab8895","chip_antibody_provider":"Abcam","chip_antibody_lot":"151302","experiment_type":"Histone H3K4me1","extraction_protocol_type_of_sonicator":"Bioruptor","original_filename":"GSM669907_BI.CD34_Cultured_Cells.H3K4me1.123.bigWig","Embargo end date":"2011-12-31"},"geolst":["GSM669907"]},{"type":"bigWig","name":"E051 H3K4me1 of mobilized CD34 primary cells","url":"http://egg.wustl.edu/d/hg19/GSM706845_0.bigWig","public":true,"mode":1,"qtc":{"anglescale":1,"pr":238,"pg":236,"pb":51,"nr":255,"ng":0,"nb":0,"pth":"rgb(238,236,51)","nth":"#800000","thtype":2,"thmin":0,"thmax":10,"thpercentile":98,"height":5,"summeth":1,"smooth":7},"annotation":["13023","22010","30003","40022","60002","70004"],"custom_annotation":["2","bigWig"],"details":{"sample_alias":"RO 01480","sample_common_name":"CD34 Primary Cells","molecule":"genomic DNA","disease":"None","biomaterial_provider":"FHCRC HEIMFELD","biomaterial_type":"Primary Cell","cell_type":"CD34 Primary Cells","markers":"CD34+","donor_id":"RO 01480","donor_age":"27 years","donor_health_status":"NA","donor_sex":"Female","donor_ethnicity":"Caucasian","passage_if_expanded":"NA","chip_protocol_bead_type":"Protein A-Sepharose 4B","chip_antibody":"H3K4me1","chip_protocol_chromatin_amount":"10 million cells","extraction_protocol":"SDS lysis","chip_protocol_antibody_amount":"2-15 ug","chip_protocol_bead_amount":"70 ul bed volume","chip_protocol":"Bernstein_BROAD_ENCODE_protocol","extraction_protocol_sonication_cycles":"1","chip_antibody_catalog":"ab8895","chip_antibody_provider":"Abcam","chip_antibody_lot":"151302","experiment_type":"Histone H3K4me1","extraction_protocol_type_of_sonicator":"Bioruptor","original_filename":"GSM706845_BI.Mobilized_CD34_Primary_Cells.H3K4me1.RO_01480.bigWig"},"geolst":["GSM706845"]},{"type":"bigWig","name":"E051 H3K4me1 of mobilized CD34 primary cells","url":"http://egg.wustl.edu/d/hg19/GSM773043_0.bigWig","public":true,"mode":1,"qtc":{"anglescale":1,"pr":238,"pg":236,"pb":51,"nr":255,"ng":0,"nb":0,"pth":"rgb(238,236,51)","nth":"#800000","thtype":2,"thmin":0,"thmax":10,"thpercentile":98,"height":5,"summeth":1,"smooth":7},"annotation":["13023","22010","30003","40077","60001","70004"],"custom_annotation":["2","bigWig"],"details":{"sample_alias":"RO 01562","sample_common_name":"CD34 Primary Cells","molecule":"genomic DNA","disease":"None","biomaterial_provider":"FHCRC HEIMFELD","biomaterial_type":"Primary Cell","cell_type":"CD34 Primary Cells","markers":"CD34+","donor_id":"RO 01562","donor_age":"42 years","donor_health_status":"NA","donor_sex":"Male","donor_ethnicity":"Caucasian","passage_if_expanded":"NA","chip_protocol_bead_type":"Protein A-Sepharose 4B","chip_antibody":"H3K4Me1","chip_protocol_chromatin_amount":"10 million cells","extraction_protocol":"SDS lysis","chip_protocol_antibody_amount":"2-15 ug","chip_protocol_bead_amount":"70 ul bed volume","chip_protocol":"Bernstein_BROAD_ENCODE_protocol","extraction_protocol_sonication_cycles":"1","chip_antibody_catalog":"ab8895","chip_antibody_provider":"Abcam","chip_antibody_lot":"151302","experiment_type":"Histone H3K4me1","extraction_protocol_type_of_sonicator":"Bioruptor","original_filename":"GSM773043_BI.Mobilized_CD34_Primary_Cells.H3K4me1.RO_01562.bigWig"},"geolst":["GSM773043"]},{"type":"bigWig","name":"E051 H3K4me1 of mobilized CD34 primary cells","url":"http://egg.wustl.edu/d/hg19/GSM772734_0.bigWig","public":true,"mode":1,"qtc":{"anglescale":1,"pr":238,"pg":236,"pb":51,"nr":255,"ng":0,"nb":0,"pth":"rgb(238,236,51)","nth":"#800000","thtype":2,"thmin":0,"thmax":10,"thpercentile":98,"height":5,"summeth":1,"smooth":7},"annotation":["13023","22010","30003","40024","60002","70010"],"custom_annotation":["2","bigWig"],"details":{"sample_alias":"RO 01536","sample_common_name":"CD34 Primary Cells","molecule":"genomic DNA","disease":"None","biomaterial_provider":"FHCRC HEIMFELD","biomaterial_type":"Primary Cell","cell_type":"CD34 Primary Cells","markers":"CD34+","donor_id":"RO 01536","donor_age":"27 years","donor_health_status":"NA","donor_sex":"Female","donor_ethnicity":"Hispanic","passage_if_expanded":"NA","chip_protocol_bead_type":"Protein A-Sepharose 4B","chip_antibody":"H3K4me1","chip_protocol_chromatin_amount":"10 million cells","extraction_protocol":"SDS lysis","chip_protocol_antibody_amount":"2-15 ug","chip_protocol_bead_amount":"70 ul bed volume","chip_protocol":"Bernstein_BROAD_ENCODE_protocol","extraction_protocol_sonication_cycles":"1","chip_antibody_catalog":"ab8895","chip_antibody_provider":"Abcam","chip_antibody_lot":"151302","experiment_type":"Histone H3K4me1","extraction_protocol_type_of_sonicator":"Bioruptor","original_filename":"GSM772734_BI.Mobilized_CD34_Primary_Cells.H3K4me1.RO_01536.bigWig"},"geolst":["GSM772734"]},{"type":"bigWig","name":"E051 H3K4me1 of mobilized CD34 primary cells","url":"http://egg.wustl.edu/d/hg19/GSM772734_1.bigWig","public":true,"mode":1,"qtc":{"anglescale":1,"pr":238,"pg":236,"pb":51,"nr":255,"ng":0,"nb":0,"pth":"rgb(238,236,51)","nth":"#800000","thtype":2,"thmin":0,"thmax":10,"thpercentile":98,"height":5,"summeth":1,"smooth":7},"annotation":["13023","22010","30003","40024","60002","70010"],"custom_annotation":["2","bigWig"],"details":{"sample_alias":"RO 01536","sample_common_name":"CD34 Primary Cells","molecule":"genomic DNA","disease":"None","biomaterial_provider":"FHCRC HEIMFELD","biomaterial_type":"Primary Cell","cell_type":"CD34 Primary Cells","markers":"CD34+","donor_id":"RO 01536","donor_age":"27 years","donor_health_status":"NA","donor_sex":"Female","donor_ethnicity":"Hispanic","passage_if_expanded":"NA","chip_protocol_bead_type":"Protein A-Sepharose 4B","chip_antibody":"H3K4me1","chip_protocol_chromatin_amount":"10 million cells","extraction_protocol":"SDS lysis","chip_protocol_antibody_amount":"2-15 ug","chip_protocol_bead_amount":"70 ul bed volume","chip_protocol":"Bernstein_BROAD_ENCODE_protocol","extraction_protocol_sonication_cycles":"1","chip_antibody_catalog":"ab8895","chip_antibody_provider":"Abcam","chip_antibody_lot":"151302","experiment_type":"Histone H3K4me1","extraction_protocol_type_of_sonicator":"Bioruptor","original_filename":"GSM772734_BI.Mobilized_CD34_Primary_Cells.H3K4me1.RO_01536_release5.bigWig"},"geolst":["GSM772734"]},{"type":"bigWig","name":"E036 H3K4me1 of CD34 cultured cells","url":"http://egg.wustl.edu/d/hg19/GSM537628.bigWig","public":true,"mode":1,"qtc":{"anglescale":1,"pr":238,"pg":236,"pb":51,"nr":255,"ng":0,"nb":0,"pth":"rgb(238,236,51)","nth":"#800000","thtype":2,"thmin":0,"thmax":10,"thpercentile":98,"height":5,"summeth":1,"smooth":7},"annotation":["13046","22010","30003","40020","60003","70009"],"custom_annotation":["2","bigWig"],"details":{"molecule":"genomic DNA"," disease":"none","biomaterial_provider":"FHCRC","biomaterial_type":"Primary Cell","cell_type":"CD34 Cultured Cells","markers":"CD34+","donor_id":"cultured CD34_2/20/09","donor_age":"NA","donor_health_status":"none","donor_sex":"Unknown","donor_ethnicity":"NA","passage_if_expanded":"short term","experiment_type":"Histone H3K4me1","extraction_protocol":"SDS lysis","extraction_protocol_type_of_sonicator":"Bioruptor","extraction_protocol_sonication_cycles":"1","chip_protocol":"Bernstein_BROAD_ENCODE_protocol","chip_protocol_chromatin_amount":"10 million cells","chip_protocol_bead_type":"Protein A-Sepharose 4B","chip_protocol_bead_amount":"70 ul bed volume","chip_protocol_antibody_amount":"2-15 ug","chip_antibody":"H3K4Me1","chip_antibody_provider":"Abcam","chip_antibody_catalog":"ab8895","chip_antibody_lot":"151302","original_filename":"GSM537628_BI.CD34_Cultured_Cells.H3K4me1.cultured_CD34_2_20_09.bigWig","Embargo end date":"2011-01-28"},"geolst":["GSM537628"]},{"type":"bigWig","name":"E032 H3K4me1 of human CD19 cells","url":"http://egg.wustl.edu/d/hg19/GSM916053_1.bigWig","public":true,"mode":1,"qtc":{"anglescale":1,"pr":238,"pg":236,"pb":51,"nr":255,"ng":0,"nb":0,"pth":"rgb(238,236,51)","nth":"#800000","thtype":2,"thmin":0,"thmax":10,"thpercentile":98,"height":5,"summeth":1,"smooth":7},"annotation":["13028","22010","30003","40194","60002","70009"],"custom_annotation":["2","bigWig"],"details":{"sample alias":"195","sample common name":"CD19 Primary Cells","donor_health_status":"presumed normal","molecule":"genomic DNA","disease":"presumed normal","markers":"CD19+","passage_if_expanded":"NA","cell_type":"CD19","donor_ethnicity":"NA","donor_sex":"Female","biomaterial_type":"Primary Cell","donor_id":"130","biomaterial_provider":"FHCRC","donor_age":"NA","chip_protocol_bead_type":"Protein A-Sepharose 4B","chip_antibody":"H3K4me1","chip_protocol_chromatin_amount":"0.5 to 3 million cells","extraction_protocol":"cell/nuclei lysis","chip_protocol_antibody_amount":"~1 ug","chip_protocol_bead_amount":"10 ul bed volume","chip_protocol":"Bernstein_BROAD_ENCODE_protocol","extraction_protocol_sonication_cycles":"1","chip_antibody_catalog":"ab8895","chip_antibody_provider":"Abcam","chip_antibody_lot":"151304","experiment_type":"Histone H3K4me1","extraction_protocol_type_of_sonicator":"Branson","original_filename":"BI.CD19_Primary_Cells.H3K4me1.130.bigWig"},"geolst":["GSM916053"]},{"type":"bigWig","name":"E030 H3K4me1 of CD15 primary cells","url":"http://egg.wustl.edu/d/hg19/GSM773038_0.bigWig","public":true,"mode":1,"qtc":{"anglescale":1,"pr":238,"pg":236,"pb":51,"nr":255,"ng":0,"nb":0,"pth":"rgb(238,236,51)","nth":"#800000","thtype":2,"thmin":0,"thmax":10,"thpercentile":98,"height":5,"summeth":1,"smooth":7},"annotation":["13029","22010","30003","40052","60001","70009"],"custom_annotation":["2","bigWig"],"details":{"sample_alias":"28.0","sample_common_name":"CD15 Primary Cells","molecule":"genomic DNA","disease":"none","biomaterial_provider":"FHCRC","biomaterial_type":"Primary Cell","cell_type":"CD15 Primary Cells","markers":"CD15+","donor_id":"23.0","donor_age":"NA","donor_health_status":"none","donor_sex":"Male","donor_ethnicity":"NA","passage_if_expanded":"NA","chip_protocol_bead_type":"Protein A-Sepharose 4B","chip_antibody":"H3K4me1","chip_protocol_chromatin_amount":"10 million cells","extraction_protocol":"SDS lysis","chip_protocol_antibody_amount":"2-15 ug","chip_protocol_bead_amount":"70 ul bed volume","chip_protocol":"Bernstein_BROAD_ENCODE_protocol","extraction_protocol_sonication_cycles":"1","chip_antibody_catalog":"ab8895","chip_antibody_provider":"Abcam","chip_antibody_lot":"151302","experiment_type":"Histone H3K4me1","extraction_protocol_type_of_sonicator":"Bioruptor","original_filename":"GSM773038_BI.CD15_Primary_Cells.H3K4me1.23"},"geolst":["GSM773038"]},{"type":"bigWig","name":"E026 H3K4me1 of bone marrow derived mesenchymal stem cell","url":"http://egg.wustl.edu/d/hg19/GSM621402.bigWig","public":true,"mode":1,"qtc":{"anglescale":1,"pr":238,"pg":236,"pb":51,"nr":255,"ng":0,"nb":0,"pth":"rgb(238,236,51)","nth":"#800000","thtype":2,"thmin":0,"thmax":10,"thpercentile":98,"height":5,"summeth":1,"smooth":7},"annotation":["13011","22010","30003","40007","60003","70009"],"custom_annotation":["11","bigWig"],"details":{"donor_health_status":"healthy"," molecule":"genomic DNA","disease":"none","markers":"NA","passage_if_expanded":"NA","cell_type":"BM-MSC","donor_ethnicity":"NA","donor_sex":"Unknown","biomaterial_type":"Primary Cell","donor_id":"57","biomaterial_provider":"Rikshospitalet University Hospital","donor_age":"NA","chip_protocol_bead_type":"Protein A-Sepharose 4B","chip_antibody":"H3K4Me1","chip_protocol_chromatin_amount":"10 million cells","extraction_protocol":"SDS lysis","chip_protocol_antibody_amount":"2-15 ug","chip_protocol_bead_amount":"70 ul bed volume","chip_protocol":"Bernstein_BROAD_ENCODE_protocol","extraction_protocol_sonication_cycles":"1","chip_antibody_catalog":"ab8895","chip_antibody_provider":"Abcam","chip_antibody_lot":"151304","experiment_type":"Histone H3K4me1","extraction_protocol_type_of_sonicator":"Bioruptor","original_filename":"GSM621402_BI.Bone_Marrow_Derived_Mesenchymal_Stem_Cell_Cultured_Cells.H3K4me1.57.bigWig","Embargo end date":"2011-08-12"},"geolst":["GSM621402"]},{"type":"bigWig","name":"E026 H3K4me1 of bone marrow derived mesenchymal stem cell","url":"http://egg.wustl.edu/d/hg19/GSM669911.bigWig","public":true,"mode":1,"qtc":{"anglescale":1,"pr":238,"pg":236,"pb":51,"nr":255,"ng":0,"nb":0,"pth":"rgb(238,236,51)","nth":"#800000","thtype":2,"thmin":0,"thmax":10,"thpercentile":98,"height":5,"summeth":1,"smooth":7},"annotation":["13011","22010","30003","40009","60003","70009"],"custom_annotation":["11","bigWig"],"details":{"sample_alias":"76B"," sample_common_name":"Bone Marrow Derived Mesenchymal Stem Cell Cultured Cells","donor_health_status":"healthy","molecule":"genomic DNA","disease":"none","markers":"NA","culture_conditions":"Medium","passage_if_expanded":"NA","cell_type":"BM-MSC","donor_ethnicity":"NA","donor_sex":"Unknown","biomaterial_type":"Primary Cell Culture","donor_id":"58","biomaterial_provider":"Rikshospitalet University Hospital","donor_age":"NA","chip_protocol_bead_type":"Protein A-Sepharose 4B","chip_antibody":"H3K4Me1","chip_protocol_chromatin_amount":"10 million cells","extraction_protocol":"SDS lysis","chip_protocol_antibody_amount":"2-15 ug","chip_protocol_bead_amount":"70 ul bed volume","chip_protocol":"Bernstein_BROAD_ENCODE_protocol","extraction_protocol_sonication_cycles":"1","chip_antibody_catalog":"ab8895","chip_antibody_provider":"Abcam","chip_antibody_lot":"151304","experiment_type":"Histone H3K4me1","extraction_protocol_type_of_sonicator":"Bioruptor","original_filename":"GSM669911_BI.Bone_Marrow_Derived_Mesenchymal_Stem_Cell_Cultured_Cells.H3K4me1.58.bigWig","Embargo end date":"2011-12-31"},"geolst":["GSM669911"]},{"type":"bigWig","name":"E026 H3K4me1 of bone marrow derived mesenchymal stem cell","url":"http://egg.wustl.edu/d/hg19/GSM669920.bigWig","public":true,"mode":1,"qtc":{"anglescale":1,"pr":238,"pg":236,"pb":51,"nr":255,"ng":0,"nb":0,"pth":"rgb(238,236,51)","nth":"#800000","thtype":2,"thmin":0,"thmax":10,"thpercentile":98,"height":5,"summeth":1,"smooth":7},"annotation":["13011","22010","30003","40008","60003","70009"],"custom_annotation":["11","bigWig"],"details":{"sample_alias":"77"," sample_common_name":"Bone Marrow Derived Mesenchymal Stem Cell Cultured Cells","donor_health_status":"healthy","molecule":"genomic DNA","disease":"none","markers":"NA","culture_conditions":"Medium","passage_if_expanded":"NA","cell_type":"BM-MSC","donor_ethnicity":"NA","donor_sex":"Unknown","biomaterial_type":"Primary Cell Culture","donor_id":"59","biomaterial_provider":"Rikshospitalet University Hospital","donor_age":"NA","chip_protocol_bead_type":"Protein A-Sepharose 4B","chip_antibody":"H3K4Me1","chip_protocol_chromatin_amount":"10 million cells","extraction_protocol":"SDS lysis","chip_protocol_antibody_amount":"2-15 ug","chip_protocol_bead_amount":"70 ul bed volume","chip_protocol":"Bernstein_BROAD_ENCODE_protocol","extraction_protocol_sonication_cycles":"1","chip_antibody_catalog":"ab8895","chip_antibody_provider":"Abcam","chip_antibody_lot":"151304","experiment_type":"Histone H3K4me1","extraction_protocol_type_of_sonicator":"Bioruptor","original_filename":"GSM669920_BI.Bone_Marrow_Derived_Mesenchymal_Stem_Cell_Cultured_Cells.H3K4me1.59.bigWig","Embargo end date":"2011-12-31"},"geolst":["GSM669920"]},{"type":"bigWig","name":"E026 H3K4me1 of bone marrow derived mesenchymal stem cell","url":"http://egg.wustl.edu/d/hg19/GSM669980.bigWig","public":true,"mode":1,"qtc":{"anglescale":1,"pr":238,"pg":236,"pb":51,"nr":255,"ng":0,"nb":0,"pth":"rgb(238,236,51)","nth":"#800000","thtype":2,"thmin":0,"thmax":10,"thpercentile":98,"height":5,"summeth":1,"smooth":7},"annotation":["13011","22010","30003","40010","60003","70009"],"custom_annotation":["11","bigWig"],"details":{"sample_alias":"78"," sample_common_name":"Bone Marrow Derived Mesenchymal Stem Cell Cultured Cells","donor_health_status":"healthy","molecule":"genomic DNA","disease":"none","markers":"NA","culture_conditions":"Medium","passage_if_expanded":"NA","cell_type":"BM-MSC","donor_ethnicity":"NA","donor_sex":"Unknown","biomaterial_type":"Primary Cell Culture","donor_id":"60","biomaterial_provider":"Rikshospitalet University Hospital","donor_age":"NA","chip_protocol_bead_type":"Protein A-Sepharose 4B","chip_antibody":"H3K4Me1","chip_protocol_chromatin_amount":"10 million cells","extraction_protocol":"SDS lysis","chip_protocol_antibody_amount":"2-15 ug","chip_protocol_bead_amount":"70 ul bed volume","chip_protocol":"Bernstein_BROAD_ENCODE_protocol","extraction_protocol_sonication_cycles":"1","chip_antibody_catalog":"ab8895","chip_antibody_provider":"Abcam","chip_antibody_lot":"151304","experiment_type":"Histone H3K4me1","extraction_protocol_type_of_sonicator":"Bioruptor","original_filename":"GSM669980_BI.Bone_Marrow_Derived_Mesenchymal_Stem_Cell_Cultured_Cells.H3K4me1.60.bigWig","Embargo end date":"2011-12-31"},"geolst":["GSM669980"]},{"type":"bigWig","name":"E025 H3K4me1 of Adipose Derived Mesenchymal Stem Cell Cultured Cells","url":"http://egg.wustl.edu/d/hg19/GSM772762_0.bigWig","public":true,"mode":1,"qtc":{"anglescale":1,"pr":238,"pg":236,"pb":51,"nr":255,"ng":0,"nb":0,"pth":"rgb(238,236,51)","nth":"#800000","thtype":2,"thmin":0,"thmax":10,"thpercentile":98,"height":5,"summeth":1,"smooth":7},"annotation":["11315","22010","30003","40006","60002","70009"],"custom_annotation":["11","bigWig"],"details":{"sample_alias":"213","sample_common_name":"Adipose Derived Mesenchymal Stem Cell Cultured Cells","donor_health_status":"NA","molecule":"genomic DNA","disease":"none","markers":"NA","culture_conditions":"Medium","passage_if_expanded":"NA","cell_type":"ADMSC undiff Day0","donor_ethnicity":"NA","donor_sex":"Female","biomaterial_type":"Primary Cell Culture","donor_id":"93","biomaterial_provider":"Harvard University","donor_age":"41","chip_protocol_bead_type":"Protein A-Sepharose 4B","chip_antibody":"H3K4Me1","chip_protocol_chromatin_amount":"10 million cells","extraction_protocol":"SDS lysis","chip_protocol_antibody_amount":"2-15 ug","chip_protocol_bead_amount":"70 ul bed volume","chip_protocol":"Bernstein_BROAD_ENCODE_protocol","extraction_protocol_sonication_cycles":"1","chip_antibody_catalog":"ab8895","chip_antibody_provider":"Abcam","chip_antibody_lot":"659352","experiment_type":"Histone H3K4me1","extraction_protocol_type_of_sonicator":"Bioruptor","original_filename":"GSM772762_BI.Adipose_Derived_Mesenchymal_Stem_Cell_Cultured_Cells.H3K4me1.93"},"geolst":["GSM772762"]},{"type":"bigWig","name":"E025 H3K4me1 of Adipose Derived Mesenchymal Stem Cell Cultured Cells","url":"http://egg.wustl.edu/d/hg19/GSM772748_0.bigWig","public":true,"mode":1,"qtc":{"anglescale":1,"pr":238,"pg":236,"pb":51,"nr":255,"ng":0,"nb":0,"pth":"rgb(238,236,51)","nth":"#800000","thtype":2,"thmin":0,"thmax":10,"thpercentile":98,"height":5,"summeth":1,"smooth":7},"annotation":["11315","22010","30003","40004","60002","70009"],"custom_annotation":["11","bigWig"],"details":{"sample_alias":"212","sample_common_name":"Adipose Derived Mesenchymal Stem Cell Cultured Cells","donor_health_status":"NA","molecule":"genomic DNA","disease":"none","markers":"NA","culture_conditions":"Medium","passage_if_expanded":"NA","cell_type":"ADMSC undiff Day0","donor_ethnicity":"NA","donor_sex":"Female","biomaterial_type":"Primary Cell Culture","donor_id":"92","biomaterial_provider":"Harvard University","donor_age":"59","chip_protocol_bead_type":"Protein A-Sepharose 4B","chip_antibody":"H3K4Me1","chip_protocol_chromatin_amount":"10 million cells","extraction_protocol":"SDS lysis","chip_protocol_antibody_amount":"2-15 ug","chip_protocol_bead_amount":"70 ul bed volume","chip_protocol":"Bernstein_BROAD_ENCODE_protocol","extraction_protocol_sonication_cycles":"1","chip_antibody_catalog":"ab8895","chip_antibody_provider":"Abcam","chip_antibody_lot":"659352","experiment_type":"Histone H3K4me1","extraction_protocol_type_of_sonicator":"Bioruptor","original_filename":"GSM772748_BI.Adipose_Derived_Mesenchymal_Stem_Cell_Cultured_Cells.H3K4me1.92"},"geolst":["GSM772748"]},{"type":"bigWig","name":"E023 H3K4me1 of Mesenchymal Stem Cell Derived Adipocyte Cultured Cells","url":"http://egg.wustl.edu/d/hg19/GSM772816_0.bigWig","public":true,"mode":1,"qtc":{"anglescale":1,"pr":238,"pg":236,"pb":51,"nr":255,"ng":0,"nb":0,"pth":"rgb(238,236,51)","nth":"#800000","thtype":2,"thmin":0,"thmax":10,"thpercentile":98,"height":5,"summeth":1,"smooth":7},"annotation":["11314","22010","30003","40004","60002","70009"],"custom_annotation":["11","bigWig"],"details":{"sample_alias":"212A","sample_common_name":"Mesenchymal