[{"type":"hammock","name":"Ensembl Gene Track Relase 85","url":"http://wangftp.wustl.edu/~yhou/datahub/danRer10/Danio_rerio.GRCz10.85.hammock.gz","mode":3,"qtc":{"anglescale":1,"pr":255,"pg":0,"pb":0,"nr":0,"ng":0,"nb":230,"pth":"#800000","nth":"#000099","thtype":0,"thmin":0,"thmax":10,"thpercentile":95,"height":50,"summeth":1,"textcolor":"#000000","fontsize":"8pt","fontfamily":"sans-serif","fontbold":false,"bedcolor":"#336666"},"metadata":{},"categories":{"1":["protein-coding","rgb(0,60,179)"],"2":["non-coding","rgb(0,128,0)"],"3":["pseudogene","rgb(230,0,172)"],"4":["misc","rgb(255,0,0)"],"-1":["no information","transparent"]}},{"tracks":{"forward":{"CG":{"color":"#c80000","bg":"#d9d9d9","url":"http://wangftp.wustl.edu/~hlee/datahub/danRer10/FinRegeneration/MethylC/WangT_MethylC_01_4dpaGFPpo_rep1.CG.bedGraph.gz"},"ReadDepth":{"color":"#525252","url":"http://wangftp.wustl.edu/~hlee/datahub/danRer10/FinRegeneration/MethylC/WangT_MethylC_01_4dpaGFPpo_rep1.CG.cov.bedGraph.gz"}}},"type":"methylc","name":"4dpaGFPpo MethylC-seq rep1","mode":1,"qtc":{"height":39},"metadata":{"md1":["1","11"]},"group":1},{"tracks":{"forward":{"CG":{"color":"#c80000","bg":"#d9d9d9","url":"http://wangftp.wustl.edu/~hlee/datahub/danRer10/FinRegeneration/MethylC/WangT_MethylC_02_4dpaGFPne_rep1.CG.bedGraph.gz"},"ReadDepth":{"color":"#525252","url":"http://wangftp.wustl.edu/~hlee/datahub/danRer10/FinRegeneration/MethylC/WangT_MethylC_02_4dpaGFPne_rep1.CG.cov.bedGraph.gz"}}},"type":"methylc","name":"4dpaGFPne MethylC-seq rep1","mode":1,"qtc":{"height":39},"metadata":{"md1":["1","12"]},"group":1},{"tracks":{"forward":{"CG":{"color":"#c80000","bg":"#d9d9d9","url":"http://wangftp.wustl.edu/~hlee/datahub/danRer10/FinRegeneration/MethylC/WangT_MethylC_03_0dpaGFPpo_rep1.CG.bedGraph.gz"},"ReadDepth":{"color":"#525252","url":"http://wangftp.wustl.edu/~hlee/datahub/danRer10/FinRegeneration/MethylC/WangT_MethylC_03_0dpaGFPpo_rep1.CG.cov.bedGraph.gz"}}},"type":"methylc","name":"0dpaGFPpo MethylC-seq rep1","mode":1,"qtc":{"height":39},"metadata":{"md1":["1","13"]},"group":1},{"tracks":{"forward":{"CG":{"color":"#c80000","bg":"#d9d9d9","url":"http://wangftp.wustl.edu/~hlee/datahub/danRer10/FinRegeneration/MethylC/WangT_MethylC_04_0dpaGFPne_rep1.CG.bedGraph.gz"},"ReadDepth":{"color":"#525252","url":"http://wangftp.wustl.edu/~hlee/datahub/danRer10/FinRegeneration/MethylC/WangT_MethylC_04_0dpaGFPne_rep1.CG.cov.bedGraph.gz"}}},"type":"methylc","name":"0dpaGFPne MethylC-seq rep1","mode":1,"qtc":{"height":39},"metadata":{"md1":["1","14"]},"group":1},{"tracks":{"forward":{"CG":{"color":"#c80000","bg":"#d9d9d9","url":"http://wangftp.wustl.edu/~hlee/datahub/danRer10/FinRegeneration/MethylC/WangT_MethylC_05_4dpaGFPpo_rep2.CG.bedGraph.gz"},"ReadDepth":{"color":"#525252","url":"http://wangftp.wustl.edu/~hlee/datahub/danRer10/FinRegeneration/MethylC/WangT_MethylC_05_4dpaGFPpo_rep2.CG.cov.bedGraph.gz"}}},"type":"methylc","name":"4dpaGFPpo