![]() |
HUMAN
EPIGENOME
BROWSER
|
@ Wash U |
|
![]() |
![]() |
In genome heatmap: |
||||
8 miles
|
||||
|
||||
|
||||
|
||||
|
||||
Use drop-down menu to toggle track display mode, click ✕ to remove from list, click "Add more" button to add to list. |
Determine which scaffold sequences (chromosomes, contigs, etc) shall be displayed and in what order of appearance.
Customize browser display | Miscellaneous functions |
This space contains correlation coefficient plots and track names, adjust width to get suitable view
min: 100 pixels max: 300 pixels default: 110 pixels
Data will be retrieved for all tracks in genome heatmap, over currently displayed region
link to file will be here
|
e.g. chr10:23860171-23860260 chromosome name, start, stop can be separated by space/tab/dash/colon, use "chrX" but not "chrx" nor "CHRX". |
If coordinate is specified, will retrieve sequence over given region; else, will retrieve sequence for currently displayed region. Allowed sequence length retricted under 1,000,000 basepairs.
Add / remove | Change part | Sort |
|
|
||
New genes will be displayed immediately. | Click ✘ to mark out genes to be removed, click again to cancel, click UPDATE button to take effect. |
Display for genes
no effect for genomic coordinates
or select one using menu option
NONE selected NONE NONE NONE |
|
Enter a list of gene names or coordinates |
|
Display gene body for genes no effect for genomic coordinates genebody txstart 2500 0 |
![]() ![]() ![]() ![]() |
|
To use Google Chart for rendering,
Get data
Enter a list of genes or regions to generate bigBed file Display gene body for genes |
|
Link to file will be here |
Once a bigBed file is generated for you, it stays on our server. You can take a quick look at it by clicking the button and bring it up as a custom bigBed track. You can even run juxtaposition on it. But we won't hold the file forever so it's wise to download it if the data is important...
No tracks on show |
Panel height
Width of longest chromosome: pixels
shorter chromosomes will be scaled proportionally
Image vertical spacing: pixels
effective when showing multiple tracks
Chromosome ideogram: height: pixels
Term name # of attributes
upstream: 2500 bp | downstream: 0 bp |
Define origin: |
![]() |
positive value
≥ threshold
|
negative value
≤ threshold
|
||||||||||||||
P-value cutoff:
cutoff line color
Track height: pixels
|
Font | family: |
size: text color |
General |
Data processing |
Other versions |
GEO |
Read alignment |
No metadata annotation.
Click button to annotate.
Metadata annotation |
![]() |
Quick help display tips over various components |
♞ | Relocation jump to another place in genome |
![]() |
Sticky note make a sticky note |
![]() |
Bird's Eye View Whole-genome snapshot |
![]() |
Gene Plot focus on a set of genes |
⚙ | bigBed file generator make bigBed file using genes or coordinates |
|
red
green
blue
yellow
teal
olive
orange
maroon
fuchsia
slateblue
indigo
dimgray
|