Stem Cell Derived Adipocyte Cultured Cells","donor_health_status":"NA","molecule":"genomic DNA","disease":"none","markers":"NA","culture_conditions":"Differentiation Method","passage_if_expanded":"NA","cell_type":"ADMSC Diff Day20","donor_ethnicity":"NA","donor_sex":"Female","biomaterial_type":"Primary Cell Culture","donor_id":"92","biomaterial_provider":"Harvard University","donor_age":"59","chip_protocol_bead_type":"Protein A-Sepharose 4B","chip_antibody":"H3K4Me1","chip_protocol_chromatin_amount":"10 million cells","extraction_protocol":"SDS lysis","chip_protocol_antibody_amount":"2-15 ug","chip_protocol_bead_amount":"70 ul bed volume","chip_protocol":"Bernstein_BROAD_ENCODE_protocol","extraction_protocol_sonication_cycles":"1","chip_antibody_catalog":"ab8895","chip_antibody_provider":"Abcam","chip_antibody_lot":"659352","experiment_type":"Histone H3K4me1","extraction_protocol_type_of_sonicator":"Bioruptor","original_filename":"GSM772816_BI.Mesenchymal_Stem_Cell_Derived_Adipocyte_Cultured_Cells.H3K4me1.92"},"geolst":["GSM772816"]},{"type":"bigWig","name":"E023 H3K4me1 of Mesenchymal Stem Cell Derived Adipocyte Cultured Cells","url":"http://egg.wustl.edu/d/hg19/GSM772745_0.bigWig","public":true,"mode":1,"qtc":{"anglescale":1,"pr":238,"pg":236,"pb":51,"nr":255,"ng":0,"nb":0,"pth":"rgb(238,236,51)","nth":"#800000","thtype":2,"thmin":0,"thmax":10,"thpercentile":98,"height":5,"summeth":1,"smooth":7},"annotation":["11314","22010","30003","40006","60002","70009"],"custom_annotation":["11","bigWig"],"details":{"sample_alias":"213A","sample_common_name":"Mesenchymal Stem Cell Derived Adipocyte Cultured Cells","donor_health_status":"NA","molecule":"genomic DNA","disease":"none","markers":"NA","culture_conditions":"Differentiation Method","passage_if_expanded":"NA","cell_type":"ADMSC Diff Day20","donor_ethnicity":"NA","donor_sex":"Female","biomaterial_type":"Primary Cell Culture","donor_id":"93","biomaterial_provider":"Harvard University","donor_age":"41","chip_protocol_bead_type":"Protein A-Sepharose 4B","chip_antibody":"H3K4Me1","chip_protocol_chromatin_amount":"10 million cells","extraction_protocol":"SDS lysis","chip_protocol_antibody_amount":"2-15 ug","chip_protocol_bead_amount":"70 ul bed volume","chip_protocol":"Bernstein_BROAD_ENCODE_protocol","extraction_protocol_sonication_cycles":"1","chip_antibody_catalog":"ab8895","chip_antibody_provider":"Abcam","chip_antibody_lot":"659352","experiment_type":"Histone H3K4me1","extraction_protocol_type_of_sonicator":"Bioruptor","original_filename":"GSM772745_BI.Mesenchymal_Stem_Cell_Derived_Adipocyte_Cultured_Cells.H3K4me1.93"},"geolst":["GSM772745"]},{"type":"bigWig","name":"E056 H3K4me1 of Penis Foreskin Fibroblast Primary Cells","url":"http://egg.wustl.edu/d/hg19/GSM817234.bigWig","public":true,"mode":1,"qtc":{"anglescale":1,"pr":238,"pg":236,"pb":51,"nr":255,"ng":0,"nb":0,"pth":"rgb(238,236,51)","nth":"#800000","thtype":2,"thmin":0,"thmax":10,"thpercentile":98,"height":5,"summeth":1,"smooth":7},"annotation":["13144","22010","30014","40051","60001","70009"],"custom_annotation":["8","bigWig"],"details":{"sample_alias":"Penis, Foreskin, Fibroblast skin01","sample_common_name":"Penis, Foreskin, Fibroblast Primary Cells","molecule":"genomic DNA","disease":"None","biomaterial_provider":"SFVAMC Dermatology","biomaterial_type":"Primary Cell Culture","cell_type":"Fibroblast","markers":"NA","culture_conditions":"Invitrogen 154CF + HKGS + .07mM Ca","donor_id":"skin01","donor_age":"Neonate","donor_health_status":"Disease Free","donor_sex":"Male","donor_ethnicity":"NA","passage_if_expanded":"2","karyotype":"46, XY","parity":"NA","experiment_type":"Histone H3K4me1","extraction_protocol":"BCCAGSC ChIP Standard Operating Procedure","extraction_protocol_type_of_sonicator":"Fisher 550 Sonic Dismembrator","extraction_protocol_sonication_cycles":"15min","chip_protocol":"BCCAGSC ChIP Standard Operating Procedure","chip_protocol_chromatin_amount":"20ug","chip_protocol_bead_type":"Sepharose A/G beads","chip_protocol_bead_amount":"20ul","chip_protocol_antibody_amount":"5ug","size_fraction":"101-291bp","chip_antibody":"H3K4me1","chip_antibody_provider":"diagenode","chip_antibody_catalog":"pAb037050","chip_antibody_lot":"A399002341P"},"geolst":["GSM817234"]},{"type":"bigWig","name":"E056 H3K4me1 of Penis Foreskin Fibroblast Primary Cells","url":"http://egg.wustl.edu/d/hg19/GSM941717.bigWig","public":true,"mode":1,"qtc":{"anglescale":1,"pr":238,"pg":236,"pb":51,"nr":255,"ng":0,"nb":0,"pth":"rgb(238,236,51)","nth":"#800000","thtype":2,"thmin":0,"thmax":10,"thpercentile":98,"height":5,"summeth":1,"smooth":7},"annotation":["13144","22010","30014","40124","60001","70009"],"custom_annotation":["8","bigWig"],"details":{"sample_alias":"Penis, Foreskin, Fibroblast skin02","sample_common_name":"Penis, Foreskin, Fibroblast Primary Cells","molecule":"genomic DNA","disease":"None","biomaterial_provider":"SFVAMC Dermatology","biomaterial_type":"Primary Cell Culture","cell_type":"Fibroblast","markers":"NA","culture_conditions":"Invitrogen 106 + LSGS","donor_id":"skin02","donor_age":"Neonate","donor_health_status":"Disease Free","donor_sex":"Male","donor_ethnicity":"NA","passage_if_expanded":"4","karyotype":"46, XY","parity":"NA","experiment_type":"Histone H3K4me1","extraction_protocol":"BCCAGSC ChIP Standard Operating Procedure","extraction_protocol_type_of_sonicator":"Fisher 550 Sonic Dismembrator","extraction_protocol_sonication_cycles":"10min","chip_protocol":"BCCAGSC ChIP Standard Operating Procedure","chip_protocol_chromatin_amount":"20ug","chip_protocol_bead_type":"Sepharose A/G beads","chip_protocol_bead_amount":"20ul","chip_protocol_antibody_amount":"5ug","size_fraction":"111-361bp","chip_antibody":"H3K4me1","chip_antibody_provider":"diagenode","chip_antibody_catalog":"pAb037050","chip_antibody_lot":"A399002341P"},"geolst":["GSM941717"]},{"type":"bigWig","name":"E056 H3K4me1 Penis  Foreskin  Fibroblast skin03","url":"http://egg.wustl.edu/d/hg19/GSM958164_1.bigWig","public":true,"mode":1,"qtc":{"anglescale":1,"pr":238,"pg":236,"pb":51,"nr":255,"ng":0,"nb":0,"pth":"rgb(238,236,51)","nth":"#800000","thtype":2,"thmin":0,"thmax":10,"thpercentile":98,"height":5,"summeth":1,"smooth":7},"annotation":["13144","22010","30014","40226","60001","70009"],"custom_annotation":["8","bigWig"],"details":{"sample alias":"Penis, Foreskin, Fibroblast skin03","sample common name":"Penis, Foreskin, Fibroblast Primary Cells","molecule":"genomic DNA","disease":"None","biomaterial_provider":"SFVAMC Dermatology","biomaterial_type":"Primary Cell Culture","cell_type":"Fibroblast","markers":"NA","culture_conditions":"Invitrogen 106 + LSGS","donor_id":"skin03","donor_age":"Neonate","donor_health_status":"Disease Free","donor_sex":"Male","donor_ethnicity":"NA","passage_if_expanded":"2","karyotype":"46, XY","parity":"NA","experiment_type":"Histone H3K4me1","extraction_protocol":"BCCAGSC ChIP Standard Operating Procedure","extraction_protocol_type_of_sonicator":"Fisher 550 Sonic Dismembrator","extraction_protocol_sonication_cycles":"10 min","chip_protocol":"BCCAGSC ChIP Standard Operating Procedure","chip_protocol_chromatin_amount":"5 ug","chip_protocol_bead_type":"Sepharose A/G beads","chip_protocol_bead_amount":"20 ul","chip_protocol_antibody_amount":"5 ug","size_fraction":"111-411 bp","chip_antibody":"H3K4me1","chip_antibody_provider":"Diagenode","chip_antibody_catalog":"pAb-037-050","chip_antibody_lot":"A399-002341P","original_filename":"UCSF-UBC.Penis_Foreskin_Fibroblast_Primary_Cells.H3K4me1.skin03.bigWig"},"geolst":["GSM958164"]},{"type":"bigWig","name":"E061 H3K4me1 of Penis Foreskin Melanocyte Primary Cells","url":"http://egg.wustl.edu/d/hg19/GSM941730.bigWig","public":true,"mode":1,"qtc":{"anglescale":1,"pr":238,"pg":236,"pb":51,"nr":255,"ng":0,"nb":0,"pth":"rgb(238,236,51)","nth":"#800000","thtype":2,"thmin":0,"thmax":10,"thpercentile":98,"height":5,"summeth":1,"smooth":7},"annotation":["13145","22010","30014","40124","60001","70009"],"custom_annotation":["8","bigWig"],"details":{"sample_alias":"Penis, Foreskin, Melanocyte skin02","sample_common_name":"Penis, Foreskin, Melanocyte Primary Cells","molecule":"genomic DNA","disease":"None","biomaterial_provider":"SFVAMC Dermatology","biomaterial_type":"Primary Cell Culture","cell_type":"Melanocyte","markers":"NA","culture_conditions":"Invitrogen 254 + HMGS","donor_id":"skin02","donor_age":"Neonate","donor_health_status":"Disease Free","donor_sex":"Male","donor_ethnicity":"NA","passage_if_expanded":"4","karyotype":"46, XY","parity":"NA","experiment_type":"Histone H3K4me1","extraction_protocol":"BCCAGSC ChIP Standard Operating Procedure","extraction_protocol_type_of_sonicator":"Fisher 550 Sonic Dismembrator","extraction_protocol_sonication_cycles":"10min","chip_protocol":"BCCAGSC ChIP Standard Operating Procedure","chip_protocol_chromatin_amount":"20ug","chip_protocol_bead_type":"Sepharose A/G beads","chip_protocol_bead_amount":"20ul","chip_protocol_antibody_amount":"5ug","size_fraction":"106-362bp","chip_antibody":"H3K4me1","chip_antibody_provider":"diagenode","chip_antibody_catalog":"pAb037050","chip_antibody_lot":"A399002341P"},"geolst":["GSM941730"]},{"type":"bigWig","name":"E061 H3K4me1 of Penis Foreskin Melanocyte Primary Cells","url":"http://egg.wustl.edu/d/hg19/GSM941728.bigWig","public":true,"mode":1,"qtc":{"anglescale":1,"pr":238,"pg":236,"pb":51,"nr":255,"ng":0,"nb":0,"pth":"rgb(238,236,51)","nth":"#800000","thtype":2,"thmin":0,"thmax":10,"thpercentile":98,"height":5,"summeth":1,"smooth":7},"annotation":["13145","22010","30014","40051","60001","70009"],"custom_annotation":["8","bigWig"],"details":{"sample_alias":"Penis, Foreskin, Melanocyte skin01","sample_common_name":"Penis, Foreskin, Melanocyte Primary Cells","molecule":"genomic DNA","disease":"None","biomaterial_provider":"SFVAMC Dermatology","biomaterial_type":"Primary Cell Culture","cell_type":"Melanocyte","markers":"NA","culture_conditions":"Invitrogen 154CF + HKGS + .07mM Ca","donor_id":"skin01","donor_age":"Neonate","donor_health_status":"Disease Free","donor_sex":"Male","donor_ethnicity":"NA","passage_if_expanded":"2","karyotype":"46, XY","parity":"NA","experiment_type":"Histone H3K4me1","extraction_protocol":"BCCAGSC ChIP Standard Operating Procedure","extraction_protocol_type_of_sonicator":"Fisher 550 Sonic Dismembrator","extraction_protocol_sonication_cycles":"10min","chip_protocol":"BCCAGSC ChIP Standard Operating Procedure","chip_protocol_chromatin_amount":"10ug","chip_protocol_bead_type":"Sepharose A/G beads","chip_protocol_bead_amount":"20ul","chip_protocol_antibody_amount":"5ug","size_fraction":"85-365bp","chip_antibody":"H3K4me1","chip_antibody_provider":"diagenode","chip_antibody_catalog":"pAb037050","chip_antibody_lot":"A399002341P"},"geolst":["GSM941728"]},{"type":"bigWig","name":"E061 H3K4me1 Penis  Foreskin  Melanocyte skin03","url":"http://egg.wustl.edu/d/hg19/GSM958152_1.bigWig","public":true,"mode":1,"qtc":{"anglescale":1,"pr":238,"pg":236,"pb":51,"nr":255,"ng":0,"nb":0,"pth":"rgb(238,236,51)","nth":"#800000","thtype":2,"thmin":0,"thmax":10,"thpercentile":98,"height":5,"summeth":1,"smooth":7},"annotation":["13145","22010","30014","40226","60001","70009"],"custom_annotation":["8","bigWig"],"details":{"sample alias":"Penis, Foreskin, Melanocyte skin03","sample common name":"Penis, Foreskin, Melanocyte Primary Cells","molecule":"genomic DNA","disease":"None","biomaterial_provider":"SFVAMC Dermatology","biomaterial_type":"Primary Cell Culture","cell_type":"Melanocyte","markers":"NA","culture_conditions":"Invitrogen 254 + HMGS","donor_id":"skin03","donor_age":"Neonate","donor_health_status":"Disease Free","donor_sex":"Male","donor_ethnicity":"NA","passage_if_expanded":"2","karyotype":"46, XY","parity":"NA","experiment_type":"Histone H3K4me1","extraction_protocol":"BCCAGSC ChIP Standard Operating Procedure","extraction_protocol_type_of_sonicator":"Fisher 550 Sonic Dismembrator","extraction_protocol_sonication_cycles":"10 min","chip_protocol":"BCCAGSC ChIP Standard Operating Procedure","chip_protocol_chromatin_amount":"10 ug","chip_protocol_bead_type":"Sepharose A/G beads","chip_protocol_bead_amount":"20 ul","chip_protocol_antibody_amount":"5 ug","size_fraction":"97-408 bp","chip_antibody":"H3K4me1","chip_antibody_provider":"Diagenode","chip_antibody_catalog":"pAb-037-050","chip_antibody_lot":"A399-002341P","original_filename":"UCSF-UBC.Penis_Foreskin_Melanocyte_Primary_Cells.H3K4me1.skin03.bigWig"},"geolst":["GSM958152"]},{"type":"bigWig","name":"E058 H3K4me1 of Penis  Foreskin  Keratinocyte Primary Cells","url":"http://egg.wustl.edu/d/hg19/GSM669591.bigWig","public":true,"mode":1,"qtc":{"anglescale":1,"pr":238,"pg":236,"pb":51,"nr":255,"ng":0,"nb":0,"pth":"rgb(238,236,51)","nth":"#800000","thtype":2,"thmin":0,"thmax":10,"thpercentile":98,"height":5,"summeth":1,"smooth":7},"annotation":["13035","22010","30014","40051","60001","70009"],"custom_annotation":["8","bigWig"],"details":{"sample_alias":"Penis, Foreskin, Keratinocyte skin01"," sample_common_name":"Penis, Foreskin, Keratinocyte Primary Cells","disease":"None","biomaterial_provider":"SFVAMC Dermatology","biomaterial_type":"Primary Cell Culture","cell_type":"Keratinocyte","markers":"NA","culture_conditions":"Invitrogen 154CF + HKGS + .07mM Ca","donor_id":"skin01","donor_age":"Neonate","donor_health_status":"Disease Free","donor_sex":"Male","donor_ethnicity":"NA","passage_if_expanded":"2","karyotype":"46, XY","parity":"NA","experiment_type":"Histone H3K4me1","extraction_protocol":"Farnham Lab Protocol","extraction_protocol_type_of_sonicator":"Bioruptor","extraction_protocol_sonication_cycles":"20min","chip_protocol":"Farnham Lab Protocol","chip_protocol_chromatin_amount":"5ug","chip_protocol_bead_type":"Protein A/G magnetic","chip_protocol_bead_amount":"30ul","chip_protocol_antibody_amount":"2.1ug","size_fraction":"146-420bp","chip_antibody":"H3K4me1","chip_antibody_provider":"Diagenode","chip_antibody_catalog":"pAB-037-050","chip_antibody_lot":"A399-002341P","original_filename":"GSM669591_UCSF-UBC.Penis_Foreskin_Keratinocyte_Primary_Cells.H3K4me1.skin01.bigWig","Embargo end date":"2011-12-31"},"geolst":["GSM669591"]},{"type":"bigWig","name":"E058 H3K4me1 of Penis Foreskin Keratinocyte Primary Cells","url":"http://egg.wustl.edu/d/hg19/GSM941736.bigWig","public":true,"mode":1,"qtc":{"anglescale":1,"pr":238,"pg":236,"pb":51,"nr":255,"ng":0,"nb":0,"pth":"rgb(238,236,51)","nth":"#800000","thtype":2,"thmin":0,"thmax":10,"thpercentile":98,"height":5,"summeth":1,"smooth":7},"annotation":["13035","22010","30014","40124","60001","70009"],"custom_annotation":["8","bigWig"],"details":{"sample_alias":"Penis, Foreskin, Keratinocyte skin02","sample_common_name":"Penis, Foreskin, Keratinocyte Primary Cells","molecule":"genomic DNA","disease":"None","biomaterial_provider":"SFVAMC Dermatology","biomaterial_type":"Primary Cell Culture","cell_type":"Keratinocyte","markers":"NA","culture_conditions":"Invitrogen 154CF + HKGS + .07mM Ca","donor_id":"skin02","donor_age":"Neonate","donor_health_status":"Disease Free","donor_sex":"Male","donor_ethnicity":"NA","passage_if_expanded":"2","karyotype":"46, XY","parity":"NA","experiment_type":"Histone H3K4me1","extraction_protocol":"BCCAGSC ChIP Standard Operating Procedure","extraction_protocol_type_of_sonicator":"Fisher 550 Sonic Dismembrator","extraction_protocol_sonication_cycles":"10min","chip_protocol":"BCCAGSC ChIP Standard Operating Procedure","chip_protocol_chromatin_amount":"10ug","chip_protocol_bead_type":"Sepharose A/G beads","chip_protocol_bead_amount":"20ul","chip_protocol_antibody_amount":"5ug","size_fraction":"100-348bp","chip_antibody":"H3K4me1","chip_antibody_provider":"diagenode","chip_antibody_catalog":"pAb037050","chip_antibody_lot":"A399002341P"},"geolst":["GSM941736"]},{"type":"bigWig","name":"E058 H3K4me1 Penis  Foreskin  Keratinocyte skin03","url":"http://egg.wustl.edu/d/hg19/GSM958161_1.bigWig","public":true,"mode":1,"qtc":{"anglescale":1,"pr":238,"pg":236,"pb":51,"nr":255,"ng":0,"nb":0,"pth":"rgb(238,236,51)","nth":"#800000","thtype":2,"thmin":0,"thmax":10,"thpercentile":98,"height":5,"summeth":1,"smooth":7},"annotation":["13035","22010","30014","40226","60001","70009"],"custom_annotation":["8","bigWig"],"details":{"sample alias":"Penis, Foreskin, Keratinocyte skin03","sample common name":"Penis, Foreskin, Keratinocyte Primary Cells","molecule":"genomic DNA","disease":"None","biomaterial_provider":"SFVAMC Dermatology","biomaterial_type":"Primary Cell Culture","cell_type":"Keratinocyte","markers":"NA","culture_conditions":"Invitrogen 154CF + HKGS + .07mM Ca","donor_id":"skin03","donor_age":"Neonate","donor_health_status":"Disease Free","donor_sex":"Male","donor_ethnicity":"NA","passage_if_expanded":"2","karyotype":"46, XY","parity":"NA","experiment_type":"Histone H3K4me1","extraction_protocol":"BCCAGSC ChIP Standard Operating Procedure","extraction_protocol_type_of_sonicator":"Fisher 550 Sonic Dismembrator","extraction_protocol_sonication_cycles":"20 min","chip_protocol":"BCCAGSC ChIP Standard Operating Procedure","chip_protocol_chromatin_amount":"5 ug","chip_protocol_bead_type":"Sepharose A/G beads","chip_protocol_bead_amount":"20 ul","chip_protocol_antibody_amount":"5 ug","size_fraction":"134-471 bp","chip_antibody":"H3K4me1","chip_antibody_provider":"Diagenode","chip_antibody_catalog":"pAb-037-050","chip_antibody_lot":"A399-002341P","original_filename":"UCSF-UBC.Penis_Foreskin_Keratinocyte_Primary_Cells.H3K4me1.skin03.bigWig"},"geolst":["GSM958161"]},{"type":"bigWig","name":"E028 H3K4me1 of breast vHMEC","url":"http://egg.wustl.edu/d/hg19/GSM613868.bigWig","public":true,"mode":1,"qtc":{"anglescale":1,"pr":238,"pg":236,"pb":51,"nr":255,"ng":0,"nb":0,"pth":"rgb(238,236,51)","nth":"#800000","thtype":2,"thmin":0,"thmax":10,"thpercentile":98,"height":5,"summeth":1,"smooth":7},"annotation":["13007","22010","30014","40015","60002","70004"],"custom_annotation":["8","bigWig"],"details":{"molecule":"genomic DNA"," disease":"None","biomaterial_provider":"Tlsty Lab, University of California, San Francisco","biomaterial_type":"Primary Cell Culture","cell_type":"Variant Human Mammary Epithelial Cells","markers":"NA","culture_conditions":"spilt 1:5 in MEGM medium (Lonza Inc.)","donor_id":"RM035","donor_age":"18","donor_health_status":"Disease Free","donor_sex":"Female","donor_ethnicity":"Caucasian","passage_if_expanded":"8","karyotype":"46,XX,1dmin","parity":"N/A","experiment_type":"Histone H3K4me1","extraction_protocol":"Farnham Lab Protocol","extraction_protocol_type_of_sonicator":"Bioruptor","extraction_protocol_sonication_cycles":"25min","chip_protocol":"Farnham Lab Protocol","chip_protocol_chromatin_amount":"1ug","chip_protocol_bead_type":"Protein G Mag Beads","chip_protocol_bead_amount":"15ul","chip_protocol_antibody_amount":"2ug","size_fraction":"47-347bp","chip_antibody":"H3K4me1","chip_antibody_provider":"Diagenode","chip_antibody_catalog":"pAb-037-050","chip_antibody_lot":"A399-0011","original_filename":"GSM613868_UCSF-UBC.Breast_vHMEC.H3K4me1.RM035.HS1994.bigWig","Embargo end date":"2011-08-11"},"geolst":["GSM613868"]},{"type":"bigWig","name":"E028 H3K4me1 of breast vHMEC","url":"http://egg.wustl.edu/d/hg19/GSM613876.bigWig","public":true,"mode":1,"qtc":{"anglescale":1,"pr":238,"pg":236,"pb":51,"nr":255,"ng":0,"nb":0,"pth":"rgb(238,236,51)","nth":"#800000","thtype":2,"thmin":0,"thmax":10,"thpercentile":98,"height":5,"summeth":1,"smooth":7},"annotation":["13007","22010","30014","40015","60002","70004"],"custom_annotation":["8","bigWig"],"details":{"molecule":"genomic DNA"," disease":"None","biomaterial_provider":"Tlsty Lab, University of California, San Francisco","biomaterial_type":"Primary Cell Culture","cell_type":"Variant Human Mammary Epithelial Cells","markers":"NA","culture_conditions":"spilt 1:5 in MEGM medium (Lonza Inc.)","donor_id":"RM035","donor_age":"18","donor_health_status":"Disease Free","donor_sex":"Female","donor_ethnicity":"Caucasian","passage_if_expanded":"8","karyotype":"46,XX,1dmin","parity":"N/A","experiment_type":"Histone H3K4me1","extraction_protocol":"Farnham Lab Protocol","extraction_protocol_type_of_sonicator":"Bioruptor","extraction_protocol_sonication_cycles":"30min","chip_protocol":"Farnham Lab Protocol","chip_protocol_chromatin_amount":"3ug","chip_protocol_bead_type":"Protein G Mag