MethylC-seq rep2","mode":1,"qtc":{"height":39},"metadata":{"md1":["1","11"]},"group":1},{"tracks":{"forward":{"CG":{"color":"#c80000","bg":"#d9d9d9","url":"http://wangftp.wustl.edu/~hlee/datahub/danRer10/FinRegeneration/MethylC/WangT_MethylC_06_4dpaGFPne_rep2.CG.bedGraph.gz"},"ReadDepth":{"color":"#525252","url":"http://wangftp.wustl.edu/~hlee/datahub/danRer10/FinRegeneration/MethylC/WangT_MethylC_06_4dpaGFPne_rep2.CG.cov.bedGraph.gz"}}},"type":"methylc","name":"4dpaGFPne MethylC-seq rep2","mode":1,"qtc":{"height":39},"metadata":{"md1":["1","12"]},"group":1},{"tracks":{"forward":{"CG":{"color":"#c80000","bg":"#d9d9d9","url":"http://wangftp.wustl.edu/~hlee/datahub/danRer10/FinRegeneration/MethylC/WangT_MethylC_07_0dpaGFPpo_rep2.CG.bedGraph.gz"},"ReadDepth":{"color":"#525252","url":"http://wangftp.wustl.edu/~hlee/datahub/danRer10/FinRegeneration/MethylC/WangT_MethylC_07_0dpaGFPpo_rep2.CG.cov.bedGraph.gz"}}},"type":"methylc","name":"0dpaGFPpo MethylC-seq rep2","mode":1,"qtc":{"height":39},"metadata":{"md1":["1","13"]},"group":1},{"tracks":{"forward":{"CG":{"color":"#c80000","bg":"#d9d9d9","url":"http://wangftp.wustl.edu/~hlee/datahub/danRer10/FinRegeneration/MethylC/WangT_MethylC_08_0dpaGFPne_rep2.CG.bedGraph.gz"},"ReadDepth":{"color":"#525252","url":"http://wangftp.wustl.edu/~hlee/datahub/danRer10/FinRegeneration/MethylC/WangT_MethylC_08_0dpaGFPne_rep2.CG.cov.bedGraph.gz"}}},"type":"methylc","name":"0dpaGFPne MethylC-seq rep2","mode":1,"qtc":{"height":39},"metadata":{"md1":["1","14"]},"group":1},{"type":"bedgraph","name":"ATAC_4dpa_GFPpo_rep1","url":"http://wangftp.wustl.edu/~yhou/datahub/danRer10/2014_ATAC/S1_duprm_Mrm.bdg.gz","mode":1,"qtc":{"anglescale":1,"pr":0,"pg":77,"pb":0,"nr":255,"ng":0,"nb":0,"pth":"rgb(0,53,0)","nth":"#800000","thtype":1,"thmin":0,"thmax":150,"thpercentile":90,"height":20,"summeth":1},"metadata":{"md1":["3","11"]},"group":2},{"type":"bedgraph","name":"ATAC_4dpa_GFPne_rep1","url":"http://wangftp.wustl.edu/~yhou/datahub/danRer10/2014_ATAC/S2_duprm_Mrm.bdg.gz","mode":1,"qtc":{"anglescale":1,"pr":0,"pg":77,"pb":0,"nr":255,"ng":0,"nb":0,"pth":"rgb(0,53,0)","nth":"#800000","thtype":1,"thmin":0,"thmax":150,"thpercentile":90,"height":20,"summeth":1},"metadata":{"md1":["3","12"]},"group":2},{"type":"bedgraph","name":"ATAC_0dpa_GFPpo_rep1","url":"http://wangftp.wustl.edu/~yhou/datahub/danRer10/2014_ATAC/S3_duprm_Mrm.bdg.gz","mode":1,"qtc":{"anglescale":1,"pr":0,"pg":77,"pb":0,"nr":255,"ng":0,"nb":0,"pth":"rgb(0,53,0)","nth":"#800000","thtype":1,"thmin":0,