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Washington University School of Medicine > Departmet of Genetics > Center for Genome Sciences & Systems Biology |
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Browser
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News
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User manual
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Video demo
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struct region
{ struct region *prev; struct region *next; short chromIdx; char *name; }; Source code
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Contact us
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Welcome to the gateway to the Human Epigenome Browser. This tool provides researchers with a cutting-edge resource for visualizing and interacting with whole-genome datasets. The browser currently hosts Human Epigenome Atlas data produced by the Roadmap Epigenomics project, but its use of advanced, multi-resolution data formats and its user-friendly interface make it possible for investigators to upload and visualize their own data as custom tracks. The Human Epigenome Browser is developed and maintained by the Epigenome Informatics Group at Washington University in St. Louis. If you have questions or comments related to the tools or data on this website, please feel free to contact us on our public mailing list. Viewable on these web browsers: Google Chrome, Chromium, Firefox, and IE10 |
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Source code
Go to source code archive and download the zip file with biggest version number. It contains source code of all programs and web pages, online manual, and documents in working shape.
Refer to Xin's notes on installing the browser.
The source code is freely available for non-commercial use. Commercial users need to contact Ting Wang to obtain license.
Dependency
The Human Epigenome Browser is built upon following open-source softwares:
- Ubuntu Linux http://www.ubuntu.com/
- GNU C http://www.gnu.org/s/libc/
- MySQL http://www.mysql.com/
- Apache http://httpd.apache.org/
- R http://www.r-project.org/
- SOAPpy http://pypi.python.org/pypi/SOAPpy
- Kent Source Tree http://hgwdev.cse.ucsc.edu/~kent/src/unzipped/
All video clips are made using the awesome desktop session recorder software recordMyDesktop.
Here is a past version of video introduction Brett has made in June 2011, click here to view.
Following documents are available:
Supplementary material for Zhou, X. et al., Nature Method 8, 989-990 (2011)
You are welcome to join our Google+ community.
Or send emails to:
Xin Zhou, postdoc fellow
Ting Wang, assistant professor
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