Beads","chip_protocol_bead_amount":"15ul","chip_protocol_antibody_amount":"2ug","size_fraction":"37-279bp","chip_antibody":"H3K4me1","chip_antibody_provider":"Diagenode","chip_antibody_catalog":"pAb-037-050","chip_antibody_lot":"A399-0011","original_filename":"GSM613876_UCSF-UBC.Breast_vHMEC.H3K4me1.RM035.HS2618.bigWig","Embargo end date":"2011-08-11"},"geolst":["GSM613876"]},{"type":"bigWig","name":"E027 H3K4me1 of breast myoepithelial cells","url":"http://egg.wustl.edu/d/hg19/GSM613870.bigWig","public":true,"mode":1,"qtc":{"anglescale":1,"pr":238,"pg":236,"pb":51,"nr":255,"ng":0,"nb":0,"pth":"rgb(238,236,51)","nth":"#800000","thtype":2,"thmin":0,"thmax":10,"thpercentile":98,"height":5,"summeth":1,"smooth":7},"annotation":["13005","22010","30014","40014","60002","70002"],"custom_annotation":["8","bigWig"],"details":{"molecule":"genomic DNA"," disease":"None","biomaterial_provider":"Thea Tlsty Lab UCSF","biomaterial_type":"Primary Cell","cell_type":"myo epithelial cell","markers":"CD10+","donor_id":"RM066","donor_age":"36","donor_health_status":"Disease Free","donor_sex":"Female","donor_ethnicity":"African American","passage_if_expanded":"n/a","karyotype":"46, XX","parity":"NA","experiment_type":"Histone H3K4me1","extraction_protocol":"BCCAGSC ChIP Standard Operating Procedure","extraction_protocol_type_of_sonicator":"Fisher 550 Sonic Dismembrator","extraction_protocol_sonication_cycles":"10min","chip_protocol":"BCCAGSC ChIP Standard Operating Procedure","chip_protocol_chromatin_amount":"2ug","chip_protocol_bead_type":"Sepharose G/A beads","chip_protocol_bead_amount":"20ul","chip_protocol_antibody_amount":"3.75ug","size_fraction":"NA","chip_antibody":"H3K4me1","chip_antibody_provider":"Diagenode","chip_antibody_catalog":"pAb-037-050","chip_antibody_lot":"A399-011","original_filename":"GSM613870_UCSF-UBC.Breast_Myoepithelial_Cells.H3K4me1.RM066.bigWig","Embargo end date":"2011-08-11"},"geolst":["GSM613870"]},{"type":"bigWig","name":"E027 H3K4me1 of breast myoepithelial cells","url":"http://egg.wustl.edu/d/hg19/GSM613885.bigWig","public":true,"mode":1,"qtc":{"anglescale":1,"pr":238,"pg":236,"pb":51,"nr":255,"ng":0,"nb":0,"pth":"rgb(238,236,51)","nth":"#800000","thtype":2,"thmin":0,"thmax":10,"thpercentile":98,"height":5,"summeth":1,"smooth":7},"annotation":["13005","22010","30014","40013","60002","70002"],"custom_annotation":["8","bigWig"],"details":{"molecule":"genomic DNA"," disease":"None","biomaterial_provider":"Thea Tlsty Lab UCSF","biomaterial_type":"Primary Cell","cell_type":"myo epithelial cell","markers":"CD10+","donor_id":"RM080","donor_age":"33","donor_health_status":"Disease Free","donor_sex":"Female","donor_ethnicity":"African-American","passage_if_expanded":"NA","karyotype":"46, XX","parity":"2","location":"Left","experiment_type":"Histone H3K4me1","extraction_protocol":"BCCAGSC ChIP Standard Operating Procedure","extraction_protocol_type_of_sonicator":"Fisher 550 Sonic Dismembrator","extraction_protocol_sonication_cycles":"10min","chip_protocol":"BCCAGSC ChIP Standard Operating Procedure","chip_protocol_chromatin_amount":"3.5ug","chip_protocol_bead_type":"Sepharose A/G beads","chip_protocol_bead_amount":"20ul","chip_protocol_antibody_amount":"3.75ug","size_fraction":"59-295bp","chip_antibody":"H3K4me1","chip_antibody_provider":"diagenode","chip_antibody_catalog":"pAb037050","chip_antibody_lot":"A3990011","original_filename":"GSM613885_UCSF-UBC.Breast_Myoepithelial_Cells.H3K4me1.RM080.bigWig","Embargo end date":"2011-08-11"},"geolst":["GSM613885"]},{"type":"bigWig","name":"E054 H3K4me1 of Neurospheres  Ganglionic Eminence Derived HuFNSC02","url":"http://egg.wustl.edu/d/hg19/GSM707008_0.bigWig","public":true,"mode":1,"qtc":{"anglescale":1,"pr":238,"pg":236,"pb":51,"nr":255,"ng":0,"nb":0,"pth":"rgb(238,236,51)","nth":"#800000","thtype":2,"thmin":0,"thmax":10,"thpercentile":98,"height":5,"summeth":1,"smooth":7},"annotation":["13031","22010","30014","40116","60002","70009"],"custom_annotation":["14","bigWig"],"details":{"sample_alias":"Neurospheres, Ganglionic Eminence Derived HuFNSC02","sample_common_name":"Neurosphere Cultured Cells, Ganglionic Eminence Derived","molecule":"genomic DNA","disease":"None","biomaterial_provider":"Keith Ligon, Harvard","biomaterial_type":"Primary Cell Culture","cell_type":"Neurospheres, Ganglionic Eminence Derived","markers":"NA","culture_conditions":"Neurocult+EGF+FGF","donor_id":"HuFNSC02","donor_age":"17GW","donor_health_status":"Disease Free","donor_sex":"Female","donor_ethnicity":"NA","passage_if_expanded":"3","karyotype":"","parity":"NA","note":"Twin of HuFNSC01","experiment_type":"Histone H3K4me1","extraction_protocol":"BCCAGSC ChIP Standard Operating Procedure","extraction_protocol_type_of_sonicator":"Fisher 550 Sonic Dismembrator","extraction_protocol_sonication_cycles":"10min","chip_protocol":"BCCAGSC ChIP Standard Operating Procedure","chip_protocol_chromatin_amount":"5ug","chip_protocol_bead_type":"Sepharose A/G beads","chip_protocol_bead_amount":"20ul","chip_protocol_antibody_amount":"5ug","size_fraction":"100-404bp","chip_antibody":"H3K4me1","chip_antibody_provider":"Diagenode","chip_antibody_catalog":"pAb037050","chip_antibody_lot":"A399002341P","original_filename":"GSM707008_UCSF-UBC.Neurosphere_Cultured_Cells_Ganglionic_Eminence_Derived.H3K4me1.HuFNSC02.bigWig"},"geolst":["GSM707008"]},{"type":"bigWig","name":"E054 H3K4me1 of Neurospheres  Ganglionic Eminence Derived HuFNSC01","url":"http://egg.wustl.edu/d/hg19/GSM817232.bigWig","public":true,"mode":1,"qtc":{"anglescale":1,"pr":238,"pg":236,"pb":51,"nr":255,"ng":0,"nb":0,"pth":"rgb(238,236,51)","nth":"#800000","thtype":2,"thmin":0,"thmax":10,"thpercentile":98,"height":5,"summeth":1,"smooth":7},"annotation":["13031","22010","30014","40115","60002","70009"],"custom_annotation":["14","bigWig"],"details":{"sample_alias":"Neurospheres, Ganglionic Eminence Derived HuFNSC01","sample_common_name":"Neurosphere Cultured Cells, Ganglionic Eminence Derived","molecule":"genomic DNA","disease":"None","biomaterial_provider":"Keith Ligon, Harvard","biomaterial_type":"Primary Cell Culture","cell_type":"Neurospheres, Ganglionic Eminence Derived","markers":"NA","culture_conditions":"Neurocult+EGF+FGF","donor_id":"HuFNSC01","donor_age":"17GW","donor_health_status":"Disease Free","donor_sex":"Female","donor_ethnicity":"NA","passage_if_expanded":"3","karyotype":"","parity":"NA","note":"Twin of HuFNSC02","experiment_type":"Histone H3K4me1","extraction_protocol":"BCCAGSC ChIP Standard Operating Procedure","extraction_protocol_type_of_sonicator":"Fisher 550 Sonic Dismembrator","extraction_protocol_sonication_cycles":"10min","chip_protocol":"BCCAGSC ChIP Standard Operating Procedure","chip_protocol_chromatin_amount":"5ug","chip_protocol_bead_type":"sepharose A and G beads","chip_protocol_bead_amount":"20ul","chip_protocol_antibody_amount":"3.75ug","size_fraction":"116-326bp","chip_antibody":"H3K4me1","chip_antibody_provider":"Diagenode","chip_antibody_catalog":"pAb-037-050","chip_antibody_lot":"A399-0011"},"geolst":["GSM817232"]},{"type":"bigWig","name":"E053 H3K4me1 Neurospheres","url":"http://egg.wustl.edu/d/hg19/GSM707003.bigWig","public":true,"mode":1,"qtc":{"anglescale":1,"pr":238,"pg":236,"pb":51,"nr":255,"ng":0,"nb":0,"pth":"rgb(238,236,51)","nth":"#800000","thtype":2,"thmin":0,"thmax":10,"thpercentile":98,"height":5,"summeth":1,"smooth":7},"annotation":["13033","22010","30014","40116","60002","70009"],"custom_annotation":["14","bigWig"],"details":{"sample_alias":"Neurospheres, Cortex Derived HuFNSC02","sample_common_name":"Neurosphere Cultured Cells, Cortex Derived","molecule":"genomic DNA","disease":"None","biomaterial_provider":"Keith Ligon, Harvard","biomaterial_type":"Primary Cell Culture","cell_type":"Neurospheres, Cortex Derived","markers":"NA","culture_conditions":"Neurocult+EGF+FGF","donor_id":"HuFNSC02","donor_age":"17GW","donor_health_status":"Disease Free","donor_sex":"Female","donor_ethnicity":"NA","passage_if_expanded":"2","karyotype":"","parity":"NA","note":"Twin of HuFNSC01","experiment_type":"Histone H3K4me1","extraction_protocol":"BCCAGSC ChIP Standard Operating Procedure","extraction_protocol_type_of_sonicator":"Fisher 550 Sonic Dismembrator","extraction_protocol_sonication_cycles":"10min","chip_protocol":"BCCAGSC ChIP Standard Operating Procedure","chip_protocol_chromatin_amount":"5ug","chip_protocol_bead_type":"sepharose A and G beads","chip_protocol_bead_amount":"20ul","chip_protocol_antibody_amount":"3.75ug","size_fraction":"96-362bp","chip_antibody":"H3K4me1","chip_antibody_provider":"Diagenode","chip_antibody_catalog":"pAb-037-050,9751S","chip_antibody_lot":"A399-0011","original_filename":"GSM707003_UCSF-UBC.Neurosphere_Cultured_Cells_Cortex_Derived.H3K4me1.HuFNSC02.bigWig"},"geolst":["GSM707003"]},{"type":"bigWig","name":"E053 H3K4me1 of Neurospheres  Cortex Derived HuFNSC01","url":"http://egg.wustl.edu/d/hg19/GSM817230.bigWig","public":true,"mode":1,"qtc":{"anglescale":1,"pr":238,"pg":236,"pb":51,"nr":255,"ng":0,"nb":0,"pth":"rgb(238,236,51)","nth":"#800000","thtype":2,"thmin":0,"thmax":10,"thpercentile":98,"height":5,"summeth":1,"smooth":7},"annotation":["13033","22010","30014","40115","60002","70009"],"custom_annotation":["14","bigWig"],"details":{"sample_alias":"Neurospheres, Cortex Derived HuFNSC01","sample_common_name":"Neurosphere Cultured Cells, Cortex Derived","molecule":"genomic DNA","disease":"None","biomaterial_provider":"Keith Ligon, Harvard","biomaterial_type":"Primary Cell Culture","cell_type":"Neurospheres, Cortex Derived","markers":"NA","culture_conditions":"Neurocult+EGF+FGF","donor_id":"HuFNSC01","donor_age":"17GW","donor_health_status":"Disease Free","donor_sex":"Female","donor_ethnicity":"NA","passage_if_expanded":"2","karyotype":"","parity":"NA","note":"Twin of HuFNSC02","experiment_type":"Histone H3K4me1","extraction_protocol":"BCCAGSC ChIP Standard Operating Procedure","extraction_protocol_type_of_sonicator":"Fisher 550 Sonic Dismembrator","extraction_protocol_sonication_cycles":"10min","chip_protocol":"BCCAGSC ChIP Standard Operating Procedure","chip_protocol_chromatin_amount":"5ug","chip_protocol_bead_type":"Sepharose A/G beads","chip_protocol_bead_amount":"20ul","chip_protocol_antibody_amount":"3.75ug","size_fraction":"91-311bp","chip_antibody":"H3K4me1","chip_antibody_provider":"Diagenode","chip_antibody_catalog":"pAb-037-050","chip_antibody_lot":"A399-0011"},"geolst":["GSM817230"]},{"type":"bedGraph","name":"E112 ChIP-Seq Analysis of H3K4me1 in Human Thymus Tissue","url":"http://egg.wustl.edu/d/hg19/GSM1059446_1.gz","public":true,"mode":1,"qtc":{"anglescale":1,"pr":238,"pg":236,"pb":51,"nr":255,"ng":0,"nb":0,"pth":"rgb(238,236,51)","nth":"#800000","thtype":2,"thmin":0,"thmax":10,"thpercentile":98,"height":5,"summeth":1,"smooth":7},"annotation":["13303","22010","30002","40272"],"custom_annotation":["18","bedGraph"],"details":{"sample alias":"STL001TH-01","sample common name":"Thymus","molecule":"genomic DNA","disease":"None","biomaterial_provider":"Shin Lin, Stanford University","biomaterial_type":"Primary Tissue","tissue_type":"Thymus","tissue_depot":"N/A","collection_method":"Autopsy","donor_id":"STL001","donor_age":"3","donor_health_status":"healthy, no prior medical history (NO diabetes, hypertension, coronary artery disease, cancer)","donor_sex":"Male","donor_ethnicity":"Caucasian and African American","experiment_type":"Histone H3K4me1","extraction_protocol":"See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf","extraction_protocol_type_of_sonicator":"Biorupter","extraction_protocol_sonication_cycles":"80","chip_protocol":"See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf","chip_protocol_chromatin_amount":"500 micrograms","chip_protocol_bead_type":"magnetic anti-rabbit","chip_protocol_bead_amount":"33,500,000","chip_protocol_antibody_amount":"5 micrograms","chip_antibody":"H3K4me1","chip_antibody_provider":"Abcam","chip_antibody_catalog":"AB8895","chip_antibody_lot":"720417","original_filename":"GSM1059446_UCSD.Thymus.H3K4me1.STL001.wig"},"geolst":["GSM1059446"]},{"type":"bigWig","name":"E071 H3K4me1 of Brain  Hippocampus Middle","url":"http://egg.wustl.edu/d/hg19/GSM669962.bigWig","public":true,"mode":1,"qtc":{"anglescale":1,"pr":238,"pg":236,"pb":51,"nr":255,"ng":0,"nb":0,"pth":"rgb(238,236,51)","nth":"#800000","thtype":2,"thmin":0,"thmax":10,"thpercentile":98,"height":5,"summeth":1,"smooth":7},"annotation":["13042","22010","30003","40011","60002","70009"],"custom_annotation":["3","bigWig"],"details":{"sample_alias":"172"," sample_common_name":"Brain, Hippocampus Middle","collection_method":"post-mortem","donor_health_status":"NA","molecule":"genomic DNA","disease":"none","tissue_type":"Hippocampus Middle","passage_if_expanded":"NA","donor_ethnicity":"NA","donor_sex":"Female","biomaterial_type":"Primary Tissue","tissue_depot":"brain","donor_id":"112","biomaterial_provider":"Rush University Medical Center","donor_age":"75","chip_protocol_bead_type":"Protein A-Sepharose 4B","chip_antibody":"H3K4Me1","chip_protocol_chromatin_amount":"10 million cells","extraction_protocol":"SDS lysis","chip_protocol_antibody_amount":"2-15 ug","chip_protocol_bead_amount":"70 ul bed volume","chip_protocol":"Bernstein_BROAD_ENCODE_protocol","extraction_protocol_sonication_cycles":"1","chip_antibody_catalog":"ab8895","chip_antibody_provider":"Abcam","chip_antibody_lot":"151304","experiment_type":"Histone H3K4me1","extraction_protocol_type_of_sonicator":"Bioruptor","original_filename":"GSM669962_BI.Brain_Hippocampus_Middle.H3K4me1.112.bigWig","Embargo end date":"2011-12-31"},"geolst":["GSM669962"]},{"type":"bigWig","name":"E071 H3K4me1 of Brain  Hippocampus Middle","url":"http://egg.wustl.edu/d/hg19/GSM773021_0.bigWig","public":true,"mode":1,"qtc":{"anglescale":1,"pr":238,"pg":236,"pb":51,"nr":255,"ng":0,"nb":0,"pth":"rgb(238,236,51)","nth":"#800000","thtype":2,"thmin":0,"thmax":10,"thpercentile":98,"height":5,"summeth":1,"smooth":7},"annotation":["13042","22010","30003","40179","60001","70009"],"custom_annotation":["3","bigWig"],"details":{"sample_alias":"216","sample_common_name":"Brain, Hippocampus Middle","collection_method":"Post-Mortem","donor_health_status":"no AD evident at demise","molecule":"genomic DNA","disease":"no AD evident at demise","tissue_type":"Hippocampus Middle","donor_ethnicity":"NA","donor_sex":"Male","biomaterial_type":"Primary Tissue","tissue_depot":"Brain","donor_id":"149","biomaterial_provider":"Rush University Medical Center","donor_age":"81.0 Years","chip_protocol_bead_type":"Protein A-Sepharose 4B","chip_antibody":"H3K4me1","chip_protocol_chromatin_amount":"0.5 to 3 million cells","extraction_protocol":"cell/nuclei lysis","chip_protocol_antibody_amount":"~1 ug","chip_protocol_bead_amount":"10 ul bed volume","chip_protocol":"Bernstein_BROAD_ENCODE_protocol","extraction_protocol_sonication_cycles":"1","chip_antibody_catalog":"ab8895","chip_antibody_provider":"Abcam","chip_antibody_lot":"659352","experiment_type":"Histone H3K4me1","extraction_protocol_type_of_sonicator":"Branson","original_filename":"GSM773021_BI.Brain_Hippocampus_Middle.H3K4me1.149"},"geolst":["GSM773021"]},{"type":"bigWig","name":"E071 H3K4me1 of Brain Hippocampus Middle","url":"http://egg.wustl.edu/d/hg19/GSM916039.bigWig","public":true,"mode":1,"qtc":{"anglescale":1,"pr":238,"pg":236,"pb":51,"nr":255,"ng":0,"nb":0,"pth":"rgb(238,236,51)","nth":"#800000","thtype":2,"thmin":0,"thmax":10,"thpercentile":98,"height":5,"summeth":1,"smooth":7},"annotation":["13042","22010","30003","40162","60001","70009"],"custom_annotation":["3","bigWig"],"details":{"sample_alias":"223","sample_common_name":"Brain, Hippocampus Middle","collection_method":"Post-Mortem","donor_health_status":"no AD present","molecule":"genomic DNA","disease":"no AD present","tissue_type":"Hippocampus Middle","donor_ethnicity":"NA","donor_sex":"Male","biomaterial_type":"Primary Tissue","tissue_depot":"Brain","donor_id":"150","biomaterial_provider":"Rush University Medical Center","donor_age":"73.0 Years","chip_protocol_bead_type":"Protein A-Sepharose 4B","chip_antibody":"H3K4me1","chip_protocol_chromatin_amount":"0.5 to 3 million cells","extraction_protocol":"cell/nuclei lysis","chip_protocol_antibody_amount":"~1 ug","chip_protocol_bead_amount":"10 ul bed volume","chip_protocol":"Bernstein_BROAD_ENCODE_protocol","extraction_protocol_sonication_cycles":"1","chip_antibody_catalog":"ab8895","chip_antibody_provider":"Abcam","chip_antibody_lot":"659352","experiment_type":"Histone H3K4me1","extraction_protocol_type_of_sonicator":"Branson"},"geolst":["GSM916039"]},{"type":"bigWig","name":"E074 H3K4me1 of Brain  Substantia Nigra","url":"http://egg.wustl.edu/d/hg19/GSM669941.bigWig","public":true,"mode":1,"qtc":{"anglescale":1,"pr":238,"pg":236,"pb":51,"nr":255,"ng":0,"nb":0,"pth":"rgb(238,236,51)","nth":"#800000","thtype":2,"thmin":0,"thmax":10,"thpercentile":98,"height":5,"summeth":1,"smooth":7},"annotation":["13045","22010","30003","40011","60002","70009"],"custom_annotation":["3","bigWig"],"details":{"sample_alias":"171"," sample_common_name":"Brain, Substantia Nigra","collection_method":"post-mortem","donor_health_status":"NA","molecule":"genomic DNA","disease":"none","tissue_type":"Substantia Nigra","passage_if_expanded":"NA","donor_ethnicity":"NA","donor_sex":"Female","biomaterial_type":"Primary Tissue","tissue_depot":"brain","donor_id":"112","biomaterial_provider":"Rush University Medical Center","donor_age":"75","chip_protocol_bead_type":"Protein A-Sepharose 4B","chip_antibody":"H3K4Me1","chip_protocol_chromatin_amount":"10 million cells","extraction_protocol":"SDS lysis","chip_protocol_antibody_amount":"2-15 ug","chip_protocol_bead_amount":"70 ul bed volume","chip_protocol":"Bernstein_BROAD_ENCODE_protocol","extraction_protocol_sonication_cycles":"1","chip_antibody_catalog":"ab8895","chip_antibody_provider":"Abcam","chip_antibody_lot":"151304","experiment_type":"Histone H3K4me1","extraction_protocol_type_of_sonicator":"Bioruptor","original_filename":"GSM669941_BI.Brain_Substantia_Nigra.H3K4me1.112.bigWig","Embargo end date":"2011-12-31"},"geolst":["GSM669941"]},{"type":"bigWig","name":"E074 H3K4me1 of Brain  Substantia Nigra","url":"http://egg.wustl.edu/d/hg19/GSM772898_0.bigWig","public":true,"mode":1,"qtc":{"anglescale":1,"pr":238,"pg":236,"pb":51,"nr":255,"ng":0,"nb":0,"pth":"rgb(238,236,51)","nth":"#800000","thtype":2,"thmin":0,"thmax":10,"thpercentile":98,"height":5,"summeth":1,"smooth":7},"annotation":["13045","22010","30003","40179","60001","70009"],"custom_annotation":["3","bigWig"],"details":{"sample_alias":"215","sample_common_name":"Brain, Substantia Nigra","collection_method":"Post-Mortem","donor_health_status":"no AD evident at demise","molecule":"genomic DNA","disease":"no AD evident at demise","tissue_type":"Substantia Nigra","donor_ethnicity":"NA","donor_sex":"Male","biomaterial_type":"Primary Tissue","tissue_depot":"Brain","donor_id":"149","biomaterial_provider":"Rush University Medical Center","donor_age":"81.0 Years","chip_protocol_bead_type":"Protein A-Sepharose 4B","chip_antibody":"H3K4me1","chip_protocol_chromatin_amount":"0.5 to 3 million cells","extraction_protocol":"cell/nuclei lysis","chip_protocol_antibody_amount":"~1 ug","chip_protocol_bead_amount":"10 ul bed volume","chip_protocol":"Bernstein_BROAD_ENCODE_protocol","extraction_protocol_sonication_cycles":"1","chip_antibody_catalog":"ab8895","chip_antibody_provider":"Abcam","chip_antibody_lot":"659352","experiment_type":"Histone H3K4me1","extraction_protocol_type_of_sonicator":"Branson","original_filename":"GSM772898_BI.Brain_Substantia_Nigra.H3K4me1.149"},"geolst":["GSM772898"]},{"type":"bigWig","name":"E068 H3K4me1 of Brain  Anterior Caudate","url":"http://egg.wustl.edu/d/hg19/GSM669970.bigWig","public":true,"mode":1,"qtc":{"anglescale":1,"pr":238,"pg":236,"pb":51,"nr":255,"ng":0,"nb":0,"pth":"rgb(238,236,51)","nth":"#800000","thtype":2,"thmin":0,"thmax":10,"thpercentile":98,"height":5,"summeth":1,"smooth":7},"annotation":["13040","22010","30003","40011","60002","70009"],"custom_annotation":["3","bigWig"],"details":{"sample_alias":"173"," sample_common_name":"Brain, Anterior Caudate","collection_method":"post-mortem","donor_health_status":"NA","molecule":"genomic DNA","disease":"none","tissue_type":"Anterior Caudate","passage_if_expanded":"NA","donor_ethnicity":"NA","donor_sex":"Female","biomaterial_type":"Primary Tissue","tissue_depot":"brain","donor_id":"112","biomaterial_provider":"Rush University Medical Center","donor_age":"75","chip_protocol_bead_type":"Protein