"thmax":150,"thpercentile":90,"height":20,"summeth":1},"metadata":{"md1":["3","13"]},"group":2},{"type":"bedgraph","name":"ATAC_0dpa_GFPne_rep1","url":"http://wangftp.wustl.edu/~yhou/datahub/danRer10/2014_ATAC/S4_duprm_Mrm.bdg.gz","mode":1,"qtc":{"anglescale":1,"pr":0,"pg":77,"pb":0,"nr":255,"ng":0,"nb":0,"pth":"rgb(0,53,0)","nth":"#800000","thtype":1,"thmin":0,"thmax":150,"thpercentile":90,"height":20,"summeth":1},"metadata":{"md1":["3","14"]},"group":2},{"type":"bedgraph","name":"ATAC_4dpa_GFPpo_rep2","url":"http://wangftp.wustl.edu/~yhou/datahub/danRer10/2014_ATAC/S5_duprm_Mrm.bdg.gz","mode":1,"qtc":{"anglescale":1,"pr":0,"pg":77,"pb":0,"nr":255,"ng":0,"nb":0,"pth":"rgb(0,53,0)","nth":"#800000","thtype":1,"thmin":0,"thmax":150,"thpercentile":90,"height":20,"summeth":1},"metadata":{"md1":["3","11"]},"group":2},{"type":"bedgraph","name":"ATAC_4dpa_GFPne_rep2","url":"http://wangftp.wustl.edu/~yhou/datahub/danRer10/2014_ATAC/S6_duprm_Mrm.bdg.gz","mode":1,"qtc":{"anglescale":1,"pr":0,"pg":77,"pb":0,"nr":255,"ng":0,"nb":0,"pth":"rgb(0,53,0)","nth":"#800000","thtype":1,"thmin":0,"thmax":150,"thpercentile":90,"height":20,"summeth":1},"metadata":{"md1":["3","12"]},"group":2},{"type":"bedgraph","name":"ATAC_0dpa_GFPpo_rep2","url":"http://wangftp.wustl.edu/~yhou/datahub/danRer10/2014_ATAC/S7_duprm_Mrm.bdg.gz","mode":1,"qtc":{"anglescale":1,"pr":0,"pg":77,"pb":0,"nr":255,"ng":0,"nb":0,"pth":"rgb(0,53,0)","nth":"#800000","thtype":1,"thmin":0,"thmax":150,"thpercentile":90,"height":20,"summeth":1},"metadata":{"md1":["3","13"]},"group":2},{"type":"bedgraph","name":"ATAC_0dpa_GFPne_rep2","url":"http://wangftp.wustl.edu/~yhou/datahub/danRer10/2014_ATAC/S8_duprm_Mrm.bdg.gz","mode":1,"qtc":{"anglescale":1,"pr":0,"pg":77,"pb":0,"nr":255,"ng":0,"nb":0,"pth":"rgb(0,53,0)","nth":"#800000","thtype":1,"thmin":0,"thmax":150,"thpercentile":90,"height":20,"summeth":1},"metadata":{"md1":["3","14"]},"group":2},{"type":"bed","name":"ATAC_peak_4dpa_GFPpo_rep1","url":"http://wangftp.wustl.edu/~yhou/datahub/danRer10/2014_ATAC/S1_duprm_Mrm_peaks.bed.gz","mode":2,"qtc":{"anglescale":1,"pr":180,"pg":0,"pb":0,"nr":0,"ng":0,"nb":230,"pth":"rgb(125,0,0)","nth":"#000099","thtype":0,"thmin":0,"thmax":10,"thpercentile":95,"height":50,"summeth":1,"textcolor":"#000000","fontsize":"8pt","fontfamily":"sans-serif","fontbold":false,"bedcolor":"#336666"},"metadata":{"md1":["4","11"]},"group":3},{"type":"bed","name":"ATAC_peak_4dpa_GFPne_rep1","url":"http://wangftp.wustl.edu/~yhou/datahub/danRer10/2014_ATAC/S2_duprm_Mrm_peaks.bed.gz","mode":2,"qtc":{"anglescale":1,"pr":180,"pg":0,"pb":0,"nr":0,"ng":0,"nb":230,"pth":"rgb(125,0,0)","nth":"#000099","thtype":0,"thmin":0,"thmax":10,"thpercentile":95,"height":50,"summeth":1,"textcolor":"#000000","fontsize":"8pt","fontfamily":"sans-serif","fontbold":false,"bedcolor":"#336666"},"metadata":{"md1":["4","12"]},"group":3},{"type":"bed","name":"ATAC_peak_0dpa_GFPpo_rep1","url":"http://wangftp.wustl.edu/~yhou/datahub/danRer10/2014_ATAC/S3_duprm_Mrm_peaks.bed.gz","mode":2,"qtc":{"anglescale":1,"pr":180,"pg":0,"pb":0,"nr":0,"ng":0,"nb":230,"pth":"rgb(125,0,0)","nth":"#000099","thtype":0,"thmin":0,"thmax":10,"thpercentile":95,"height":50,"summeth":1,"textcolor":"#000000","fontsize":"8pt","fontfamily":"sans-serif","fontbold":false,"bedcolor":"#336666"},"metadata":{"md1":["4","13"]},"group":3},{"type":"bed","name":"ATAC_peak_0dpa_GFPne_rep1","url":"http://wangftp.wustl.edu/~yhou/datahub/danRer10/2014_ATAC/S4_duprm_Mrm_peaks.bed.gz","mode":2,"qtc":{"anglescale":1,"pr":180,"pg":0,"pb":0,"nr":0,"ng":0,"nb":230,"pth":"rgb(125,0,0)","nth":"#000099","thtype":0,"thmin":0,"thmax":10,"thpercentile":95,"height":50,"summeth":1,"textcolor":"#000000","fontsize":"8pt","fontfamily":"sans-serif","fontbold":false,"bedcolor":"#336666"},"metadata":{"md1":["4","14"]},"group":3},{"type":"bed","name":"ATAC_peak_4dpa_GFPpo_rep2","url":"http://wangftp.wustl.edu/~yhou/datahub/danRer10/2014_ATAC/S5_duprm_Mrm_peaks.bed.gz","mode":2,"qtc":{"anglescale":1,"pr":180,"pg":0,"pb":0,"nr":0,"ng":0,"nb":230,"pth":"rgb(125,0,0)","nth":"#000099","thtype":0,"thmin":0,"thmax":10,"thpercentile":95,"height":50,"summeth":1,"textcolor":"#000000","fontsize":"8pt","fontfamily":"sans-serif","fontbold":false,"bedcolor":"#336666"},"metadata":{"md1":["4","11"]},"group":3},{"type":"bed","name":"ATAC_peak_4dpa_GFPne_rep2","url":"http://wangftp.wustl.edu/~yhou/datahub/danRer10/2014_ATAC/S6_duprm_Mrm_peaks.bed.gz","mode":2,"qtc":{"anglescale":1,"pr":180,"pg":0,"pb":0,"nr":0,"ng":0,"nb":230,"pth":"rgb(125,0,0)","nth":"#000099","thtype":0,"thmin":0,"thmax":10,"thpercentile":95,"height":50,"summeth":1,"textcolor":"#000000","fontsize":"8pt","fontfamily":"sans-serif","fontbold":false,"bedcolor":"#336666"},"metadata":{"md1":["4","12"]},"group":3},{"type":"bed","name":"ATAC_peak_0dpa_GFPpo_rep2","url":"http://wangftp.wustl.edu/~yhou/datahub/danRer10/2014_ATAC/S7_duprm_Mrm_peaks.bed.gz","mode":2,"qtc":{"anglescale":1,"pr":180,"pg":0,"pb":0,"nr":0,"ng":0,"nb":230,"pth":"rgb(125,0,0)","nth":"#000099","thtype":0,"thmin":0,"thmax":10,"thpercentile":95,"height":50,"summeth":1,"textcolor":"#000000","fontsize":"8pt","fontfamily":"sans-serif","fontbold":false,"bedcolor":"#336666"},"metadata":{"md1":["4","13"]},"group":3},{"type":"bed","name":"ATAC_peak_0dpa_GFPne_rep2","url":"http://wangftp.wustl.edu/~yhou/datahub/danRer10/2014_ATAC/S8_duprm_Mrm_peaks.bed.gz","mode":2,"qtc":{"anglescale":1,"pr":180,"pg":0,"pb":0,"nr":0,"ng":0,"nb":230