All genes and genomic intervals are tiled together, genes are always from 5' to 3', relative to their strands. Track data of each gene are summarized into fixed length vectors, and median value over each data point is plotted.

Line width 12 345 median curve image width 300400500 600700 800 90010001100 120013001400 1500 height 300400500600700800
other curves use lighter color whisker range entire span (min to max) 1.5x of box span outlier hide show ?
plot average values

All genes and genomic intervals are tiled together, genes are always from 5' to 3', relative to their strands. Track data of each gene are summarized into fixed length vectors, and one line is plotted for each vector.

Line width 12345 line color image width 300400500 600700 800 90010001100 120013001400 1500 height 300400500600700800

Profiles of gene parts (3 kb promoter, 5' UTR, exons, introns, 3' UTR) will be plotted as separate curves, in the same fashion as first plot type (only applies to genes, genomic coordinates will be skipped)

Line width 12345 image width 300400500 600700 800 90010001100 120013001400 1500 height 300400500600700800 promoter 5' UTR exons introns 3' UTR Above colors are for median curves. Lighter color will be used for other curves. whisker range entire span (min to max) 1.5x of box span outlier hide show ?
plot average values

Run hierarchical or K-means clustering analysis on genes, and explore result through its interactive features.

distance metric euclideanpearsonspearman agglomeration single linkagecomplete linkageaverage linkage number of clusters 2345678910

Row height 12345678910 plot width of data points 12345
use global min/max positive value negative value (white for zero baseline)