A-Sepharose 4B","chip_antibody":"H3K4Me1","chip_protocol_chromatin_amount":"10 million cells","extraction_protocol":"SDS lysis","chip_protocol_antibody_amount":"2-15 ug","chip_protocol_bead_amount":"70 ul bed volume","chip_protocol":"Bernstein_BROAD_ENCODE_protocol","extraction_protocol_sonication_cycles":"1","chip_antibody_catalog":"ab8895","chip_antibody_provider":"Abcam","chip_antibody_lot":"151304","experiment_type":"Histone H3K4me1","extraction_protocol_type_of_sonicator":"Bioruptor","original_filename":"GSM669970_BI.Brain_Anterior_Caudate.H3K4me1.112.bigWig","Embargo end date":"2011-12-31"},"geolst":["GSM669970"]},{"type":"bigWig","name":"E068 H3K4me1 of Brain  Anterior Caudate","url":"http://egg.wustl.edu/d/hg19/GSM772830_0.bigWig","public":true,"mode":1,"qtc":{"anglescale":1,"pr":238,"pg":236,"pb":51,"nr":255,"ng":0,"nb":0,"pth":"rgb(238,236,51)","nth":"#800000","thtype":2,"thmin":0,"thmax":10,"thpercentile":98,"height":5,"summeth":1,"smooth":7},"annotation":["13040","22010","30003","40179","60001","70009"],"custom_annotation":["3","bigWig"],"details":{"sample_alias":"217","sample_common_name":"Brain, Anterior Caudate","collection_method":"Post-Mortem","donor_health_status":"no AD evident at demise","molecule":"genomic DNA","disease":"no AD evident at demise","tissue_type":"Anterior Caudate","donor_ethnicity":"NA","donor_sex":"Male","biomaterial_type":"Primary Tissue","tissue_depot":"Brain","donor_id":"149","biomaterial_provider":"Rush University Medical Center","donor_age":"81.0 Years","chip_protocol_bead_type":"Protein A-Sepharose 4B","chip_antibody":"H3K4me1","chip_protocol_chromatin_amount":"0.5 to 3 million cells","extraction_protocol":"cell/nuclei lysis","chip_protocol_antibody_amount":"~1 ug","chip_protocol_bead_amount":"10 ul bed volume","chip_protocol":"Bernstein_BROAD_ENCODE_protocol","extraction_protocol_sonication_cycles":"1","chip_antibody_catalog":"ab8895","chip_antibody_provider":"Abcam","chip_antibody_lot":"659352","experiment_type":"Histone H3K4me1","extraction_protocol_type_of_sonicator":"Branson","original_filename":"GSM772830_BI.Brain_Anterior_Caudate.H3K4me1.149"},"geolst":["GSM772830"]},{"type":"bigWig","name":"E069 H3K4me1 of Brain  Cingulate Gyrus","url":"http://egg.wustl.edu/d/hg19/GSM670033.bigWig","public":true,"mode":1,"qtc":{"anglescale":1,"pr":238,"pg":236,"pb":51,"nr":255,"ng":0,"nb":0,"pth":"rgb(238,236,51)","nth":"#800000","thtype":2,"thmin":0,"thmax":10,"thpercentile":98,"height":5,"summeth":1,"smooth":7},"annotation":["13041","22010","30003","40011","60002","70009"],"custom_annotation":["3","bigWig"],"details":{"sample_alias":"175"," sample_common_name":"Brain, Cingulate Gyrus","collection_method":"post-mortem","donor_health_status":"NA","molecule":"genomic DNA","disease":"none","tissue_type":"Cingulate Gyrus","passage_if_expanded":"NA","donor_ethnicity":"NA","donor_sex":"Female","biomaterial_type":"Primary Tissue","tissue_depot":"brain","donor_id":"112","biomaterial_provider":"Rush University Medical Center","donor_age":"75","chip_protocol_bead_type":"Protein A-Sepharose 4B","chip_antibody":"H3K4Me1","chip_protocol_chromatin_amount":"10 million cells","extraction_protocol":"SDS lysis","chip_protocol_antibody_amount":"2-15 ug","chip_protocol_bead_amount":"70 ul bed volume","chip_protocol":"Bernstein_BROAD_ENCODE_protocol","extraction_protocol_sonication_cycles":"1","chip_antibody_catalog":"ab8895","chip_antibody_provider":"Abcam","chip_antibody_lot":"151302","experiment_type":"Histone H3K4me1","extraction_protocol_type_of_sonicator":"Bioruptor","original_filename":"GSM670033_BI.Brain_Cingulate_Gyrus.H3K4me1.112.bigWig","Embargo end date":"2011-12-31"},"geolst":["GSM670033"]},{"type":"bigWig","name":"E069 H3K4me1 of Brain Cingulate Gyrus","url":"http://egg.wustl.edu/d/hg19/GSM773007.bigWig","public":true,"mode":1,"qtc":{"anglescale":1,"pr":238,"pg":236,"pb":51,"nr":255,"ng":0,"nb":0,"pth":"rgb(238,236,51)","nth":"#800000","thtype":2,"thmin":0,"thmax":10,"thpercentile":98,"height":5,"summeth":1,"smooth":7},"annotation":["13041","22010","30003","40179","60001","70009"],"custom_annotation":["3","bigWig"],"details":{"sample_alias":"394","sample_common_name":"Brain, Cingulate Gyrus","collection_method":"Post-Mortem","donor_health_status":"no AD evident at demise","molecule":"genomic DNA","disease":"no AD evident at demise","tissue_type":"Cingulate Gyrus","donor_ethnicity":"NA","donor_sex":"Male","biomaterial_type":"Primary Tissue","tissue_depot":"Brain","donor_id":"149","biomaterial_provider":"Rush University Medical Center","donor_age":"81.0 Years","chip_protocol_bead_type":"Protein A-Sepharose 4B","chip_antibody":"H3K4me1","chip_protocol_chromatin_amount":"0.5 to 3 million cells","extraction_protocol":"cell/nuclei lysis","chip_protocol_antibody_amount":"~1 ug","chip_protocol_bead_amount":"10 ul bed volume","chip_protocol":"Bernstein_BROAD_ENCODE_protocol","extraction_protocol_sonication_cycles":"1","chip_antibody_catalog":"ab8895","chip_antibody_provider":"Abcam","chip_antibody_lot":"659352","experiment_type":"Histone H3K4me1","extraction_protocol_type_of_sonicator":"Branson"},"geolst":["GSM773007"]},{"type":"bigWig","name":"E072 H3K4me1 of Brain  Inferior Temporal Lobe","url":"http://egg.wustl.edu/d/hg19/GSM670036.bigWig","public":true,"mode":1,"qtc":{"anglescale":1,"pr":238,"pg":236,"pb":51,"nr":255,"ng":0,"nb":0,"pth":"rgb(238,236,51)","nth":"#800000","thtype":2,"thmin":0,"thmax":10,"thpercentile":98,"height":5,"summeth":1,"smooth":7},"annotation":["13043","22010","30003","40011","60002","70009"],"custom_annotation":["3","bigWig"],"details":{"sample_alias":"176"," sample_common_name":"Brain, Inferior Temporal Lobe","collection_method":"post-mortem","donor_health_status":"NA","molecule":"genomic DNA","disease":"none","tissue_type":"Inferior Temporal Lobe","passage_if_expanded":"NA","donor_ethnicity":"NA","donor_sex":"Female","biomaterial_type":"Primary Tissue","tissue_depot":"brain","donor_id":"112","biomaterial_provider":"Rush University Medical Center","donor_age":"75","chip_protocol_bead_type":"Protein A-Sepharose 4B","chip_antibody":"H3K4Me1","chip_protocol_chromatin_amount":"10 million cells","extraction_protocol":"SDS lysis","chip_protocol_antibody_amount":"2-15 ug","chip_protocol_bead_amount":"70 ul bed volume","chip_protocol":"Bernstein_BROAD_ENCODE_protocol","extraction_protocol_sonication_cycles":"1","chip_antibody_catalog":"ab8895","chip_antibody_provider":"Abcam","chip_antibody_lot":"151302","experiment_type":"Histone H3K4me1","extraction_protocol_type_of_sonicator":"Bioruptor","original_filename":"GSM670036_BI.Brain_Inferior_Temporal_Lobe.H3K4me1.112.bigWig","Embargo end date":"2011-12-31"},"geolst":["GSM670036"]},{"type":"bigWig","name":"E072 H3K4me1 of Brain  Inferior Temporal Lobe","url":"http://egg.wustl.edu/d/hg19/GSM772992_0.bigWig","public":true,"mode":1,"qtc":{"anglescale":1,"pr":238,"pg":236,"pb":51,"nr":255,"ng":0,"nb":0,"pth":"rgb(238,236,51)","nth":"#800000","thtype":2,"thmin":0,"thmax":10,"thpercentile":98,"height":5,"summeth":1,"smooth":7},"annotation":["13043","22010","30003","40179","60001","70009"],"custom_annotation":["3","bigWig"],"details":{"sample_alias":"220","sample_common_name":"Brain, Inferior Temporal Lobe","collection_method":"Post-Mortem","donor_health_status":"no AD evident at demise","molecule":"genomic DNA","disease":"no AD evident at demise","tissue_type":"Inferior Temporal Lobe","donor_ethnicity":"NA","donor_sex":"Male","biomaterial_type":"Primary Tissue","tissue_depot":"Brain","donor_id":"149","biomaterial_provider":"Rush University Medical Center","donor_age":"81.0 Years","chip_protocol_bead_type":"Protein A-Sepharose 4B","chip_antibody":"H3K4me1","chip_protocol_chromatin_amount":"0.5 to 3 million cells","extraction_protocol":"cell/nuclei lysis","chip_protocol_antibody_amount":"~1 ug","chip_protocol_bead_amount":"10 ul bed volume","chip_protocol":"Bernstein_BROAD_ENCODE_protocol","extraction_protocol_sonication_cycles":"1","chip_antibody_catalog":"ab8895","chip_antibody_provider":"Abcam","chip_antibody_lot":"659352","experiment_type":"Histone H3K4me1","extraction_protocol_type_of_sonicator":"Branson","original_filename":"GSM772992_BI.Brain_Inferior_Temporal_Lobe.H3K4me1.149"},"geolst":["GSM772992"]},{"type":"bigWig","name":"E067 H3K4me1 of Brain Angular Gyrus","url":"http://egg.wustl.edu/d/hg19/GSM772962_0.bigWig","public":true,"mode":1,"qtc":{"anglescale":1,"pr":238,"pg":236,"pb":51,"nr":255,"ng":0,"nb":0,"pth":"rgb(238,236,51)","nth":"#800000","thtype":2,"thmin":0,"thmax":10,"thpercentile":98,"height":5,"summeth":1,"smooth":7},"annotation":["13160","22010","30003","40179","60001","70009"],"custom_annotation":["3","bigWig"],"details":{"sample_alias":"221","sample_common_name":"Brain, Angular Gyrus","collection_method":"Post-Mortem","donor_health_status":"no AD evident at demise","molecule":"genomic DNA","disease":"no AD evident at demise","tissue_type":"Angular gyrus","donor_ethnicity":"NA","donor_sex":"Male","biomaterial_type":"Primary Tissue","tissue_depot":"Brain","donor_id":"149","biomaterial_provider":"Rush University Medical Center","donor_age":"81.0 Years","chip_protocol_bead_type":"Protein A-Sepharose 4B","chip_antibody":"H3K4me1","chip_protocol_chromatin_amount":"0.5 to 3 million cells","extraction_protocol":"cell/nuclei lysis","chip_protocol_antibody_amount":"~1 ug","chip_protocol_bead_amount":"10 ul bed volume","chip_protocol":"Bernstein_BROAD_ENCODE_protocol","extraction_protocol_sonication_cycles":"1","chip_antibody_catalog":"ab8895","chip_antibody_provider":"Abcam","chip_antibody_lot":"659352","experiment_type":"Histone H3K4me1","extraction_protocol_type_of_sonicator":"Branson","original_filename":"GSM772962_BI.Brain_Angular_Gyrus.H3K4me1.149"},"geolst":["GSM772962"]},{"type":"bigWig","name":"E067 H3K4me1 of Brain Angular Gyrus","url":"http://egg.wustl.edu/d/hg19/GSM772770_0.bigWig","public":true,"mode":1,"qtc":{"anglescale":1,"pr":238,"pg":236,"pb":51,"nr":255,"ng":0,"nb":0,"pth":"rgb(238,236,51)","nth":"#800000","thtype":2,"thmin":0,"thmax":10,"thpercentile":98,"height":5,"summeth":1,"smooth":7},"annotation":["13160","22010","30003","40011","60002","70009"],"custom_annotation":["3","bigWig"],"details":{"sample_alias":"177","sample_common_name":"Brain, Angular Gyrus","collection_method":"post-mortem","donor_health_status":"NA","molecule":"genomic DNA","disease":"none","tissue_type":"Angular Gyrus","passage_if_expanded":"NA","donor_ethnicity":"NA","donor_sex":"Female","biomaterial_type":"Primary Tissue","tissue_depot":"brain","donor_id":"112","biomaterial_provider":"Rush University Medical Center","donor_age":"75","chip_protocol_bead_type":"Protein A-Sepharose 4B","chip_antibody":"H3K4Me1","chip_protocol_chromatin_amount":"10 million cells","extraction_protocol":"SDS lysis","chip_protocol_antibody_amount":"2-15 ug","chip_protocol_bead_amount":"70 ul bed volume","chip_protocol":"Bernstein_BROAD_ENCODE_protocol","extraction_protocol_sonication_cycles":"1","chip_antibody_catalog":"ab8895","chip_antibody_provider":"Abcam","chip_antibody_lot":"151302","experiment_type":"Histone H3K4me1","extraction_protocol_type_of_sonicator":"Bioruptor","original_filename":"GSM772770_BI.Brain_Angular_Gyrus.H3K4me1.112"},"geolst":["GSM772770"]},{"type":"bigWig","name":"E073 H3K4me1 of Brain  Mid Frontal Lobe","url":"http://egg.wustl.edu/d/hg19/GSM670015.bigWig","public":true,"mode":1,"qtc":{"anglescale":1,"pr":238,"pg":236,"pb":51,"nr":255,"ng":0,"nb":0,"pth":"rgb(238,236,51)","nth":"#800000","thtype":2,"thmin":0,"thmax":10,"thpercentile":98,"height":5,"summeth":1,"smooth":7},"annotation":["13044","22010","30003","40011","60002","70009"],"custom_annotation":["3","bigWig"],"details":{"sample_alias":"174"," sample_common_name":"Brain, Mid Frontal Lobe","collection_method":"post-mortem","donor_health_status":"NA","molecule":"genomic DNA","disease":"none","tissue_type":"Mid Frontal Lobe","passage_if_expanded":"NA","donor_ethnicity":"NA","donor_sex":"Female","biomaterial_type":"Primary Tissue","tissue_depot":"brain","donor_id":"112","biomaterial_provider":"Rush University Medical Center","donor_age":"75","chip_protocol_bead_type":"Protein A-Sepharose 4B","chip_antibody":"H3K4Me1","chip_protocol_chromatin_amount":"10 million cells","extraction_protocol":"SDS lysis","chip_protocol_antibody_amount":"2-15 ug","chip_protocol_bead_amount":"70 ul bed volume","chip_protocol":"Bernstein_BROAD_ENCODE_protocol","extraction_protocol_sonication_cycles":"1","chip_antibody_catalog":"ab8895","chip_antibody_provider":"Abcam","chip_antibody_lot":"151302","experiment_type":"Histone H3K4me1","extraction_protocol_type_of_sonicator":"Bioruptor","original_filename":"GSM670015_BI.Brain_Mid_Frontal_Lobe.H3K4me1.112.bigWig","Embargo end date":"2011-12-31"},"geolst":["GSM670015"]},{"type":"bigWig","name":"E073 H3K4me1 of Brain Mid Frontal Lobe","url":"http://egg.wustl.edu/d/hg19/GSM773014.bigWig","public":true,"mode":1,"qtc":{"anglescale":1,"pr":238,"pg":236,"pb":51,"nr":255,"ng":0,"nb":0,"pth":"rgb(238,236,51)","nth":"#800000","thtype":2,"thmin":0,"thmax":10,"thpercentile":98,"height":5,"summeth":1,"smooth":7},"annotation":["13044","22010","30003","40179","60001","70009"],"custom_annotation":["3","bigWig"],"details":{"sample_alias":"218","sample_common_name":"Brain, Mid Frontal Lobe","collection_method":"Post-Mortem","donor_health_status":"no AD evident at demise","molecule":"genomic DNA","disease":"no AD evident at demise","tissue_type":"Mid Frontal Lobe","donor_ethnicity":"NA","donor_sex":"Male","biomaterial_type":"Primary Tissue","tissue_depot":"Brain","donor_id":"149","biomaterial_provider":"Rush University Medical Center","donor_age":"81.0 Years","chip_protocol_bead_type":"Protein A-Sepharose 4B","chip_antibody":"H3K4me1","chip_protocol_chromatin_amount":"0.5 to 3 million cells","extraction_protocol":"cell/nuclei lysis","chip_protocol_antibody_amount":"~1 ug","chip_protocol_bead_amount":"10 ul bed volume","chip_protocol":"Bernstein_BROAD_ENCODE_protocol","extraction_protocol_sonication_cycles":"1","chip_antibody_catalog":"ab8895","chip_antibody_provider":"Abcam","chip_antibody_lot":"659352","experiment_type":"Histone H3K4me1","extraction_protocol_type_of_sonicator":"Branson"},"geolst":["GSM773014"]},{"type":"bigWig","name":"E070 H3K4me1 of Brain Germinal Matrix","url":"http://egg.wustl.edu/d/hg19/GSM806939_0.bigWig","public":true,"mode":1,"qtc":{"anglescale":1,"pr":238,"pg":236,"pb":51,"nr":255,"ng":0,"nb":0,"pth":"rgb(238,236,51)","nth":"#800000","thtype":2,"thmin":0,"thmax":10,"thpercentile":98,"height":5,"summeth":1,"smooth":7},"annotation":["13155","22010","30014","40137","60001","70009"],"custom_annotation":["3","bigWig"],"details":{"sample_alias":"Brain Germinal Matrix HuFGM02","sample_common_name":"Brain, Germinal Matrix","molecule":"genomic DNA","disease":"None","biomaterial_provider":"Costello Lab UCSF","biomaterial_type":"Primary Tissue","tissue_type":"Brain-Germinal Matrix","tissue_depot":"NA","collection_method":"NA","donor_id":"HuFGM02","donor_age":"20GW","donor_health_status":"Disease Free","donor_sex":"Male","donor_ethnicity":"NA","experiment_type":"Histone H3K4me1","extraction_protocol":"BCCAGSC ChIP Standard Operating Procedure","extraction_protocol_type_of_sonicator":"Fisher 550 Sonic Dismembrator","extraction_protocol_sonication_cycles":"10min","chip_protocol":"BCCAGSC ChIP Standard Operating Procedure","chip_protocol_chromatin_amount":"10ug","chip_protocol_bead_type":"Sepharose A/G beads","chip_protocol_bead_amount":"20ul","chip_protocol_antibody_amount":"5ug","size_fraction":"101-311bp","chip_antibody":"H3K4me1","chip_antibody_provider":"diagenode","chip_antibody_catalog":"pAb037050","chip_antibody_lot":"A399002341P","original_filename":"GSM806939_UCSF-UBC.Brain_Germinal_Matrix.H3K4me1.HuFGM02.bigWig"},"geolst":["GSM806939"]},{"type":"bigWig","name":"E070 H3K4me1 of Brain Germinal Matrix","url":"http://egg.wustl.edu/d/hg19/GSM817228.bigWig","public":true,"mode":1,"qtc":{"anglescale":1,"pr":238,"pg":236,"pb":51,"nr":255,"ng":0,"nb":0,"pth":"rgb(238,236,51)","nth":"#800000","thtype":2,"thmin":0,"thmax":10,"thpercentile":98,"height":5,"summeth":1,"smooth":7},"annotation":["13155","22010","30014","40138","60001","70004"],"custom_annotation":["3","bigWig"],"details":{"sample_alias":"Brain Germinal Matrix HuFGM01","sample_common_name":"Brain, Germinal Matrix","molecule":"genomic DNA","disease":"None","biomaterial_provider":"Costello Lab UCSF","biomaterial_type":"Primary Tissue","tissue_type":"Brain-Germinal Matrix","tissue_depot":"NA","collection_method":"NA","donor_id":"HuFGM01","donor_age":"20GW","donor_health_status":"Disease Free","donor_sex":"Male","donor_ethnicity":"Caucasian","note":"Twin of HuFGM02","experiment_type":"Histone H3K4me1","extraction_protocol":"BCCAGSC ChIP Standard Operating Procedure","extraction_protocol_type_of_sonicator":"Fisher 550 Sonic Dismembrator","extraction_protocol_sonication_cycles":"10min","chip_protocol":"BCCAGSC ChIP Standard Operating Procedure","chip_protocol_chromatin_amount":"15ug","chip_protocol_bead_type":"Sepharose A/G beads","chip_protocol_bead_amount":"20ul","chip_protocol_antibody_amount":"5ug","size_fraction":"66-316bp","chip_antibody":"H3K4me1","chip_antibody_provider":"diagenode","chip_antibody_catalog":"pAb037050","chip_antibody_lot":"A399002341P"},"geolst":["GSM817228"]},{"type":"bigWig","name":"E082 H3K4me1 of fetal brain","url":"http://egg.wustl.edu/d/hg19/GSM706850_0.bigWig","public":true,"mode":1,"qtc":{"anglescale":1,"pr":238,"pg":236,"pb":51,"nr":255,"ng":0,"nb":0,"pth":"rgb(238,236,51)","nth":"#800000","thtype":2,"thmin":0,"thmax":10,"thpercentile":98,"height":5,"summeth":1,"smooth":7},"annotation":["12003","22010","30003","40180","60003","70009"],"custom_annotation":["3","bigWig"],"details":{"sample_alias":"BioSAli 186","sample_common_name":"Fetal Brain","collection_method":"Post-Mortem","donor_health_status":"presumed normal","molecule":"genomic DNA","disease":"presumed normal","tissue_type":"Fetal Brain","donor_ethnicity":"NA","donor_sex":"Unknown","biomaterial_type":"Primary Tissue","tissue_depot":"Brain","donor_id":"UW H22676","biomaterial_provider":"University of Washington","donor_age":"120.0 Days","chip_protocol_bead_type":"Protein A-Sepharose 4B","chip_antibody":"H3K4me1","chip_protocol_chromatin_amount":"10 million cells","extraction_protocol":"SDS lysis","chip_protocol_antibody_amount":"2-15 ug","chip_protocol_bead_amount":"70 ul bed volume","chip_protocol":"Bernstein_BROAD_ENCODE_protocol","extraction_protocol_sonication_cycles":"1","chip_antibody_catalog":"ab8895","chip_antibody_provider":"Abcam","chip_antibody_lot":"659352","experiment_type":"Histone H3K4me1","extraction_protocol_type_of_sonicator":"Bioruptor","original_filename":"GSM706850_BI.Fetal_Brain.H3K4me1.UW_H22676.bigWig"},"geolst":["GSM706850"]},{"type":"bigWig","name":"E082 H3K4me1 of fetal brain","url":"http://egg.wustl.edu/d/hg19/GSM806934_0.bigWig","public":true,"mode":1,"qtc":{"anglescale":1,"pr":238,"pg":236,"pb":51,"nr":255,"ng":0,"nb":0,"pth":"rgb(238,236,51)","nth":"#800000","thtype":2,"thmin":0,"thmax":10,"thpercentile":98,"height":5,"summeth":1,"smooth":7},"annotation":["12003","22010","30014","40116","60002","70009"],"custom_annotation":["3","bigWig"],"details":{"sample_alias":"Brain HuFNSC02","sample_common_name":"Fetal Brain","molecule":"genomic DNA","disease":"None","biomaterial_provider":"Keith Ligon, Harvard","biomaterial_type":"Primary Tissue","tissue_type":"Brain","tissue_depot":"NA","collection_method":"NA","donor_id":"HuFNSC02","donor_age":"17GW","donor_health_status":"Disease Free","donor_sex":"Female","donor_ethnicity":"NA","note":"Twin of HuFNSC01","experiment_type":"Histone H3K4me1","extraction_protocol":"BCCAGSC ChIP Standard Operating Procedure","extraction_protocol_type_of_sonicator":"Fisher 550 Sonic Dismembrator","extraction_protocol_sonication_cycles":"10min","chip_protocol":"BCCAGSC ChIP Standard Operating Procedure","chip_protocol_chromatin_amount":"5ug","chip_protocol_bead_type":"Sepharose A/G beads","chip_protocol_bead_amount":"20ul","chip_protocol_antibody_amount":"5ug","size_fraction":"112-416bp","chip_antibody":"H3K4me1","chip_antibody_provider":"diagenode","chip_antibody_catalog":"pAb037050","chip_antibody_lot":"A399002341P","original_filename":"GSM806934_UCSF-UBC.Fetal_Brain.H3K4me1.HuFNSC02.bigWig"},"geolst":["GSM806934"]},{"type":"bigWig","name":"E082 H3K4me1 of fetal