,"pth":"rgb(125,0,0)","nth":"#000099","thtype":0,"thmin":0,"thmax":10,"thpercentile":95,"height":50,"summeth":1,"textcolor":"#000000","fontsize":"8pt","fontfamily":"sans-serif","fontbold":false,"bedcolor":"#336666"},"metadata":{"md1":["4","14"]},"group":3},{"type":"bedgraph","name":"RNA_4dpa_GFPpo_rep1","url":"http://wangftp.wustl.edu/~hlee/datahub/danRer10/FinRegeneration/RNA/WangT_RNA_01_4dpaGFPpo_rep5_TruSeq08_ACTTGAAT_S1.rpm.bedGraph.gz","mode":1,"qtc":{"anglescale":1,"pr":150,"pg":0,"pb":0,"nr":255,"ng":0,"nb":0,"pth":"rgb(105,0,0)","nth":"#800000","thtype":1,"thmin":0,"thmax":10,"thpercentile":90,"height":20,"summeth":1},"metadata":{"md1":["5","11"]},"group":4},{"type":"bedgraph","name":"RNA_4dpa_GFPne_rep1","url":"http://wangftp.wustl.edu/~hlee/datahub/danRer10/FinRegeneration/RNA/WangT_RNA_02_4dpaGFPne_rep5_TruSeq09_GATCAGAT_S2.rpm.bedGraph.gz","mode":1,"qtc":{"anglescale":1,"pr":150,"pg":0,"pb":0,"nr":255,"ng":0,"nb":0,"pth":"rgb(105,0,0)","nth":"#800000","thtype":1,"thmin":0,"thmax":10,"thpercentile":90,"height":20,"summeth":1},"metadata":{"md1":["5","12"]},"group":4},{"type":"bedgraph","name":"RNA_0dpa_GFPpo_rep1","url":"http://wangftp.wustl.edu/~hlee/datahub/danRer10/FinRegeneration/RNA/WangT_RNA_03_0dpaGFPpo_rep5_TruSeq11_GGCTACAT_S3.rpm.bedGraph.gz","mode":1,"qtc":{"anglescale":1,"pr":150,"pg":0,"pb":0,"nr":255,"ng":0,"nb":0,"pth":"rgb(105,0,0)","nth":"#800000","thtype":1,"thmin":0,"thmax":10,"thpercentile":90,"height":20,"summeth":1},"metadata":{"md1":["5","13"]},"group":4},{"type":"bedgraph","name":"RNA_0dpa_GFPne_rep1","url":"http://wangftp.wustl.edu/~hlee/datahub/danRer10/FinRegeneration/RNA/WangT_RNA_04_0dpaGFPne_rep5_TruSeq20_GTGGCCTT_S4.rpm.bedGraph.gz","mode":1,"qtc":{"anglescale":1,"pr":150,"pg":0,"pb":0,"nr":255,"ng":0,"nb":0,"pth":"rgb(105,0,0)","nth":"#800000","thtype":1,"thmin":0,"thmax":10,"thpercentile":90,"height":20,"summeth":1},"metadata":{"md1":["5","14"]},"group":4},{"type":"bedgraph","name":"RNA_4dpa_GFPpo_rep2","url":"http://wangftp.wustl.edu/~hlee/datahub/danRer10/FinRegeneration/RNA/WangT_RNA_05_4dpaGFPpo_rep6_TruSeq21_GTTTCGGA_S5.rpm.bedGraph.gz","mode":1,"qtc":{"anglescale":1,"pr":150,"pg":0,"pb":0,"nr":255,"ng":0,"nb":0,"pth":"rgb(105,0,0)","nth":"#800000","thtype":1,"thmin":0,"thmax":10,"thpercentile":90,"height":20,"summeth":1},"metadata":{"md1":["5","11"]},"group":4},{"type":"bedgraph","name":"RNA_4dpa_GFPne_rep2","url":"http://wangftp.wustl.edu/~hlee/datahub/danRer10/FinRegeneration/RNA/WangT_RNA_06_4dpaGFPne_rep6_TruSeq22_CGTACGTA_S6.rpm.bedGraph.gz","mode":1,"qtc":{"anglescale":1,"pr":150,"pg":0,"pb":0,"nr":255,"ng":0,"nb":0,"pth":"rgb(105,0,0)","nth":"#800000","thtype":1,"thmin":0,"thmax":10,"thpercentile":90,"height":20,"summeth":1},"metadata":{"md1":["5","12"]},"group":4},{"type":"bedgraph","name":"RNA_0dpa_GFPpo_rep2","url":"http://wangftp.wustl.edu/~hlee/datahub/danRer10/FinRegeneration/RNA/WangT_RNA_07_0dpaGFPpo_rep6_TruSeq23_GAGTGGAT_S7.rpm.bedGraph.gz","mode":1,"qtc":{"anglescale":1,"pr":150,"pg":0,"pb":0,"nr":255,"ng":0,"nb":0,"pth":"rgb(105,0,0)","nth":"#800000","thtype":1,"thmin":0,"thmax":10,"thpercentile":90,"height":20,"summeth":1},"metadata":{"md1":["5","13"]},"group":4},{"type":"bedgraph","name":"RNA_0dpa_GFPne_rep2","url":"http://wangftp.wustl.edu/~hlee/datahub/danRer10/FinRegeneration/RNA/WangT_RNA_08_0dpaGFPne_rep6_TruSeq25_ACTGATAT_S8.rpm.bedGraph.gz","mode":1,"qtc":{"anglescale":1,"pr":150,"pg":0,"pb":0,"nr":255,"ng":0,"nb":0,"pth":"rgb(105,0,0)","nth":"#800000","thtype":1,"thmin":0,"thmax":10,"thpercentile":90,"height":20,"summeth":1},"metadata":{"md1":["5","14"]},"group":4},{"type":"native_track","list":[{"name":"refGene","mode":3,"qtc":{"anglescale":1,"pr":255,"pg":0,"pb":0,"nr":0,"ng":0,"nb":230,"pth":"#800000","nth":"#000099","thtype":0,"thmin":0,"thmax":10,"thpercentile":95,"height":50,"summeth":1,"textcolor":"#000000","fontsize":"8pt","fontfamily":"sans-serif","fontbold":false,"bedcolor":"#002EB8"},"metadata":{},"details":{"source":"UCSC Genome Browser","download date":"May 6, 2015"}},{"name":"cpgisland","mode":3,"qtc":{"anglescale":1,"pr":255,"pg":0,"pb":0,"nr":0,"ng":0,"nb":230,"pth":"#800000","nth":"#000099","thtype":0,"thmin":0,"thmax":10,"thpercentile":95,"height":50,"summeth":1,"textcolor":"#000000","fontsize":"8pt","fontfamily":"sans-serif","fontbold":false,"bedcolor":"#336666"},"metadata":{}}]},{"type":"metadata","vocabulary_set":{"md1":{"vocabulary":{"Assay":[1,2,3,4,5,6],"Sample":[11,12,13,14,15,21,22,23,24,25,26,27,28],"DMR/DAR":[40102,40304,40103,40204]},"terms":{"1":["MethylC-seq"],"2":["DMRs DSS areaStat"],"3":["ATAC-seq"],"4":["ATAC-seq Peak"],"5":["RNA-seq"],"11":["4dpa bone","bone cells in 4dpa blastema sorted as GFP+"],"12":["4dpa non-bone","non-bone cells in 4dpa blastema sorted as GFP-"],"13":["fin bone","bone cells in intact fin sorted as GFP+"],"14":["fin non-bone","non-bone cells in intact fin sorted as GFP-"],"15":["24hpf"],"21":["0dpa"],"22":["1dpa"],"23":["3dpa"],"24":["5dpa"],"25":["7dpa"],"26":["12dpa"],"40102":["4dpaGFPpo vs 4dpaGFPne"],"40103":["4dpaGFPpo vs 0dpaGFPpo"],"40204":["4dpaGFPne vs 0dpaGFPne"],"40304":["0dpaGFPpo vs 0dpaGFPne"]},"source":"http://wangftp.wustl.edu/~hlee/datahub/danRer10/FinRegeneration_danRer10.json.test"}},"show_terms":{"md1":["Assay","Sample"]}},{"type":"coordinate_override","coord":"chr4,19041473,chr4,19062621"},{"type":"group_yscale_fixed","groups":{"2":{"scale":1,"max_show":150,"max":150,"min_show":0,"min":0}}}]