brain","url":"http://egg.wustl.edu/d/hg19/GSM806942_0.bigWig","public":true,"mode":1,"qtc":{"anglescale":1,"pr":238,"pg":236,"pb":51,"nr":255,"ng":0,"nb":0,"pth":"rgb(238,236,51)","nth":"#800000","thtype":2,"thmin":0,"thmax":10,"thpercentile":98,"height":5,"summeth":1,"smooth":7},"annotation":["12003","22010","30014","40115","60002","70009"],"custom_annotation":["3","bigWig"],"details":{"sample_alias":"Brain HuFNSC01","sample_common_name":"Fetal Brain","molecule":"genomic DNA","disease":"None","biomaterial_provider":"Keith Ligon, Harvard","biomaterial_type":"Primary Tissue","tissue_type":"Brain","tissue_depot":"NA","collection_method":"NA","donor_id":"HuFNSC01","donor_age":"17GW","donor_health_status":"Disease Free","donor_sex":"Female","donor_ethnicity":"NA","note":"Twin of HuFNSC02","experiment_type":"Histone H3K4me1","extraction_protocol":"BCCAGSC ChIP Standard Operating Procedure","extraction_protocol_type_of_sonicator":"Fisher 550 Sonic Dismembrator","extraction_protocol_sonication_cycles":"10min","chip_protocol":"BCCAGSC ChIP Standard Operating Procedure","chip_protocol_chromatin_amount":"5ug","chip_protocol_bead_type":"Sepharose A and G Mix","chip_protocol_bead_amount":"20ul","chip_protocol_antibody_amount":"5ug","size_fraction":"80-349bp","chip_antibody":"H3K4me1","chip_antibody_provider":"Diagenode","chip_antibody_catalog":"pAb037050","chip_antibody_lot":"A399002341P","original_filename":"GSM806942_UCSF-UBC.Fetal_Brain.H3K4me1.HuFNSC01.bigWig"},"geolst":["GSM806942"]},{"type":"bigWig","name":"E063 H3K4me1 of adipose nuclei","url":"http://egg.wustl.edu/d/hg19/GSM621425.bigWig","public":true,"mode":1,"qtc":{"anglescale":1,"pr":238,"pg":236,"pb":51,"nr":255,"ng":0,"nb":0,"pth":"rgb(238,236,51)","nth":"#800000","thtype":2,"thmin":0,"thmax":10,"thpercentile":98,"height":5,"summeth":1,"smooth":7},"annotation":["13013","22010","30003","40002","60002","70009"],"custom_annotation":["1","bigWig"],"details":{"collection_method":"surgery"," donor_health_status":"NA","molecule":"genomic DNA","disease":"none","tissue_type":"Adipose Nuclei","passage_if_expanded":"NA","donor_ethnicity":"NA","donor_sex":"Female","biomaterial_type":"Primary Tissue","tissue_depot":"abdomen","donor_id":"7","biomaterial_provider":"Harvard University","donor_age":"49","chip_protocol_bead_type":"Protein A-Sepharose 4B","chip_antibody":"H3K4Me1","chip_protocol_chromatin_amount":"10 million cells","extraction_protocol":"SDS lysis","chip_protocol_antibody_amount":"2-15 ug","chip_protocol_bead_amount":"70 ul bed volume","chip_protocol":"Bernstein_BROAD_ENCODE_protocol","extraction_protocol_sonication_cycles":"1","chip_antibody_catalog":"ab8895","chip_antibody_provider":"Abcam","chip_antibody_lot":"659352","experiment_type":"Histone H3K4me1","extraction_protocol_type_of_sonicator":"Bioruptor","original_filename":"GSM621425_BI.Adipose_Nuclei.H3K4me1.7.bigWig","Embargo end date":"2011-08-12"},"geolst":["GSM621425"]},{"type":"bigWig","name":"E063 H3K4me1 of adipose nuclei","url":"http://egg.wustl.edu/d/hg19/GSM669908.bigWig","public":true,"mode":1,"qtc":{"anglescale":1,"pr":238,"pg":236,"pb":51,"nr":255,"ng":0,"nb":0,"pth":"rgb(238,236,51)","nth":"#800000","thtype":2,"thmin":0,"thmax":10,"thpercentile":98,"height":5,"summeth":1,"smooth":7},"annotation":["13013","22010","30003","40004","60002","70009"],"custom_annotation":["1","bigWig"],"details":{"sample_alias":"140"," sample_common_name":"Adipose Nuclei","collection_method":"surgery","donor_health_status":"NA","molecule":"genomic DNA","disease":"none","tissue_type":"Adipose Nuclei","passage_if_expanded":"NA","donor_ethnicity":"NA","donor_sex":"Female","biomaterial_type":"Primary Tissue","tissue_depot":"abdomen","donor_id":"92","biomaterial_provider":"Harvard University","donor_age":"59","chip_protocol_bead_type":"Protein A-Sepharose 4B","chip_antibody":"H3K4Me1","chip_protocol_chromatin_amount":"10 million cells","extraction_protocol":"SDS lysis","chip_protocol_antibody_amount":"2-15 ug","chip_protocol_bead_amount":"70 ul bed volume","chip_protocol":"Bernstein_BROAD_ENCODE_protocol","extraction_protocol_sonication_cycles":"1","chip_antibody_catalog":"ab8895","chip_antibody_provider":"Abcam","chip_antibody_lot":"151304","experiment_type":"Histone H3K4me1","extraction_protocol_type_of_sonicator":"Bioruptor","original_filename":"GSM669908_BI.Adipose_Nuclei.H3K4me1.92.bigWig","Embargo end date":"2011-12-31"},"geolst":["GSM669908"]},{"type":"bigWig","name":"E063 H3K4me1 of adipose nuclei","url":"http://egg.wustl.edu/d/hg19/GSM669975.bigWig","public":true,"mode":1,"qtc":{"anglescale":1,"pr":238,"pg":236,"pb":51,"nr":255,"ng":0,"nb":0,"pth":"rgb(238,236,51)","nth":"#800000","thtype":2,"thmin":0,"thmax":10,"thpercentile":98,"height":5,"summeth":1,"smooth":7},"annotation":["13013","22010","30003","40005","60002","70009"],"custom_annotation":["1","bigWig"],"details":{"sample_alias":"142"," sample_common_name":"Adipose Nuclei","collection_method":"surgery","donor_health_status":"NA","molecule":"genomic DNA","disease":"none","tissue_type":"Adipose Nuclei","passage_if_expanded":"NA","donor_ethnicity":"NA","donor_sex":"Female","biomaterial_type":"Primary Tissue","tissue_depot":"abdomen","donor_id":"94","biomaterial_provider":"Harvard University","donor_age":"25","chip_protocol_bead_type":"Protein A-Sepharose 4B","chip_antibody":"H3K4Me1","chip_protocol_chromatin_amount":"10 million cells","extraction_protocol":"SDS lysis","chip_protocol_antibody_amount":"2-15 ug","chip_protocol_bead_amount":"70 ul bed volume","chip_protocol":"Bernstein_BROAD_ENCODE_protocol","extraction_protocol_sonication_cycles":"1","chip_antibody_catalog":"ab8895","chip_antibody_provider":"Abcam","chip_antibody_lot":"151304","experiment_type":"Histone H3K4me1","extraction_protocol_type_of_sonicator":"Bioruptor","original_filename":"GSM669975_BI.Adipose_Nuclei.H3K4me1.94.bigWig","Embargo end date":"2011-12-31"},"geolst":["GSM669975"]},{"type":"bigWig","name":"E063 H3K4me1 of adipose nuclei","url":"http://egg.wustl.edu/d/hg19/GSM670045.bigWig","public":true,"mode":1,"qtc":{"anglescale":1,"pr":238,"pg":236,"pb":51,"nr":255,"ng":0,"nb":0,"pth":"rgb(238,236,51)","nth":"#800000","thtype":2,"thmin":0,"thmax":10,"thpercentile":98,"height":5,"summeth":1,"smooth":7},"annotation":["13013","22010","30003","40006","60002","70009"],"custom_annotation":["1","bigWig"],"details":{"sample_alias":"141"," sample_common_name":"Adipose Nuclei","collection_method":"surgery","donor_health_status":"NA","molecule":"genomic DNA","disease":"none","tissue_type":"Adipose Nuclei","passage_if_expanded":"NA","donor_ethnicity":"NA","donor_sex":"Female","biomaterial_type":"Primary Tissue","tissue_depot":"abdomen","donor_id":"93","biomaterial_provider":"Harvard University","donor_age":"41","chip_protocol_bead_type":"Protein A-Sepharose 4B","chip_antibody":"H3K4Me1","chip_protocol_chromatin_amount":"10 million cells","extraction_protocol":"SDS lysis","chip_protocol_antibody_amount":"2-15 ug","chip_protocol_bead_amount":"70 ul bed volume","chip_protocol":"Bernstein_BROAD_ENCODE_protocol","extraction_protocol_sonication_cycles":"1","chip_antibody_catalog":"ab8895","chip_antibody_provider":"Abcam","chip_antibody_lot":"151304","experiment_type":"Histone H3K4me1","extraction_protocol_type_of_sonicator":"Bioruptor","original_filename":"GSM670045_BI.Adipose_Nuclei.H3K4me1.93.bigWig","Embargo end date":"2011-12-31"},"geolst":["GSM670045"]},{"type":"bigWig","name":"E063 H3K4me1 of adipose nuclei","url":"http://egg.wustl.edu/d/hg19/GSM772757_0.bigWig","public":true,"mode":1,"qtc":{"anglescale":1,"pr":238,"pg":236,"pb":51,"nr":255,"ng":0,"nb":0,"pth":"rgb(238,236,51)","nth":"#800000","thtype":2,"thmin":0,"thmax":10,"thpercentile":98,"height":5,"summeth":1,"smooth":7},"annotation":["13013","22010","30003","40003","60002","70009"],"custom_annotation":["1","bigWig"],"details":{"sample_alias":"143","sample_common_name":"Adipose Nuclei","collection_method":"surgery","donor_health_status":"NA","molecule":"genomic DNA","disease":"none","tissue_type":"Adipose Nuclei","passage_if_expanded":"NA","donor_ethnicity":"NA","donor_sex":"Female","biomaterial_type":"Primary Tissue","tissue_depot":"abdomen","donor_id":"95","biomaterial_provider":"Harvard University","donor_age":"81","chip_protocol_bead_type":"Protein A-Sepharose 4B","chip_antibody":"H3K4Me1","chip_protocol_chromatin_amount":"10 million cells","extraction_protocol":"SDS lysis","chip_protocol_antibody_amount":"2-15 ug","chip_protocol_bead_amount":"70 ul bed volume","chip_protocol":"Bernstein_BROAD_ENCODE_protocol","extraction_protocol_sonication_cycles":"1","chip_antibody_catalog":"ab8895","chip_antibody_provider":"Abcam","chip_antibody_lot":"151304","experiment_type":"Histone H3K4me1","extraction_protocol_type_of_sonicator":"Bioruptor","original_filename":"GSM772757_BI.Adipose_Nuclei.H3K4me1.95"},"geolst":["GSM772757"]},{"type":"bedGraph","name":"E100 ChIP-Seq Analysis of H3K4me1 in Human Psoas Muscle Tissue","url":"http://egg.wustl.edu/d/hg19/GSM956021_1.gz","public":true,"mode":1,"qtc":{"anglescale":1,"pr":238,"pg":236,"pb":51,"nr":255,"ng":0,"nb":0,"pth":"rgb(238,236,51)","nth":"#800000","thtype":2,"thmin":0,"thmax":10,"thpercentile":98,"height":5,"summeth":1,"smooth":7},"annotation":["13218","22010","30002","40216"],"custom_annotation":["12","bedGraph"],"details":{"sample alias":"STL003PO-01","sample common name":"Psoas Muscle","molecule":"genomic DNA","disease":"None","biomaterial_provider":"Shin Lin, Stanford University","biomaterial_type":"Primary Tissue","tissue_type":"Psoas Muscle","tissue_depot":"N/A","collection_method":"Autopsy","donor_id":"STL003","donor_age":"34","donor_health_status":"polysubstance abuse (NO diabetes, hypertension, coronary artery disease, cancer)","donor_sex":"Male","donor_ethnicity":"Caucasian","experiment_type":"Histone H3K4me1","extraction_protocol":"See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf","extraction_protocol_type_of_sonicator":"Biorupter","extraction_protocol_sonication_cycles":"80","chip_protocol":"See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf","chip_protocol_chromatin_amount":"500 micrograms","chip_protocol_bead_type":"magnetic anti-rabbit","chip_protocol_bead_amount":"33,500,000","chip_protocol_antibody_amount":"5 micrograms","chip_antibody":"H3K4me1","chip_antibody_provider":"Abcam","chip_antibody_catalog":"ab8895","chip_antibody_lot":"720417","original_filename":"GSM956021_UCSD.Psoas_Muscle.H3K4me1.STL003.wig"},"geolst":["GSM956021"]},{"type":"bedGraph","name":"E100 ChIP-Seq Analysis of H3K4me1 in Human Psoas Muscle Tissue","url":"http://egg.wustl.edu/d/hg19/GSM1059444_1.gz","public":true,"mode":1,"qtc":{"anglescale":1,"pr":238,"pg":236,"pb":51,"nr":255,"ng":0,"nb":0,"pth":"rgb(238,236,51)","nth":"#800000","thtype":2,"thmin":0,"thmax":10,"thpercentile":98,"height":5,"summeth":1,"smooth":7},"annotation":["13218","22010","30002","40272"],"custom_annotation":["12","bedGraph"],"details":{"sample alias":"STL001PO-01","sample common name":"Psoas Muscle","molecule":"genomic DNA","disease":"None","biomaterial_provider":"Shin Lin, Stanford University","biomaterial_type":"Primary Tissue","tissue_type":"Psoas Muscle","tissue_depot":"N/A","collection_method":"Autopsy","donor_id":"STL001","donor_age":"3","donor_health_status":"healthy, no prior medical history (NO diabetes, hypertension, coronary artery disease, cancer)","donor_sex":"Male","donor_ethnicity":"Caucasian and African American","experiment_type":"Histone H3K4me1","extraction_protocol":"See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf","extraction_protocol_type_of_sonicator":"Biorupter","extraction_protocol_sonication_cycles":"80","chip_protocol":"See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf","chip_protocol_chromatin_amount":"500 micrograms","chip_protocol_bead_type":"magnetic anti-rabbit","chip_protocol_bead_amount":"33,500,000","chip_protocol_antibody_amount":"5 micrograms","chip_antibody":"H3K4me1","chip_antibody_provider":"Abcam","chip_antibody_catalog":"Ab8895","chip_antibody_lot":"720417","original_filename":"GSM1059444_UCSD.Psoas_Muscle.H3K4me1.STL001.wig"},"geolst":["GSM1059444"]},{"type":"bigWig","name":"E108 H3K4me1 of skeletal muscle","url":"http://egg.wustl.edu/d/hg19/GSM621640.bigWig","public":true,"mode":1,"qtc":{"anglescale":1,"pr":238,"pg":236,"pb":51,"nr":255,"ng":0,"nb":0,"pth":"rgb(238,236,51)","nth":"#800000","thtype":2,"thmin":0,"thmax":10,"thpercentile":98,"height":5,"summeth":1,"smooth":7},"annotation":["13003","22010","30003","40044","60003","70009"],"custom_annotation":["12","bigWig"],"details":{"collection_method":"surgery"," donor_health_status":"NA","molecule":"genomic DNA","disease":"none","tissue_type":"Skeletal muscle","passage_if_expanded":"NA","donor_ethnicity":"NA","donor_sex":"Unknown","biomaterial_type":"Primary Tissue","tissue_depot":"unknown","donor_id":"19","biomaterial_provider":"MGH Pathology","donor_age":"NA","chip_protocol_bead_type":"Protein A-Sepharose 4B","chip_antibody":"H3K4Me1","chip_protocol_chromatin_amount":"10 million cells","extraction_protocol":"SDS lysis","chip_protocol_antibody_amount":"2-15 ug","chip_protocol_bead_amount":"70 ul bed volume","chip_protocol":"Bernstein_BROAD_ENCODE_protocol","extraction_protocol_sonication_cycles":"1","chip_antibody_catalog":"ab8895","chip_antibody_provider":"Abcam","chip_antibody_lot":"659352","experiment_type":"Histone H3K4me1","extraction_protocol_type_of_sonicator":"Bioruptor","original_filename":"GSM621640_BI.Skeletal_Muscle.H3K4me1.19.bigWig","Embargo end date":"2011-08-12"},"geolst":["GSM621640"]},{"type":"bigWig","name":"E108 H3K4me1 of skeletal muscle","url":"http://egg.wustl.edu/d/hg19/GSM621679.bigWig","public":true,"mode":1,"qtc":{"anglescale":1,"pr":238,"pg":236,"pb":51,"nr":255,"ng":0,"nb":0,"pth":"rgb(238,236,51)","nth":"#800000","thtype":2,"thmin":0,"thmax":10,"thpercentile":98,"height":5,"summeth":1,"smooth":7},"annotation":["13003","22010","30003","40046","60001","70004"],"custom_annotation":["12","bigWig"],"details":{"collection_method":"surgery"," donor_health_status":"&quot,NL muscle,... Osteomylitis - BKA&quot,","molecule":"genomic DNA","disease":"none","tissue_type":"Skeletal muscle","passage_if_expanded":"NA","donor_ethnicity":"white","donor_sex":"Male","biomaterial_type":"Primary Tissue","tissue_depot":"unknown","donor_id":"63","biomaterial_provider":"MGH Pathology","donor_age":"54 years","chip_protocol_bead_type":"Protein A-Sepharose 4B","chip_antibody":"H3K4Me1","chip_protocol_chromatin_amount":"10 million cells","extraction_protocol":"SDS lysis","chip_protocol_antibody_amount":"2-15 ug","chip_protocol_bead_amount":"70 ul bed volume","chip_protocol":"Bernstein_BROAD_ENCODE_protocol","extraction_protocol_sonication_cycles":"1","chip_antibody_catalog":"ab8895","chip_antibody_provider":"Abcam","chip_antibody_lot":"659352","experiment_type":"Histone H3K4me1","extraction_protocol_type_of_sonicator":"Bioruptor","original_filename":"GSM621679_BI.Skeletal_Muscle.H3K4me1.63.bigWig","Embargo end date":"2011-08-12"},"geolst":["GSM621679"]},{"type":"bigWig","name":"E108 H3K4me1 of skeletal muscle","url":"http://egg.wustl.edu/d/hg19/GSM621686.bigWig","public":true,"mode":1,"qtc":{"anglescale":1,"pr":238,"pg":236,"pb":51,"nr":255,"ng":0,"nb":0,"pth":"rgb(238,236,51)","nth":"#800000","thtype":2,"thmin":0,"thmax":10,"thpercentile":98,"height":5,"summeth":1,"smooth":7},"annotation":["13003","22010","30003","40045","60002","70004"],"custom_annotation":["12","bigWig"],"details":{"collection_method":"surgery"," donor_health_status":"&quot,NL muscle,... PVD - BKA&quot,","molecule":"genomic DNA","disease":"none","tissue_type":"Skeletal muscle","passage_if_expanded":"NA","donor_ethnicity":"white","donor_sex":"Female","biomaterial_type":"Primary Tissue","tissue_depot":"unknown","donor_id":"62","biomaterial_provider":"MGH Pathology","donor_age":"72 years","chip_protocol_bead_type":"Protein A-Sepharose 4B","chip_antibody":"H3K4Me1","chip_protocol_chromatin_amount":"10 million cells","extraction_protocol":"SDS lysis","chip_protocol_antibody_amount":"2-15 ug","chip_protocol_bead_amount":"70 ul bed volume","chip_protocol":"Bernstein_BROAD_ENCODE_protocol","extraction_protocol_sonication_cycles":"1","chip_antibody_catalog":"ab8895","chip_antibody_provider":"Abcam","chip_antibody_lot":"659352","experiment_type":"Histone H3K4me1","extraction_protocol_type_of_sonicator":"Bioruptor","original_filename":"GSM621686_BI.Skeletal_Muscle.H3K4me1.62.bigWig","Embargo end date":"2011-08-12"},"geolst":["GSM621686"]},{"type":"bigWig","name":"E083 H3K4me1 of fetal heart","url":"http://egg.wustl.edu/d/hg19/GSM621429.bigWig","public":true,"mode":1,"qtc":{"anglescale":1,"pr":238,"pg":236,"pb":51,"nr":255,"ng":0,"nb":0,"pth":"rgb(238,236,51)","nth":"#800000","thtype":2,"thmin":0,"thmax":10,"thpercentile":98,"height":5,"summeth":1,"smooth":7},"annotation":["12006","22010","30003","40031","60003","70009"],"custom_annotation":["9","bigWig"],"details":{"collection_method":"surgery"," donor_health_status":"NA","molecule":"genomic DNA","disease":"none","tissue_type":"Fetal lung","passage_if_expanded":"NA","donor_ethnicity":"NA","donor_sex":"Unknown","biomaterial_type":"Primary Tissue","tissue_depot":"lung","donor_id":"H-22727","biomaterial_provider":"UW","donor_age":"101 days","chip_protocol_bead_type":"Protein A-Sepharose 4B","chip_antibody":"H3K4me1","chip_protocol_chromatin_amount":"10 million cells","extraction_protocol":"SDS lysis","chip_protocol_antibody_amount":"2-15 ug","chip_protocol_bead_amount":"70 ul bed volume","chip_protocol":"Bernstein_BROAD_ENCODE_protocol","extraction_protocol_sonication_cycles":"1","chip_antibody_catalog":"ab8895","chip_antibody_provider":"Abcam","chip_antibody_lot":"659352","experiment_type":"Histone H3K4me1","extraction_protocol_type_of_sonicator":"Bioruptor","original_filename":"GSM621429_BI.Fetal_Lung.H3K4me1.UW_H-22727.bigWig","Embargo end date":"2011-08-12"},"geolst":["GSM621429"]},{"type":"bigWig","name":"E083 H3K4me1 of fetal heart","url":"http://egg.wustl.edu/d/hg19/GSM772732_0.bigWig","public":true,"mode":1,"qtc":{"anglescale":1,"pr":238,"pg":236,"pb":51,"nr":255,"ng":0,"nb":0,"pth":"rgb(238,236,51)","nth":"#800000","thtype":2,"thmin":0,"thmax":10,"thpercentile":98,"height":5,"summeth":1,"smooth":7},"annotation":["12006","22010","30003","40171","60001","70009"],"custom_annotation":["9","bigWig"],"details":{"sample_alias":"BioSam 201","sample_common_name":"Fetal Heart","collection_method":"Post-Mortem","donor_health_status":"presumed normal","molecule":"genomic DNA","disease":"presumed normal","tissue_type":"Fetal Heart","donor_ethnicity":"NA","donor_sex":"Male","biomaterial_type":"Primary Tissue","tissue_depot":"Heart","donor_id":"UW H23914","biomaterial_provider":"University of Washington","donor_age":"NA","chip_protocol_bead_type":"Protein A-Sepharose 4B","chip_antibody":"H3K4me1","chip_protocol_chromatin_amount":"10 million cells","extraction_protocol":"SDS lysis","chip_protocol_antibody_amount":"2-15 ug","chip_protocol_bead_amount":"70 ul bed volume","chip_protocol":"Bernstein_BROAD_ENCODE_protocol","extraction_protocol_sonication_cycles":"1","chip_antibody_catalog":"ab8895","chip_antibody_provider":"Abcam","chip_antibody_lot":"659352","experiment_type":"Histone H3K4me1","extraction_protocol_type_of_sonicator":"Bioruptor","original_filename":"GSM772732_BI.Fetal_Heart.H3K4me1.UW_H23914.bigWig"},"geolst":["GSM772732"]},{"type":"bigWig","name":"E083 H3K4me1 of fetal heart","url":"http://egg.wustl.edu/d/hg19/GSM706848_0.bigWig","public":true,"mode":1,"qtc":{"anglescale":1,"pr":238,"pg":236,"pb":51,"nr":255,"ng":0,"nb":0,"pth":"rgb(238,236,51)","nth":"#800000","thtype":2,"thmin":0,"thmax":10,"thpercentile":98,"height":5,"summeth":1,"smooth":7},"annotation":["12006","22010","30003","40080","60001","70009"],"custom_annotation":["9","bigWig"],"details":{"sample_alias":"fHeart.H-23524d105","sample_common_name":"Fetal Heart","molecule":"genomic DNA","disease":"None","biomaterial_provider":"University of Washington, Congenital Defects Lab. Ian Glass","biomaterial_type":"Primary Tissue","tissue_type":"Fetal Heart","tissue_depot":"UW","collection_method":"fetal","donor_id":"H-23524","donor_age":"day 105","donor_health_status":"NA","donor_sex":"Male","donor_ethnicity":"NA","chip_protocol_bead_type":"Protein A-Sepharose 4B","chip_antibody":"H3K4me1","chip_protocol_chromatin_amount":"10 million cells","extraction_protocol":"SDS lysis","chip_protocol_antibody_amount":"2-15 ug","chip_protocol_bead_amount":"70 ul bed volume","chip_protocol":"Bernstein_BROAD_ENCODE_protocol","extraction_protocol_sonication_cycles":"1","chip_antibody_catalog":"ab8895","chip_antibody_provider":"Abcam","chip_antibody_lot":"659352","experiment_type":"Histone H3K4me1","extraction_protocol_type_of_sonicator":"Bioruptor","original_filename":"GSM706848_BI.Fetal_Heart.H3K4me1.H-23524.bigWig"},"geolst":["GSM706848"]},{"type":"bigWig","name":"E104 H3K4me1 of Human Right Atrium Tissue","url":"http://egg.wustl.edu/d/hg19/GSM915335_1.bigWig","public":true,"mode":1,"qtc":{"anglescale":1,"pr":238,"pg":236,"pb":51,"nr":255,"ng":0,"nb":0,"pth":"rgb(238,236,51)","nth":"#800000","thtype":2,"thmin":0,"thmax":10,"thpercentile":98,"height":5,"summeth":1,"smooth":7},"annotation":["13211","22010","30002","40216","60001","70004"],"custom_annotation":["9","bigWig"],"details":{"sample alias":"STL003RA-01","sample common name":"Right Atrium","molecule":"genomic DNA","disease":"None","biomaterial_provider":"Shin Lin, Stanford University","biomaterial_type":"Primary Tissue","tissue_type":"Right Atrium","tissue_depot":"N/A","collection_method":"Autopsy","donor_id":"STL003","donor_age":"34","donor_health_status":"polysubstance abuse (NO diabetes, hypertension, coronary artery disease, cancer)","donor_sex":"Male","donor_ethnicity":"Caucasian","experiment_type":"Histone H3K4me1","extraction_protocol":"See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf","extraction_protocol_type_of_sonicator":"Biorupter","extraction_protocol_sonication_cycles":"80","chip_protocol":"See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf","chip_protocol_chromatin_amount":"500 micrograms","chip_protocol_bead_type":"magnetic anti-rabbit","chip_protocol_bead_amount":"33,500,000","chip_protocol_antibody_amount":"5 micrograms","chip_antibody":"H3K4me1","chip_antibody_provider":"Abcam","chip_antibody_catalog":"ab8895","chip_antibody_lot":"720417","original_filename":"UCSD.Right_Atrium.H3K4me1.STL003.bigWig"},"geolst":["GSM915335"]},{"type":"bigWig","name":"E095 H3K4me1 of Human Left Ventricle Tissue","url":"http://egg.wustl.edu/d/hg19/GSM906404_1.bigWig","public":true,"mode":1,"qtc":{"anglescale":1,"pr":238,"pg":236,"pb":51,"nr":255,"ng":0,"nb":0,"pth":"rgb(238,236,51)","nth":"#800000","thtype":2,"thmin":0,"thmax":10,"thpercentile":98,"height":5,"summeth":1,"smooth":7},"annotation":["13210","22010","30002","40272","60001","70001"],"custom_annotation":["9","bigWig"],"details":{"sample alias":"STL001LV-01","sample common name":"Left Ventricle","molecule":"genomic DNA","disease":"None","biomaterial_provider":"Shin Lin, Stanford University","biomaterial_type":"Primary Tissue","tissue_type":"Left Ventricle","tissue_depot":"N/A","collection_method":"Autopsy","donor_id":"STL001","donor_age":"3","donor_health_status":"healthy, no prior medical history (NO diabetes, hypertension, coronary artery disease, cancer)","donor_sex":"Male","donor_ethnicity":"Caucasian and African American","experiment_type":"Histone H3K4me1","extraction_protocol":"See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf","extraction_protocol_type_of_sonicator":"Biorupter","extraction_protocol_sonication_cycles":"80","chip_protocol":"See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf","chip_protocol_chromatin_amount":"500 micrograms","chip_protocol_bead_type":"magnetic anti-rabbit","chip_protocol_bead_amount":"33,500,000","chip_protocol_antibody_amount":"5 micrograms","chip_antibody":"H3K4me1","chip_antibody_provider":"Abcam","chip_antibody_catalog":"ab8895","chip_antibody_lot":"727417","original_filename":"UCSD.Left_Ventricle.H3K4me1.STL001.bigWig"},"geolst":["GSM906404"]},{"type":"bigWig","name":"E095 H3K4me1 of Human Left Ventricle Tissue","url":"http://egg.wustl.edu/d/hg19/GSM910575_1.bigWig","public":true,"mode":1,"qtc":{"anglescale":1,"pr":238,"pg":236,"pb":51,"nr":255,"ng":0,"nb":0,"pth":"rgb(238,236,51)","nth":"#800000","thtype":2,"thmin":0,"thmax":10,"thpercentile":98,"height":5,"summeth":1,"smooth":7},"annotation":["13210","22010","30002","40216","60001","70004"],"custom_annotation":["9","bigWig"],"details":{"sample alias":"STL003LV-01","sample common name":"Left Ventricle","molecule":"genomic DNA","disease":"None","biomaterial_provider":"Shin Lin, Stanford University","biomaterial_type":"Primary Tissue","tissue_type":"Left Ventricle","tissue_depot":"N/A","collection_method":"Autopsy","donor_id":"STL003","donor_age":"34","donor_health_status":"polysubstance abuse (NO diabetes, hypertension, coronary artery disease, cancer)","donor_sex":"Male","donor_ethnicity":"Caucasian","experiment_type":"Histone H3K4me1","extraction_protocol":"See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf","extraction_protocol_type_of_sonicator":"Biorupter","extraction_protocol_sonication_cycles":"80","chip_protocol":"See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf","chip_protocol_chromatin_amount":"500 micrograms","chip_protocol_bead_type":"magnetic anti-rabbit","chip_protocol_bead_amount":"33,500,000","chip_protocol_antibody_amount":"5 micrograms","chip_antibody":"H3K4me1","chip_antibody_provider":"Abcam","chip_antibody_catalog":"ab8895","chip_antibody_lot":"720417","original_filename":"UCSD.Left_Ventricle.H3K4me1.STL003.bigWig"},"geolst":["GSM910575"]},{"type":"bedGraph","name":"E105 ChIP-Seq Analysis of H3K4me1 in Human Right Ventricle Tissue","url":"http://egg.wustl.edu/d/hg19/GSM1059445_1.gz","public":true,"mode":1,"qtc":{"anglescale":1,"pr":238,"pg":236,"pb":51,"nr":255,"ng":0,"nb":0,"pth":"rgb(238,236,51)","nth":"#800000","thtype":2,"thmin":0,"thmax":10,"thpercentile":98,"height":5,"summeth":1,"smooth":7},"annotation":["13214","22010","30002","40272"],"custom_annotation":["9","bedGraph"],"details":{"sample alias":"STL001RV-01","sample common name":"Right Ventricle","molecule":"genomic DNA","disease":"None","biomaterial_provider":"Shin Lin, Stanford University","biomaterial_type":"Primary Tissue","tissue_type":"Right Ventricle","tissue_depot":"N/A","collection_method":"Autopsy","donor_id":"STL001","donor_age":"3","donor_health_status":"healthy, no prior medical history (NO diabetes, hypertension, coronary artery disease, cancer)","donor_sex":"Male","donor_ethnicity":"Caucasian and African American","experiment_type":"Histone H3K4me1","extraction_protocol":"See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf","extraction_protocol_type_of_sonicator":"Biorupter","extraction_protocol_sonication_cycles":"80","chip_protocol":"See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf","chip_protocol_chromatin_amount":"500 micrograms","chip_protocol_bead_type":"magnetic anti-rabbit","chip_protocol_bead_amount":"33,500,000","chip_protocol_antibody_amount":"5 micrograms","chip_antibody":"H3K4me1","chip_antibody_provider":"Abcam","chip_antibody_catalog":"Ab8895","chip_antibody_lot":"720417","original_filename":"GSM1059445_UCSD.Right_Ventricle.H3K4me1.STL001.wig"},"geolst":["GSM1059445"]},{"type":"bedGraph","name":"E105 ChIP-Seq Analysis of H3K4me1 in Human Right Ventricle Tissue","url":"http://egg.wustl.edu/d/hg19/GSM956022_1.gz","public":true,"mode":1,"qtc":{"anglescale":1,"pr":238,"pg":236,"pb":51,"nr":255,"ng":0,"nb":0,"pth":"rgb(238,236,51)","nth":"#800000","thtype":2,"thmin":0,"thmax":10,"thpercentile":98,"height":5,"summeth":1,"smooth":7},"annotation":["13214","22010","30002","40216"],"custom_annotation":["9","bedGraph"],"details":{"sample alias":"STL003RV-01","sample common name":"Right Ventricle","molecule":"genomic DNA","disease":"None","biomaterial_provider":"Shin Lin, Stanford University","biomaterial_type":"Primary Tissue","tissue_type":"Right Ventricle","tissue_depot":"N/A","collection_method":"Autopsy","donor_id":"STL003","donor_age":"34","donor_health_status":"polysubstance abuse (NO diabetes, hypertension, coronary artery disease, cancer)","donor_sex":"Male","donor_ethnicity":"Caucasian","experiment_type":"Histone H3K4me1","extraction_protocol":"See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf","extraction_protocol_type_of_sonicator":"Biorupter","extraction_protocol_sonication_cycles":"80","chip_protocol":"See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf","chip_protocol_chromatin_amount":"500 micrograms","chip_protocol_bead_type":"magnetic anti-rabbit","chip_protocol_bead_amount":"33,500,000","chip_protocol_antibody_amount":"5 micrograms","chip_antibody":"H3K4me1","chip_antibody_provider":"Abcam","chip_antibody_catalog":"Ab8895","chip_antibody_lot":"720417","original_filename":"GSM956022_UCSD.Right_Ventricle.H3K4me1.STL003.wig"},"geolst":["GSM956022"]},{"type":"bedGraph","name":"E065 ChIP-Seq Analysis of H3K4me1 in Human Aorta Tissue","url":"http://egg.wustl.edu/d/hg19/GSM1013150_1.gz","public":true,"mode":1,"qtc":{"anglescale":1,"pr":238,"pg":236,"pb":51,"nr":255,"ng":0,"nb":0,"pth":"rgb(238,236,51)","nth":"#800000","thtype":2,"thmin":0,"thmax":10,"thpercentile":98,"height":5,"summeth":1,"smooth":7},"annotation":["13217","22010","30002","40216"],"custom_annotation":["9","bedGraph"],"details":{"sample alias":"STL003AO-01","sample common name":"Aorta","molecule":"genomic DNA","disease":"None","biomaterial_provider":"Shin Lin, Stanford University","biomaterial_type":"Primary Tissue","tissue_type":"Aorta","tissue_depot":"N/A","collection_method":"Autopsy","donor_id":"STL003","donor_age":"34","donor_health_status":"polysubstance abuse (NO diabetes, hypertension, coronary artery disease, cancer)","donor_sex":"Male","donor_ethnicity":"Caucasian","experiment_type":"Histone H3K4me1","extraction_protocol":"See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf","extraction_protocol_type_of_sonicator":"Biorupter","extraction_protocol_sonication_cycles":"80","chip_protocol":"See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf","chip_protocol_chromatin_amount":"500 micrograms","chip_protocol_bead_type":"magnetic anti-rabbit","chip_protocol_bead_amount":"33,500,000","chip_protocol_antibody_amount":"5 micrograms","chip_antibody":"H3K4me1","chip_antibody_provider":"Abcam","chip_antibody_catalog":"ab8895","chip_antibody_lot":"720417","original_filename":"GSM1013150_UCSD.Aorta.H3K4me1.STL003.wig"},"geolst":["GSM1013150"]},{"type":"bedGraph","name":"E065 ChIP-Seq Analysis of H3K4me1 in Human Aorta Tissue","url":"http://egg.wustl.edu/d/hg19/GSM1059448_1.gz","public":true,"mode":1,"qtc":{"anglescale":1,"pr":238,"pg":236,"pb":51,"nr":255,"ng":0,"nb":0,"pth":"rgb(238,236,51)","nth":"#800000","thtype":2,"thmin":0,"thmax":10,"thpercentile":98,"height":5,"summeth":1,"smooth":7},"annotation":["13217","22010","30002","40271"],"custom_annotation":["9","bedGraph"],"details":{"sample alias":"STL002AO-01","sample common name":"Aorta","molecule":"genomic DNA","disease":"iron deficiency, bipolar","biomaterial_provider":"Shin Lin, Stanford University","biomaterial_type":"Primary Tissue","tissue_type":"Aorta","tissue_depot":"N/A","collection_method":"Autopsy","donor_id":"STL002","donor_age":"30","donor_health_status":"iron deficiency, bipolar disease (NO diabetes, hypertension, coronary artery disease, cancer)","donor_sex":"Female","donor_ethnicity":"Caucasian","experiment_type":"Histone H3K4me1","extraction_protocol":"See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf","extraction_protocol_type_of_sonicator":"Biorupter","extraction_protocol_sonication_cycles":"80","chip_protocol":"See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf","chip_protocol_chromatin_amount":"500 micrograms","chip_protocol_bead_type":"magnetic anti-rabbit","chip_protocol_bead_amount":"33,500,000","chip_protocol_antibody_amount":"5 micrograms","chip_antibody":"H3K4me1","chip_antibody_provider":"Abcam","chip_antibody_catalog":"Ab8895","chip_antibody_lot":"720417","original_filename":"GSM1059448_UCSD.Aorta.H3K4me1.STL002.wig"},"geolst":["GSM1059448"]},{"type":"bigWig","name":"E078 H3K4me1 of Duodenum Smooth Muscle","url":"http://egg.wustl.edu/d/hg19/GSM772837_0.bigWig","public":true,"mode":1,"qtc":{"anglescale":1,"pr":238,"pg":236,"pb":51,"nr":255,"ng":0,"nb":0,"pth":"rgb(238,236,51)","nth":"#800000","thtype":2,"thmin":0,"thmax":10,"thpercentile":98,"height":5,"summeth":1,"smooth":7},"annotation":["13162","22010","30003","40157","60001","70004"],"custom_annotation":["16","bigWig"],"details":{"sample_alias":"238","sample_common_name":"Duodenum Smooth Muscle","collection_method":"Surgery","donor_health_status":"NL smooth muscle, duodenum rmvd as part of pancr.,VA","molecule":"genomic DNA","disease":"NL smooth muscle, duodenum rmvd as part of pancr.,VA","tissue_type":"Smooth Muscle","donor_ethnicity":"Caucasian","donor_sex":"Male","biomaterial_type":"Primary Tissue","tissue_depot":"Duodenum","donor_id":"160","biomaterial_provider":"MGH","donor_age":"59.0 Years","chip_protocol_bead_type":"Protein A-Sepharose 4B","chip_antibody":"H3K4me1","chip_protocol_chromatin_amount":"0.5 to 3 million cells","extraction_protocol":"cell/nuclei lysis","chip_protocol_antibody_amount":"~1 ug","chip_protocol_bead_amount":"10 ul bed volume","chip_protocol":"Bernstein_BROAD_ENCODE_protocol","extraction_protocol_sonication_cycles":"1","chip_antibody_catalog":"ab8895","chip_antibody_provider":"Abcam","chip_antibody_lot":"659352","experiment_type":"Histone H3K4me1","extraction_protocol_type_of_sonicator":"Branson","original_filename":"GSM772837_BI.Duodenum_Smooth_Muscle.H3K4me1.160"},"geolst":["GSM772837"]},{"type":"bigWig","name":"E078 H3K4me1 of Duodenum Smooth Muscle","url":"http://egg.wustl.edu/d/hg19/GSM916033.bigWig","public":true,"mode":1,"qtc":{"anglescale":1,"pr":238,"pg":236,"pb":51,"nr":255,"ng":0,"nb":0,"pth":"rgb(238,236,51)","nth":"#800000","thtype":2,"thmin":0,"thmax":10,"thpercentile":98,"height":5,"summeth":1,"smooth":7},"annotation":["13162","22010","30003","40182","60001","70004"],"custom_annotation":["16","bigWig"],"details":{"sample_alias":"BioSam 309","sample_common_name":"Duodenum Smooth Muscle","collection_method":"Surgery","donor_health_status":"NL smth muscle,  ddnum rmvd as part of whipple operation  because of autoimmune pancreatitis (type1)","molecule":"genomic DNA","disease":"NL smth muscle,  ddnum rmvd as part of whipple operation  because of autoimmune pancreatitis (type1)","tissue_type":"Smooth Muscle","donor_ethnicity":"Caucasian","donor_sex":"Male","biomaterial_type":"Primary Tissue","tissue_depot":"Duodenum","donor_id":"Donor 174 REMC 28","biomaterial_provider":"MGH","donor_age":"73.0","chip_protocol_bead_type":"Protein A-Sepharose 4B","chip_antibody":"H3K4me1","chip_protocol_chromatin_amount":"0.5 to 3 million cells","extraction_protocol":"cell/nuclei lysis","chip_protocol_antibody_amount":"~1 ug","chip_protocol_bead_amount":"10 ul bed volume","chip_protocol":"Bernstein_BROAD_ENCODE_protocol","extraction_protocol_sonication_cycles":"1","chip_antibody_catalog":"ab8895","chip_antibody_provider":"Abcam","chip_antibody_lot":"659352","experiment_type":"Histone H3K4me1","extraction_protocol_type_of_sonicator":"Branson"},"geolst":["GSM916033"]},{"type":"bigWig","name":"E076 H3K4me1 of Colon Smooth Muscle","url":"http://egg.wustl.edu/d/hg19/GSM772972_0.bigWig","public":true,"mode":1,"qtc":{"anglescale":1,"pr":238,"pg":236,"pb":51,"nr":255,"ng":0,"nb":0,"pth":"rgb(238,236,51)","nth":"#800000","thtype":2,"thmin":0,"thmax":10,"thpercentile":98,"height":5,"summeth":1,"smooth":7},"annotation":["13147","22010","30003","40146","60002","70004"],"custom_annotation":["16","bigWig"],"details":{"sample_alias":"BioSam 156 REMC 18","sample_common_name":"Colon Smooth Muscle","collection_method":"surgery","donor_health_status":"NL smooth muscle, colon rsctn for Adeno CA of cecum","molecule":"genomic DNA","disease":"NL smooth muscle, colon rsctn for Adeno CA of cecum","tissue_type":"smooth muscle","passage_if_expanded":"NA","donor_ethnicity":"caucasian","donor_sex":"Female","biomaterial_type":"Primary Tissue","tissue_depot":"colon","donor_id":"Donor 83 REMC 18","biomaterial_provider":"MGH Pathology","donor_age":"77 years","chip_protocol_bead_type":"Protein A-Sepharose 4B","chip_antibody":"H3K4me1","chip_protocol_chromatin_amount":"0.5 to 3 million cells","extraction_protocol":"cell/nuclei lysis","chip_protocol_antibody_amount":"~1 ug","chip_protocol_bead_amount":"10 ul bed volume","chip_protocol":"Bernstein_BROAD_ENCODE_protocol","extraction_protocol_sonication_cycles":"1","chip_antibody_catalog":"ab8895","chip_antibody_provider":"Abcam","chip_antibody_lot":"659352","experiment_type":"Histone H3K4me1","extraction_protocol_type_of_sonicator":"Branson","original_filename":"GSM772972_BI.Colon_Smooth_Muscle.H3K4me1.Donor_83_REMC_18"},"geolst":["GSM772972"]},{"type":"bigWig","name":"E103 H3K4me1 of rectal smooth muscle","url":"http://egg.wustl.edu/d/hg19/GSM669964.bigWig","public":true,"mode":1,"qtc":{"anglescale":1,"pr":238,"pg":236,"pb":51,"nr":255,"ng":0,"nb":0,"pth":"rgb(238,236,51)","nth":"#800000","thtype":2,"thmin":0,"thmax":10,"thpercentile":98,"height":5,"summeth":1,"smooth":7},"annotation":["13004","22010","30003","40043","60002","70004"],"custom_annotation":["16","bigWig"],"details":{"sample_alias":"39"," sample_common_name":"Rectal Smooth Muscle","collection_method":"surgery","donor_health_status":"normal smooth muscle","molecule":"genomic DNA","disease":"none","tissue_type":"smooth muscle","passage_if_expanded":"NA","donor_ethnicity":"white","donor_sex":"Female","biomaterial_type":"Primary Tissue","tissue_depot":"rectum","donor_id":"30","biomaterial_provider":"MGH Pathology","donor_age":"50","chip_protocol_bead_type":"Protein A-Sepharose 4B","chip_antibody":"H3K4Me1","chip_protocol_chromatin_amount":"10 million cells","extraction_protocol":"SDS lysis","chip_protocol_antibody_amount":"2-15 ug","chip_protocol_bead_amount":"70 ul bed volume","chip_protocol":"Bernstein_BROAD_ENCODE_protocol","extraction_protocol_sonication_cycles":"1","chip_antibody_catalog":"ab8895","chip_antibody_provider":"Abcam","chip_antibody_lot":"151304","experiment_type":"Histone H3K4me1","extraction_protocol_type_of_sonicator":"Bioruptor","original_filename":"GSM669964_BI.Rectal_Smooth_Muscle.H3K4me1.30.bigWig","Embargo end date":"2011-12-31"},"geolst":["GSM669964"]},{"type":"bigWig","name":"E111 H3K4me1 of stomach smooth muscle","url":"http://egg.wustl.edu/d/hg19/GSM621642.bigWig","public":true,"mode":1,"qtc":{"anglescale":1,"pr":238,"pg":236,"pb":51,"nr":255,"ng":0,"nb":0,"pth":"rgb(238,236,51)","nth":"#800000","thtype":2,"thmin":0,"thmax":10,"thpercentile":98,"height":5,"summeth":1,"smooth":7},"annotation":["13002","22010","30003","40047","60002","70004"],"custom_annotation":["16","bigWig"],"details":{"collection_method":"surgery"," donor_health_status":"normal smooth muscle","molecule":"genomic DNA","disease":"none","tissue_type":"smooth muscle","passage_if_expanded":"NA","donor_ethnicity":"white","donor_sex":"Female","biomaterial_type":"Primary Tissue","tissue_depot":"stomach","donor_id":"28","biomaterial_provider":"MGH Pathology","donor_age":"84","chip_protocol_bead_type":"Protein A-Sepharose 4B","chip_antibody":"H3K4Me1","chip_protocol_chromatin_amount":"10 million cells","extraction_protocol":"SDS lysis","chip_protocol_antibody_amount":"2-15 ug","chip_protocol_bead_amount":"70 ul bed volume","chip_protocol":"Bernstein_BROAD_ENCODE_protocol","extraction_protocol_sonication_cycles":"1","chip_antibody_catalog":"ab8895","chip_antibody_provider":"Abcam","chip_antibody_lot":"659352","experiment_type":"Histone H3K4me1","extraction_protocol_type_of_sonicator":"Bioruptor","original_filename":"GSM621642_BI.Stomach_Smooth_Muscle.H3K4me1.28.bigWig","Embargo end date":"2011-08-12"},"geolst":["GSM621642"]},{"type":"bedGraph","name":"E109 ChIP-Seq Analysis of H3K4me1 in Human Small Intestine Tissue","url":"http://egg.wustl.edu/d/hg19/GSM1120350_1.gz","public":true,"mode":1,"qtc":{"anglescale":1,"pr":238,"pg":236,"pb":51,"nr":255,"ng":0,"nb":0,"pth":"rgb(238,236,51)","nth":"#800000","thtype":2,"thmin":0,"thmax":10,"thpercentile":98,"height":5,"summeth":1,"smooth":7},"annotation":["13207","22010","30002","40271"],"custom_annotation":["4","bedGraph"],"details":{"sample common name":"Small Intestine","sra sample accession":"SRS366519","disease":"iron deficiency, bipolar","biomaterial_provider":"Shin Lin, Stanford University","biomaterial_type":"Primary Tissue","tissue_type":"Small Intestine","tissue_depot":"N/A","collection_method":"Autopsy","donor_id":"STL002","donor_age":"30","donor_health_status":"iron deficiency, bipolar disease (NO diabetes, hypertension, coronary artery disease, cancer)","donor_sex":"Female","donor_ethnicity":"Caucasian","experiment_type":"Histone H3K4me1","extraction_protocol":"See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf","extraction_protocol_type_of_sonicator":"Biorupter","extraction_protocol_sonication_cycles":"80","chip_protocol":"See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf","chip_protocol_chromatin_amount":"500 micrograms","chip_protocol_bead_type":"magnetic anti-rabbit","chip_protocol_bead_amount":"33,500,000","chip_protocol_antibody_amount":"5 micrograms","chip_antibody":"H3K4me1","chip_antibody_provider":"Abcam","chip_antibody_catalog":"ab8895","chip_antibody_lot":"720417","original_filename":"GSM1120350_UCSD.Small_Intestine.H3K4me1.STL002.wig"},"geolst":["GSM1120350"]},{"type":"bedGraph","name":"E109 ChIP-Seq Analysis of H3K4me1 in Human Small Bowel Tissue","url":"http://egg.wustl.edu/d/hg19/GSM956019_1.gz","public":true,"mode":1,"qtc":{"anglescale":1,"pr":238,"pg":236,"pb":51,"nr":255,"ng":0,"nb":0,"pth":"rgb(238,236,51)","nth":"#800000","thtype":2,"thmin":0,"thmax":10,"thpercentile":98,"height":5,"summeth":1,"smooth":7},"annotation":["13207","22010","30002","40272"],"custom_annotation":["4","bedGraph"],"details":{"sample alias":"STL001SB-01","sample common name":"Small Intestine","molecule":"genomic DNA","disease":"None","biomaterial_provider":"Shin Lin, Stanford University","biomaterial_type":"Primary Tissue","tissue_type":"Small Intestine","tissue_depot":"N/A","collection_method":"Autopsy","donor_id":"STL001","donor_age":"3","donor_health_status":"healthy, no prior medical history (NO diabetes, hypertension, coronary artery disease, cancer)","donor_sex":"Male","donor_ethnicity":"Caucasian and African American","experiment_type":"Histone H3K4me1","extraction_protocol":"See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf","extraction_protocol_type_of_sonicator":"Biorupter","extraction_protocol_sonication_cycles":"80","chip_protocol":"See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf","chip_protocol_chromatin_amount":"500 micrograms","chip_protocol_bead_type":"magnetic anti-rabbit","chip_protocol_bead_amount":"33,500,000","chip_protocol_antibody_amount":"5 micrograms","chip_antibody":"H3K4me1","chip_antibody_provider":"Abcam","chip_antibody_catalog":"ab8895","chip_antibody_lot":"727417","original_filename":"GSM956019_UCSD.Small_Intestine.H3K4me1.STL001.wig"},"geolst":["GSM956019"]},{"type":"bedGraph","name":"E106 ChIP-Seq Analysis of H3K4me1 in Human Sigmoid Colon Tissue","url":"http://egg.wustl.edu/d/hg19/GSM956020_1.gz","public":true,"mode":1,"qtc":{"anglescale":1,"pr":238,"pg":236,"pb":51,"nr":255,"ng":0,"nb":0,"pth":"rgb(238,236,51)","nth":"#800000","thtype":2,"thmin":0,"thmax":10,"thpercentile":98,"height":5,"summeth":1,"smooth":7},"annotation":["13213","22010","30002","40272"],"custom_annotation":["4","bedGraph"],"details":{"sample alias":"STL001SG-01","sample common name":"Sigmoid Colon","molecule":"genomic DNA","disease":"None","biomaterial_provider":"Shin Lin, Stanford University","biomaterial_type":"Primary Tissue","tissue_type":"Sigmoid Colon","tissue_depot":"N/A","collection_method":"Autopsy","donor_id":"STL001","donor_age":"3","donor_health_status":"healthy, no prior medical history (NO diabetes, hypertension, coronary artery disease, cancer)","donor_sex":"Male","donor_ethnicity":"Caucasian and African American","experiment_type":"Histone H3K4me1","extraction_protocol":"See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf","extraction_protocol_type_of_sonicator":"Biorupter","extraction_protocol_sonication_cycles":"80","chip_protocol":"See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf","chip_protocol_chromatin_amount":"500 micrograms","chip_protocol_bead_type":"magnetic anti-rabbit","chip_protocol_bead_amount":"33,500,000","chip_protocol_antibody_amount":"5 micrograms","chip_antibody":"H3K4me1","chip_antibody_provider":"Abcam","chip_antibody_catalog":"ab8895","chip_antibody_lot":"727417","original_filename":"GSM956020_UCSD.Sigmoid_Colon.H3K4me1.STL001.wig"},"geolst":["GSM956020"]},{"type":"bedGraph","name":"E106 ChIP-Seq Analysis of H3K4me1 in Human Sigmoid Colon Tissue","url":"http://egg.wustl.edu/d/hg19/GSM956023_1.gz","public":true,"mode":1,"qtc":{"anglescale":1,"pr":238,"pg":236,"pb":51,"nr":255,"ng":0,"nb":0,"pth":"rgb(238,236,51)","nth":"#800000","thtype":2,"thmin":0,"thmax":10,"thpercentile":98,"height":5,"summeth":1,"smooth":7},"annotation":["13213","22010","30002","40216"],"custom_annotation":["4","bedGraph"],"details":{"sample alias":"STL003SG-01","sample common name":"Sigmoid Colon","molecule":"genomic DNA","disease":"None","biomaterial_provider":"Shin Lin, Stanford University","biomaterial_type":"Primary Tissue","tissue_type":"Sigmoid Colon","tissue_depot":"N/A","collection_method":"Autopsy","donor_id":"STL003","donor_age":"34","donor_health_status":"polysubstance abuse (NO diabetes, hypertension, coronary artery disease, cancer)","donor_sex":"Male","donor_ethnicity":"Caucasian","experiment_type":"Histone H3K4me1","extraction_protocol":"See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf","extraction_protocol_type_of_sonicator":"Biorupter","extraction_protocol_sonication_cycles":"80","chip_protocol":"See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf","chip_protocol_chromatin_amount":"500 micrograms","chip_protocol_bead_type":"magnetic anti-rabbit","chip_protocol_bead_amount":"33,500,000","chip_protocol_antibody_amount":"5 micrograms","chip_antibody":"H3K4me1","chip_antibody_provider":"Abcam","chip_antibody_catalog":"ab8895","chip_antibody_lot":"720417","original_filename":"GSM956023_UCSD.Sigmoid_Colon.H3K4me1.STL003.wig"},"geolst":["GSM956023"]},{"type":"bigWig","name":"E075 H3K4me1 of colonic mucosa","url":"http://egg.wustl.edu/d/hg19/GSM621670.bigWig","public":true,"mode":1,"qtc":{"anglescale":1,"pr":238,"pg":236,"pb":51,"nr":255,"ng":0,"nb":0,"pth":"rgb(238,236,51)","nth":"#800000","thtype":2,"thmin":0,"thmax":10,"thpercentile":98,"height":5,"summeth":1,"smooth":7},"annotation":["13014","22010","30003","40029","60002","70004"],"custom_annotation":["4","bigWig"],"details":{"collection_method":"surgery"," donor_health_status":"&quot,normal mucosa, adeno. CA of Cecum&quot,","molecule":"genomic DNA","disease":"none","tissue_type":"mucosa","passage_if_expanded":"NA","donor_ethnicity":"white","donor_sex":"Female","biomaterial_type":"Primary Tissue","tissue_depot":"colon","donor_id":"32","biomaterial_provider":"MGH Pathology","donor_age":"73","chip_protocol_bead_type":"Protein A-Sepharose 4B","chip_antibody":"H3K4Me1","chip_protocol_chromatin_amount":"10 million cells","extraction_protocol":"SDS lysis","chip_protocol_antibody_amount":"2-15 ug","chip_protocol_bead_amount":"70 ul bed volume","chip_protocol":"Bernstein_BROAD_ENCODE_protocol","extraction_protocol_sonication_cycles":"1","chip_antibody_catalog":"ab8895","chip_antibody_provider":"Abcam","chip_antibody_lot":"659352","experiment_type":"Histone H3K4me1","extraction_protocol_type_of_sonicator":"Bioruptor","original_filename":"GSM621670_BI.Colonic_Mucosa.H3K4me1.32.bigWig","Embargo end date":"2011-08-12"},"geolst":["GSM621670"]},{"type":"bigWig","name":"E075 H3K4me1 of colonic mucosa","url":"http://egg.wustl.edu/d/hg19/GSM916046.bigWig","public":true,"mode":1,"qtc":{"anglescale":1,"pr":238,"pg":236,"pb":51,"nr":255,"ng":0,"nb":0,"pth":"rgb(238,236,51)","nth":"#800000","thtype":2,"thmin":0,"thmax":10,"thpercentile":98,"height":5,"summeth":1,"smooth":7},"annotation":["13014","22010","30003","40164","60002","70004"],"custom_annotation":["4","bigWig"],"details":{"sample_alias":"BioSam 157 REMC 19","sample_common_name":"Colonic Mucosa","collection_method":"Surgery","donor_health_status":"NL colonic mucosa, colon rmvd as part of abmnl Sarc","molecule":"genomic DNA","disease":"NL colonic mucosa, colon rmvd as part of abmnl Sarc","tissue_type":"Colonic Mucosa","donor_ethnicity":"Caucasian","donor_sex":"Female","biomaterial_type":"Primary Tissue","tissue_depot":"Colon","donor_id":"155","biomaterial_provider":"MGH","donor_age":"56.0 Years","chip_protocol_bead_type":"Protein A-Sepharose 4B","chip_antibody":"H3K4me1","chip_protocol_chromatin_amount":"0.5 to 3 million cells","extraction_protocol":"cell/nuclei lysis","chip_protocol_antibody_amount":"~1 ug","chip_protocol_bead_amount":"10 ul bed volume","chip_protocol":"Bernstein_BROAD_ENCODE_protocol","extraction_protocol_sonication_cycles":"1","chip_antibody_catalog":"ab8895","chip_antibody_provider":"Abcam","chip_antibody_lot":"659352","experiment_type":"Histone H3K4me1","extraction_protocol_type_of_sonicator":"Branson"},"geolst":["GSM916046"]},{"type":"bigWig","name":"E102 H3K4me1 of rectal mucosa","url":"http://egg.wustl.edu/d/hg19/GSM621639.bigWig","public":true,"mode":1,"qtc":{"anglescale":1,"pr":238,"pg":236,"pb":51,"nr":255,"ng":0,"nb":0,"pth":"rgb(238,236,51)","nth":"#800000","thtype":2,"thmin":0,"thmax":10,"thpercentile":98,"height":5,"summeth":1,"smooth":7},"annotation":["13015","22010","30003","40041","60002","70004"],"custom_annotation":["4","bigWig"],"details":{"collection_method":"surgery"," donor_health_status":"normal mucosa","molecule":"genomic DNA","disease":"none","tissue_type":"mucosa","passage_if_expanded":"NA","donor_ethnicity":"white","donor_sex":"Female","biomaterial_type":"Primary Tissue","tissue_depot":"rectum","donor_id":"29","biomaterial_provider":"MGH Pathology","donor_age":"50","chip_protocol_bead_type":"Protein A-Sepharose 4B","chip_antibody":"H3K4Me1","chip_protocol_chromatin_amount":"10 million cells","extraction_protocol":"SDS lysis","chip_protocol_antibody_amount":"2-15 ug","chip_protocol_bead_amount":"70 ul bed volume","chip_protocol":"Bernstein_BROAD_ENCODE_protocol","extraction_protocol_sonication_cycles":"1","chip_antibody_catalog":"ab8895","chip_antibody_provider":"Abcam","chip_antibody_lot":"659352","experiment_type":"Histone H3K4me1","extraction_protocol_type_of_sonicator":"Bioruptor","original_filename":"GSM621639_BI.Rectal_Mucosa.H3K4me1.29.bigWig","Embargo end date":"2011-08-12"},"geolst":["GSM621639"]},{"type":"bigWig","name":"E102 H3K4me1 of rectal mucosa","url":"http://egg.wustl.edu/d/hg19/GSM621659.bigWig","public":true,"mode":1,"qtc":{"anglescale":1,"pr":238,"pg":236,"pb":51,"nr":255,"ng":0,"nb":0,"pth":"rgb(238,236,51)","nth":"#800000","thtype":2,"thmin":0,"thmax":10,"thpercentile":98,"height":5,"summeth":1,"smooth":7},"annotation":["13015","22010","30003","40042","60002","70004"],"custom_annotation":["4","bigWig"],"details":{"collection_method":"surgery"," donor_health_status":"&quot,normal mucosa, diverticular disease&quot,","molecule":"genomic DNA","disease":"none","tissue_type":"mucosa","passage_if_expanded":"NA","donor_ethnicity":"white","donor_sex":"Female","biomaterial_type":"Primary Tissue","tissue_depot":"rectum","donor_id":"31","biomaterial_provider":"MGH Pathology","donor_age":"61","chip_protocol_bead_type":"Protein A-Sepharose 4B","chip_antibody":"H3K4Me1","chip_protocol_chromatin_amount":"10 million cells","extraction_protocol":"SDS lysis","chip_protocol_antibody_amount":"2-15 ug","chip_protocol_bead_amount":"70 ul bed volume","chip_protocol":"Bernstein_BROAD_ENCODE_protocol","extraction_protocol_sonication_cycles":"1","chip_antibody_catalog":"ab8895","chip_antibody_provider":"Abcam","chip_antibody_lot":"659352","experiment_type":"Histone H3K4me1","extraction_protocol_type_of_sonicator":"Bioruptor","original_filename":"GSM621659_BI.Rectal_Mucosa.H3K4me1.31.bigWig","Embargo end date":"2011-08-12"},"geolst":["GSM621659"]},{"type":"bigWig","name":"E110 H3K4me1 of Stomach Mucosa","url":"http://egg.wustl.edu/d/hg19/GSM772907_0.bigWig","public":true,"mode":1,"qtc":{"anglescale":1,"pr":238,"pg":236,"pb":51,"nr":255,"ng":0,"nb":0,"pth":"rgb(238,236,51)","nth":"#800000","thtype":2,"thmin":0,"thmax":10,"thpercentile":98,"height":5,"summeth":1,"smooth":7},"annotation":["13146","22010","30003","40165","60001","70004"],"custom_annotation":["4","bigWig"],"details":{"sample_alias":"235","sample_common_name":"Stomach Mucosa","collection_method":"Surgery","donor_health_status":"NK stomach mucosa, stomach rmvd as part of pancr. CA","molecule":"genomic DNA","disease":"NK stomach mucosa, stomach rmvd as part of pancr. CA","tissue_type":"Stomach Mucosa","donor_ethnicity":"Caucasian","donor_sex":"Male","biomaterial_type":"Primary Tissue","tissue_depot":"Stomach","donor_id":"157","biomaterial_provider":"MGH","donor_age":"59.0 Years","chip_protocol_bead_type":"Protein A-Sepharose 4B","chip_antibody":"H3K4me1","chip_protocol_chromatin_amount":"0.5 to 3 million cells","extraction_protocol":"cell/nuclei lysis","chip_protocol_antibody_amount":"~1 ug","chip_protocol_bead_amount":"10 ul bed volume","chip_protocol":"Bernstein_BROAD_ENCODE_protocol","extraction_protocol_sonication_cycles":"1","chip_antibody_catalog":"ab8895","chip_antibody_provider":"Abcam","chip_antibody_lot":"659352","experiment_type":"Histone H3K4me1","extraction_protocol_type_of_sonicator":"Branson","original_filename":"GSM772907_BI.Stomach_Mucosa.H3K4me1.157"},"geolst":["GSM772907"]},{"type":"bigWig","name":"E077 H3K4me1 of Duodenum Mucosa","url":"http://egg.wustl.edu/d/hg19/GSM916017.bigWig","public":true,"mode":1,"qtc":{"anglescale":1,"pr":238,"pg":236,"pb":51,"nr":255,"ng":0,"nb":0,"pth":"rgb(238,236,51)","nth":"#800000","thtype":2,"thmin":0,"thmax":10,"thpercentile":98,"height":5,"summeth":1,"smooth":7},"annotation":["13163","22010","30003","40167","60001","70004"],"custom_annotation":["4","bigWig"],"details":{"sample_alias":"237","sample_common_name":"Duodenum Mucosa","collection_method":"Surgery","donor_health_status":"presumed normal","molecule":"genomic DNA","disease":"presumed normal","tissue_type":"Duodenum Mucosa","donor_ethnicity":"Caucasian","donor_sex":"Male","biomaterial_type":"Primary Tissue","tissue_depot":"Duodenum","donor_id":"159","biomaterial_provider":"MGH","donor_age":"59.0 Years","chip_protocol_bead_type":"Protein A-Sepharose 4B","chip_antibody":"H3K4me1","chip_protocol_chromatin_amount":"0.5 to 3 million cells","extraction_protocol":"cell/nuclei lysis","chip_protocol_antibody_amount":"~1 ug","chip_protocol_bead_amount":"10 ul bed volume","chip_protocol":"Bernstein_BROAD_ENCODE_protocol","extraction_protocol_sonication_cycles":"1","chip_antibody_catalog":"ab8895","chip_antibody_provider":"Abcam","chip_antibody_lot":"659352","experiment_type":"Histone H3K4me1","extraction_protocol_type_of_sonicator":"Branson"},"geolst":["GSM916017"]},{"type":"bigWig","name":"E079 H3K4me1 of Human Esophagus Tissue","url":"http://egg.wustl.edu/d/hg19/GSM910573_1.bigWig","public":true,"mode":1,"qtc":{"anglescale":1,"pr":238,"pg":236,"pb":51,"nr":255,"ng":0,"nb":0,"pth":"rgb(238,236,51)","nth":"#800000","thtype":2,"thmin":0,"thmax":10,"thpercentile":98,"height":5,"summeth":1,"smooth":7},"annotation":["13216","22010","30002","40216","60001","70004"],"custom_annotation":["4","bigWig"],"details":{"sample alias":"STL003EG-01","sample common name":"Esophagus","molecule":"genomic DNA","disease":"None","biomaterial_provider":"Shin Lin, Stanford University","biomaterial_type":"Primary Tissue","tissue_type":"Esophagus","tissue_depot":"N/A","collection_method":"Autopsy","donor_id":"STL003","donor_age":"34","donor_health_status":"polysubstance abuse (NO diabetes, hypertension, coronary artery disease, cancer)","donor_sex":"Male","donor_ethnicity":"Caucasian","experiment_type":"Histone H3K4me1","extraction_protocol":"See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf","extraction_protocol_type_of_sonicator":"Biorupter","extraction_protocol_sonication_cycles":"80","chip_protocol":"See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf","chip_protocol_chromatin_amount":"500 micrograms","chip_protocol_bead_type":"magnetic anti-rabbit","chip_protocol_bead_amount":"33,500,000","chip_protocol_antibody_amount":"5 micrograms","chip_antibody":"H3K4me1","chip_antibody_provider":"Abcam","chip_antibody_catalog":"ab8895","chip_antibody_lot":"720417","original_filename":"UCSD.Esophagus.H3K4me1.STL003.bigWig"},"geolst":["GSM910573"]},{"type":"bedGraph","name":"E079 ChIP-Seq Analysis of H3K4me1 in Human Esophagus Tissue","url":"http://egg.wustl.edu/d/hg19/GSM1120349_1.gz","public":true,"mode":1,"qtc":{"anglescale":1,"pr":238,"pg":236,"pb":51,"nr":255,"ng":0,"nb":0,"pth":"rgb(238,236,51)","nth":"#800000","thtype":2,"thmin":0,"thmax":10,"thpercentile":98,"height":5,"summeth":1,"smooth":7},"annotation":["13216","22010","30002","40271"],"custom_annotation":["4","bedGraph"],"details":{"sample common name":"Esophagus","sra sample accession":"SRS366515","disease":"iron deficiency, bipolar","biomaterial_provider":"Shin Lin, Stanford University","biomaterial_type":"Primary Tissue","tissue_type":"Esophagus","tissue_depot":"N/A","collection_method":"Autopsy","donor_id":"STL002","donor_age":"30","donor_health_status":"iron deficiency, bipolar disease (NO diabetes, hypertension, coronary artery disease, cancer)","donor_sex":"Female","donor_ethnicity":"Caucasian","experiment_type":"Histone H3K4me1","extraction_protocol":"See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf","extraction_protocol_type_of_sonicator":"Biorupter","extraction_protocol_sonication_cycles":"80","chip_protocol":"See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf","chip_protocol_chromatin_amount":"500 micrograms","chip_protocol_bead_type":"magnetic anti-rabbit","chip_protocol_bead_amount":"33,500,000","chip_protocol_antibody_amount":"5 micrograms","chip_antibody":"H3K4me1","chip_antibody_provider":"Abcam","chip_antibody_catalog":"ab8895","chip_antibody_lot":"720417","original_filename":"GSM1120349_UCSD.Esophagus.H3K4me1.STL002.wig"},"geolst":["GSM1120349"]},{"type":"bigWig","name":"E094 H3K4me1 of Human Gastric Tissue","url":"http://egg.wustl.edu/d/hg19/GSM910574_1.bigWig","public":true,"mode":1,"qtc":{"anglescale":1,"pr":238,"pg":236,"pb":51,"nr":255,"ng":0,"nb":0,"pth":"rgb(238,236,51)","nth":"#800000","thtype":2,"thmin":0,"thmax":10,"thpercentile":98,"height":5,"summeth":1,"smooth":7},"annotation":["13215","22010","30002","40216","60001","70004"],"custom_annotation":["4","bigWig"],"details":{"sample alias":"STL003GA-01","sample common name":"Gastric","molecule":"genomic DNA","disease":"None","biomaterial_provider":"Shin Lin, Stanford University","biomaterial_type":"Primary Tissue","tissue_type":"Gastric","tissue_depot":"N/A","collection_method":"Autopsy","donor_id":"STL003","donor_age":"34","donor_health_status":"polysubstance abuse (NO diabetes, hypertension, coronary artery disease, cancer)","donor_sex":"Male","donor_ethnicity":"Caucasian","experiment_type":"Histone H3K4me1","extraction_protocol":"See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf","extraction_protocol_type_of_sonicator":"Biorupter","extraction_protocol_sonication_cycles":"80","chip_protocol":"See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf","chip_protocol_chromatin_amount":"500 micrograms","chip_protocol_bead_type":"magnetic anti-rabbit","chip_protocol_bead_amount":"33,500,000","chip_protocol_antibody_amount":"5 micrograms","chip_antibody":"H3K4me1","chip_antibody_provider":"Abcam","chip_antibody_catalog":"ab8895","chip_antibody_lot":"720417","original_filename":"UCSD.Gastric.H3K4me1.STL003.bigWig"},"geolst":["GSM910574"]},{"type":"bedGraph","name":"E094 ChIP-Seq Analysis of H3K4me1 in Human Gastric Tissue","url":"http://egg.wustl.edu/d/hg19/GSM1013147_1.gz","public":true,"mode":1,"qtc":{"anglescale":1,"pr":238,"pg":236,"pb":51,"nr":255,"ng":0,"nb":0,"pth":"rgb(238,236,51)","nth":"#800000","thtype":2,"thmin":0,"thmax":10,"thpercentile":98,"height":5,"summeth":1,"smooth":7},"annotation":["13215","22010","30002","40272"],"custom_annotation":["4","bedGraph"],"details":{"sample alias":"STL001GA-01","sample common name":"Gastric","molecule":"genomic DNA","disease":"None","biomaterial_provider":"Shin Lin, Stanford University","biomaterial_type":"Primary Tissue","tissue_type":"Gastric","tissue_depot":"N/A","collection_method":"Autopsy","donor_id":"STL001","donor_age":"3","donor_health_status":"healthy, no prior medical history (NO diabetes, hypertension, coronary artery disease, cancer)","donor_sex":"Male","donor_ethnicity":"Caucasian and African American","experiment_type":"Histone H3K4me1","extraction_protocol":"See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf","extraction_protocol_type_of_sonicator":"Biorupter","extraction_protocol_sonication_cycles":"80","chip_protocol":"See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf","chip_protocol_chromatin_amount":"500 micrograms","chip_protocol_bead_type":"magnetic anti-rabbit","chip_protocol_bead_amount":"33,500,000","chip_protocol_antibody_amount":"5 micrograms","chip_antibody":"H3K4me1","chip_antibody_provider":"Abcam","chip_antibody_catalog":"ab8895","chip_antibody_lot":"720417","original_filename":"GSM1013147_UCSD.Gastric.H3K4me1.STL001.wig"},"geolst":["GSM1013147"]},{"type":"bedGraph","name":"E097 ChIP-Seq Analysis of H3K4me1 in Human Ovary Tissue","url":"http://egg.wustl.edu/d/hg19/GSM1013148_1.gz","public":true,"mode":1,"qtc":{"anglescale":1,"pr":238,"pg":236,"pb":51,"nr":255,"ng":0,"nb":0,"pth":"rgb(238,236,51)","nth":"#800000","thtype":2,"thmin":0,"thmax":10,"thpercentile":98,"height":5,"summeth":1,"smooth":7},"annotation":["13302","22010","30002","40271"],"custom_annotation":["15","bedGraph"],"details":{"sample alias":"STL002OV-01","sample common name":"Ovary","molecule":"genomic DNA","disease":"iron deficiency, bipolar","biomaterial_provider":"Shin Lin, Stanford University","biomaterial_type":"Primary Tissue","tissue_type":"Ovary","tissue_depot":"N/A","collection_method":"Autopsy","donor_id":"STL002","donor_age":"30","donor_health_status":"iron deficiency, bipolar disease (NO diabetes, hypertension, coronary artery disease, cancer)","donor_sex":"Female","donor_ethnicity":"Caucasian","experiment_type":"Histone H3K4me1","extraction_protocol":"See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf","extraction_protocol_type_of_sonicator":"Biorupter","extraction_protocol_sonication_cycles":"80","chip_protocol":"See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf","chip_protocol_chromatin_amount":"500 micrograms","chip_protocol_bead_type":"magnetic anti-rabbit","chip_protocol_bead_amount":"33,500,000","chip_protocol_antibody_amount":"5 micrograms","chip_antibody":"H3K4me1","chip_antibody_provider":"Abcam","chip_antibody_catalog":"ab8895","chip_antibody_lot":"720417","original_filename":"GSM1013148_UCSD.Ovary.H3K4me1.STL002.wig"},"geolst":["GSM1013148"]},{"type":"bigWig","name":"E087 H3K4me1 of pancreatic islets","url":"http://egg.wustl.edu/d/hg19/GSM537642.bigWig","public":true,"mode":1,"qtc":{"anglescale":1,"pr":238,"pg":236,"pb":51,"nr":255,"ng":0,"nb":0,"pth":"rgb(238,236,51)","nth":"#800000","thtype":2,"thmin":0,"thmax":10,"thpercentile":98,"height":5,"summeth":1,"smooth":7},"annotation":["13171","22010","30003","40050","60001","70009"],"custom_annotation":["15","bigWig"],"details":{"molecule":"genomic DNA"," disease":"none","biomaterial_provider":"Islet Cell Resource Center","biomaterial_type":"Primary Cell","cell_type":"Pancreatic Islets","markers":"none","donor_id":"pancreatic islets normal_3/27/09","donor_age":"NA","donor_health_status":"none","donor_sex":"Male","donor_ethnicity":"NA","passage_if_expanded":"not passaged","experiment_type":"Histone H3K4me1","extraction_protocol":"SDS lysis","extraction_protocol_type_of_sonicator":"Bioruptor","extraction_protocol_sonication_cycles":"1","chip_protocol":"Bernstein_BROAD_ENCODE_protocol","chip_protocol_chromatin_amount":"10 million cells","chip_protocol_bead_type":"Protein A-Sepharose 4B","chip_protocol_bead_amount":"70 ul bed volume","chip_protocol_antibody_amount":"2-15 ug","chip_antibody":"H3K4Me1","chip_antibody_provider":"Abcam","chip_antibody_catalog":"ab8895","chip_antibody_lot":"383111","original_filename":"GSM537642_BI.Pancreatic_Islets.H3K4me1.pancreatic_islets_normal_3_27_09.bigWig","Embargo end date":"2011-01-28"},"geolst":["GSM537642"]},{"type":"bigWig","name":"E066 H3K4me1 of adult liver","url":"http://egg.wustl.edu/d/hg19/GSM537706.bigWig","public":true,"mode":1,"qtc":{"anglescale":1,"pr":238,"pg":236,"pb":51,"nr":255,"ng":0,"nb":0,"pth":"rgb(238,236,51)","nth":"#800000","thtype":2,"thmin":0,"thmax":10,"thpercentile":98,"height":5,"summeth":1,"smooth":7},"annotation":["13010","22010","30003","40034","60002","70009"],"custom_annotation":["15","bigWig"],"details":{"molecule":"genomic DNA"," disease":"none","biomaterial_provider":"MGH Pathology","biomaterial_type":"Primary Tissue","tissue_type":"liver","tissue_depot":"liver","collection_method":"surgery","donor_id":"3.0","donor_age":"NA","donor_health_status":"none","donor_sex":"Female","donor_ethnicity":"NA","experiment_type":"Histone H3K4me1","extraction_protocol":"SDS lysis","extraction_protocol_type_of_sonicator":"Bioruptor","extraction_protocol_sonication_cycles":"1","chip_protocol":"Bernstein_BROAD_ENCODE_protocol","chip_protocol_chromatin_amount":"10 million cells","chip_protocol_bead_type":"Protein A-Sepharose 4B","chip_protocol_bead_amount":"70 ul bed volume","chip_protocol_antibody_amount":"2-15 ug","chip_antibody":"H3K4Me1","chip_antibody_provider":"Abcam","chip_antibody_catalog":"ab8895","chip_antibody_lot":"151302","original_filename":"GSM537706_BI.Adult_Liver.H3K4me1.3.bigWig","Embargo end date":"2011-01-28"},"geolst":["GSM537706"]},{"type":"bigWig","name":"E066 H3K4me1 of adult liver","url":"http://egg.wustl.edu/d/hg19/GSM621654.bigWig","public":true,"mode":1,"qtc":{"anglescale":1,"pr":238,"pg":236,"pb":51,"nr":255,"ng":0,"nb":0,"pth":"rgb(238,236,51)","nth":"#800000","thtype":2,"thmin":0,"thmax":10,"thpercentile":98,"height":5,"summeth":1,"smooth":7},"annotation":["13010","22010","30003","40061","60003","70009"],"custom_annotation":["15","bigWig"],"details":{"collection_method":"surgery"," donor_health_status":"NA","molecule":"genomic DNA","disease":"none","tissue_type":"Adult Liver","passage_if_expanded":"NA","donor_ethnicity":"NA","donor_sex":"Unknown","biomaterial_type":"Primary Tissue","tissue_depot":"liver","donor_id":"5","biomaterial_provider":"MGH Pathology","donor_age":"NA","chip_protocol_bead_type":"Protein A-Sepharose 4B","chip_antibody":"H3K4Me1","chip_protocol_chromatin_amount":"10 million cells","extraction_protocol":"SDS lysis","chip_protocol_antibody_amount":"2-15 ug","chip_protocol_bead_amount":"70 ul bed volume","chip_protocol":"Bernstein_BROAD_ENCODE_protocol","extraction_protocol_sonication_cycles":"1","chip_antibody_catalog":"ab8895","chip_antibody_provider":"Abcam","chip_antibody_lot":"659352","experiment_type":"Histone H3K4me1","extraction_protocol_type_of_sonicator":"Bioruptor","original_filename":"GSM621654_BI.Adult_Liver.H3K4me1.5.bigWig","Embargo end date":"2011-08-12"},"geolst":["GSM621654"]},{"type":"bigWig","name":"E066 H3K4me1 of adult liver","url":"http://egg.wustl.edu/d/hg19/GSM669972.bigWig","public":true,"mode":1,"qtc":{"anglescale":1,"pr":238,"pg":236,"pb":51,"nr":255,"ng":0,"nb":0,"pth":"rgb(238,236,51)","nth":"#800000","thtype":2,"thmin":0,"thmax":10,"thpercentile":98,"height":5,"summeth":1,"smooth":7},"annotation":["13010","22010","30003","40036","60003","70009"],"custom_annotation":["15","bigWig"],"details":{"sample_alias":"4"," sample_common_name":"Adult Liver","collection_method":"surgery","donor_health_status":"NA","molecule":"genomic DNA","disease":"none","tissue_type":"Adult Liver","passage_if_expanded":"NA","donor_ethnicity":"NA","donor_sex":"Unknown","biomaterial_type":"Primary Tissue","tissue_depot":"liver","donor_id":"4","biomaterial_provider":"MGH Pathology","donor_age":"NA","chip_protocol_bead_type":"Protein A-Sepharose 4B","chip_antibody":"H3K4Me1","chip_protocol_chromatin_amount":"10 million cells","extraction_protocol":"SDS lysis","chip_protocol_antibody_amount":"2-15 ug","chip_protocol_bead_amount":"70 ul bed volume","chip_protocol":"Bernstein_BROAD_ENCODE_protocol","extraction_protocol_sonication_cycles":"1","chip_antibody_catalog":"ab8895","chip_antibody_provider":"Abcam","chip_antibody_lot":"151304","experiment_type":"Histone H3K4me1","extraction_protocol_type_of_sonicator":"Bioruptor","original_filename":"GSM669972_BI.Adult_Liver.H3K4me1.4.bigWig","Embargo end date":"2011-12-31"},"geolst":["GSM669972"]},{"type":"bedGraph","name":"E066 ChIP-Seq Analysis of H3K4me1 in Human Liver Tissue","url":"http://egg.wustl.edu/d/hg19/GSM1059451_1.gz","public":true,"mode":1,"qtc":{"anglescale":1,"pr":238,"pg":236,"pb":51,"nr":255,"ng":0,"nb":0,"pth":"rgb(238,236,51)","nth":"#800000","thtype":2,"thmin":0,"thmax":10,"thpercentile":98,"height":5,"summeth":1,"smooth":7},"annotation":["13010","22010","30002","40281"],"custom_annotation":["15","bedGraph"],"details":{"sample alias":"STL011LI-01","sample common name":"Adult Liver","molecule":"genomic DNA","disease":"coronary artery disease","biomaterial_provider":"Shin Lin, Stanford University","biomaterial_type":"Primary Tissue","tissue_type":"Liver","tissue_depot":"N/A","collection_method":"Autopsy","donor_id":"STL011","donor_age":"32","donor_health_status":"coronary artery disease. No history of hypertension or diabetes.","donor_sex":"Male","donor_ethnicity":"Caucasian","experiment_type":"Histone H3K4me1","extraction_protocol":"See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf","extraction_protocol_type_of_sonicator":"Biorupter","extraction_protocol_sonication_cycles":"80","chip_protocol":"See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf","chip_protocol_chromatin_amount":"500 micrograms","chip_protocol_bead_type":"magnetic anti-rabbit","chip_protocol_bead_amount":"33,500,000","chip_protocol_antibody_amount":"5 micrograms","chip_antibody":"H3K4me1","chip_antibody_provider":"Abcam","chip_antibody_catalog":"ab8895","chip_antibody_lot":"720417","original_filename":"GSM1059451_UCSD.Adult_Liver.H3K4me1.STL011.wig"},"geolst":["GSM1059451"]},{"type":"bigWig","name":"E098 H3K4me1 of Human Pancreas Tissue","url":"http://egg.wustl.edu/d/hg19/GSM910576_1.bigWig","public":true,"mode":1,"qtc":{"anglescale":1,"pr":238,"pg":236,"pb":51,"nr":255,"ng":0,"nb":0,"pth":"rgb(238,236,51)","nth":"#800000","thtype":2,"thmin":0,"thmax":10,"thpercentile":98,"height":5,"summeth":1,"smooth":7},"annotation":["13208","22010","30002","40216","60001","70004"],"custom_annotation":["15","bigWig"],"details":{"sample alias":"STL003PA-01","sample common name":"Pancreas","molecule":"genomic DNA","disease":"None","biomaterial_provider":"Shin Lin, Stanford University","biomaterial_type":"Primary Tissue","tissue_type":"Pancreas","tissue_depot":"N/A","collection_method":"Autopsy","donor_id":"STL003","donor_age":"34","donor_health_status":"polysubstance abuse (NO diabetes, hypertension, coronary artery disease, cancer)","donor_sex":"Male","donor_ethnicity":"Caucasian","experiment_type":"Histone H3K4me1","extraction_protocol":"See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf","extraction_protocol_type_of_sonicator":"Biorupter","extraction_protocol_sonication_cycles":"80","chip_protocol":"See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf","chip_protocol_chromatin_amount":"500 micrograms","chip_protocol_bead_type":"magnetic anti-rabbit","chip_protocol_bead_amount":"33,500,000","chip_protocol_antibody_amount":"5 micrograms","chip_antibody":"H3K4me1","chip_antibody_provider":"Abcam","chip_antibody_catalog":"ab8895","chip_antibody_lot":"720417","original_filename":"UCSD.Pancreas.H3K4me1.STL003.bigWig"},"geolst":["GSM910576"]},{"type":"bedGraph","name":"E098 ChIP-Seq Analysis of H3K4me1 in Human Pancreas Tissue","url":"http://egg.wustl.edu/d/hg19/GSM1013149_1.gz","public":true,"mode":1,"qtc":{"anglescale":1,"pr":238,"pg":236,"pb":51,"nr":255,"ng":0,"nb":0,"pth":"rgb(238,236,51)","nth":"#800000","thtype":2,"thmin":0,"thmax":10,"thpercentile":98,"height":5,"summeth":1,"smooth":7},"annotation":["13208","22010","30002","40271"],"custom_annotation":["15","bedGraph"],"details":{"sample alias":"STL002PA-01","sample common name":"Pancreas","molecule":"genomic DNA","disease":"iron deficiency, bipolar","biomaterial_provider":"Shin Lin, Stanford University","biomaterial_type":"Primary Tissue","tissue_type":"Pancreas","tissue_depot":"N/A","collection_method":"Autopsy","donor_id":"STL002","donor_age":"30","donor_health_status":"iron deficiency, bipolar disease (NO diabetes, hypertension, coronary artery disease, cancer)","donor_sex":"Female","donor_ethnicity":"Caucasian","experiment_type":"Histone H3K4me1","extraction_protocol":"See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf","extraction_protocol_type_of_sonicator":"Biorupter","extraction_protocol_sonication_cycles":"80","chip_protocol":"See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf","chip_protocol_chromatin_amount":"500 micrograms","chip_protocol_bead_type":"magnetic anti-rabbit","chip_protocol_bead_amount":"33,500,000","chip_protocol_antibody_amount":"5 micrograms","chip_antibody":"H3K4me1","chip_antibody_provider":"Abcam","chip_antibody_catalog":"ab8895","chip_antibody_lot":"720417","original_filename":"GSM1013149_UCSD.Pancreas.H3K4me1.STL002.wig"},"geolst":["GSM1013149"]},{"type":"bedGraph","name":"E096 ChIP-Seq Analysis of H3K4me1 in Human Lung Tissue","url":"http://egg.wustl.edu/d/hg19/GSM1059443_1.gz","public":true,"mode":1,"qtc":{"anglescale":1,"pr":238,"pg":236,"pb":51,"nr":255,"ng":0,"nb":0,"pth":"rgb(238,236,51)","nth":"#800000","thtype":2,"thmin":0,"thmax":10,"thpercentile":98,"height":5,"summeth":1,"smooth":7},"annotation":["13301","22010","30002","40272"],"custom_annotation":["15","bedGraph"],"details":{"sample alias":"STL001LG-01","sample common name":"Lung","molecule":"genomic DNA","disease":"None","biomaterial_provider":"Shin Lin, Stanford University","biomaterial_type":"Primary Tissue","tissue_type":"Lung","tissue_depot":"N/A","collection_method":"Autopsy","donor_id":"STL001","donor_age":"3","donor_health_status":"healthy, no prior medical history (NO diabetes, hypertension, coronary artery disease, cancer)","donor_sex":"Male","donor_ethnicity":"Caucasian and African American","experiment_type":"Histone H3K4me1","extraction_protocol":"See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf","extraction_protocol_type_of_sonicator":"Biorupter","extraction_protocol_sonication_cycles":"80","chip_protocol":"See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf","chip_protocol_chromatin_amount":"500 micrograms","chip_protocol_bead_type":"magnetic anti-rabbit","chip_protocol_bead_amount":"33,500,000","chip_protocol_antibody_amount":"5 micrograms","chip_antibody":"H3K4me1","chip_antibody_provider":"Abcam","chip_antibody_catalog":"Ab8895","chip_antibody_lot":"720417","original_filename":"GSM1059443_UCSD.Lung.H3K4me1.STL001.wig"},"geolst":["GSM1059443"]},{"type":"bigWig","name":"E113 H3K4me1 of Human Spleen Tissue","url":"http://egg.wustl.edu/d/hg19/GSM910577_1.bigWig","public":true,"mode":1,"qtc":{"anglescale":1,"pr":238,"pg":236,"pb":51,"nr":255,"ng":0,"nb":0,"pth":"rgb(238,236,51)","nth":"#800000","thtype":2,"thmin":0,"thmax":10,"thpercentile":98,"height":5,"summeth":1,"smooth":7},"annotation":["13205","22010","30002","40216","60001","70004"],"custom_annotation":["15","bigWig"],"details":{"sample alias":"STL003SX-01","sample common name":"Spleen","molecule":"genomic DNA","disease":"None","biomaterial_provider":"Shin Lin, Stanford University","biomaterial_type":"Primary Tissue","tissue_type":"Spleen","tissue_depot":"N/A","collection_method":"Autopsy","donor_id":"STL003","donor_age":"34","donor_health_status":"polysubstance abuse (NO diabetes, hypertension, coronary artery disease, cancer)","donor_sex":"Male","donor_ethnicity":"Caucasian","experiment_type":"Histone H3K4me1","extraction_protocol":"See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf","extraction_protocol_type_of_sonicator":"Biorupter","extraction_protocol_sonication_cycles":"80","chip_protocol":"See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf","chip_protocol_chromatin_amount":"500 micrograms","chip_protocol_bead_type":"magnetic anti-rabbit","chip_protocol_bead_amount":"33,500,000","chip_protocol_antibody_amount":"5 micrograms","chip_antibody":"H3K4me1","chip_antibody_provider":"Abcam","chip_antibody_catalog":"ab8895","chip_antibody_lot":"720417","original_filename":"UCSD.Spleen.H3K4me1.STL003.bigWig"},"geolst":["GSM910577"]},{"type":"bedGraph","name":"E113 ChIP-Seq Analysis of H3K4me1 in Human Spleen Tissue","url":"http://egg.wustl.edu/d/hg19/GSM1120351_1.gz","public":true,"mode":1,"qtc":{"anglescale":1,"pr":238,"pg":236,"pb":51,"nr":255,"ng":0,"nb":0,"pth":"rgb(238,236,51)","nth":"#800000","thtype":2,"thmin":0,"thmax":10,"thpercentile":98,"height":5,"summeth":1,"smooth":7},"annotation":["13205","22010","30002","40271"],"custom_annotation":["15","bedGraph"],"details":{"sample common name":"Spleen","sra sample accession":"SRS366520","disease":"iron deficiency, bipolar","biomaterial_provider":"Shin Lin, Stanford University","biomaterial_type":"Primary Tissue","tissue_type":"Spleen","tissue_depot":"N/A","collection_method":"Autopsy","donor_id":"STL002","donor_age":"30","donor_health_status":"iron deficiency, bipolar disease (NO diabetes, hypertension, coronary artery disease, cancer)","donor_sex":"Female","donor_ethnicity":"Caucasian","experiment_type":"Histone H3K4me1","extraction_protocol":"See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf","extraction_protocol_type_of_sonicator":"Biorupter","extraction_protocol_sonication_cycles":"80","chip_protocol":"See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf","chip_protocol_chromatin_amount":"500 micrograms","chip_protocol_bead_type":"magnetic anti-rabbit","chip_protocol_bead_amount":"33,500,000","chip_protocol_antibody_amount":"5 micrograms","chip_antibody":"H3K4me1","chip_antibody_provider":"Abcam","chip_antibody_catalog":"ab8895","chip_antibody_lot":"720417","original_filename":"GSM1120351_UCSD.Spleen.H3K4me1.STL002.wig"},"geolst":["GSM1120351"]},{"type":"bigWig","name":"E128 H3K4me1 of Human Lung Tissue","url":"http://egg.wustl.edu/d/hg19/GSM910572_1.bigWig","public":true,"mode":1,"qtc":{"anglescale":1,"pr":238,"pg":236,"pb":51,"nr":255,"ng":0,"nb":0,"pth":"rgb(238,236,51)","nth":"#800000","thtype":2,"thmin":0,"thmax":10,"thpercentile":98,"height":5,"summeth":1,"smooth":7},"annotation":["13057","22010","30002","40271","60002","70004"],"custom_annotation":["5","bigWig"],"details":{"sample alias":"STL002LG-01","sample common name":"Lung","molecule":"genomic DNA","disease":"iron deficiency, bipolar","biomaterial_provider":"Shin Lin, Stanford University","biomaterial_type":"Primary Tissue","tissue_type":"Lung","tissue_depot":"N/A","collection_method":"Autopsy","donor_id":"STL002","donor_age":"30","donor_health_status":"iron deficiency, bipolar disease (NO diabetes, hypertension, coronary artery disease, cancer)","donor_sex":"Female","donor_ethnicity":"Caucasian","experiment_type":"Histone H3K4me1","extraction_protocol":"See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf","extraction_protocol_type_of_sonicator":"Biorupter","extraction_protocol_sonication_cycles":"80","chip_protocol":"See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf","chip_protocol_chromatin_amount":"500 micrograms","chip_protocol_bead_type":"magnetic anti-rabbit","chip_protocol_bead_amount":"33,500,000","chip_protocol_antibody_amount":"5 micrograms","chip_antibody":"H3K4me1","chip_antibody_provider":"Abcam","chip_antibody_catalog":"ab8895","chip_antibody_lot":"720417","original_filename":"UCSD.Lung.H3K4me1.STL002.bigWig"},"geolst":["GSM910572"]},{"type":"native_track","list":[{"name":"refGene","mode":3,"qtc":{"anglescale":1,"pr":0,"pg":77,"pb":0,"nr":0,"ng":0,"nb":230,"pth":"#800000","nth":"#000099","thtype":0,"thmin":0,"thmax":10,"thpercentile":95,"height":50,"summeth":1,"textcolor":"rgb(0,0,0)","fontsize":"8pt","fontfamily":"sans-serif","fontbold":false,"bedcolor":"rgb(0,77,153)"}}]},{"type":"coordinate_override","coord":"chr9,34752444,chr9,38668535"},{"type":"metadata","vocabulary":{"Roadmap Sample Category":[1,2,3,4,5,6,7,8,9,10,11,12,13,14,15,16,17,18,19,20],"Data format":["BED","bigWig","bedGraph","interaction","categorical","methylC","annotation","BAM"]},"show":["Roadmap Sample Category"],"termname":{"1":"Adipose","2":"B-cell","3":"Brain","4":"Digestive","5":"ENCODE","6":"ES-deriv","7":"ESC","8":"Epithelial","9":"Heart","10":"IMR90","11":"Mesench","12":"Muscle","13":"Myosat","14":"Neurosph","15":"Other","16":"Sm. Muscle","17":"T-cell","18":"Thymus","19":"Whole Blood","20":"iPSC"},"termcolor":{"1":"#AF5B39","2":"#678C69","3":"#C5912B","4":"#C58DAA","5":"#000000","6":"#4178AE","7":"#924965","8":"#FF9D0C","9":"#D56F80","10":"#E41A1C","11":"#B65C73","12":"#C2655D","13":"#E67326","14":"#FFD924","15":"#999999","16":"#F182BC","17":"#55A354","18":"#DAB92E","19":"#459D70","20":"#69608A"},"termdesc":{}}]